BAC Information

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BAC

Clone NameB6Ng01-196O01
ChromosomeX (Build37)
Map Location 34,977,818 - 34,978,910
singlet/doubletsinglet
Overlap genenone
Upstream genePgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e
Downstream geneLOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196O01.bB6Ng01-196O01.g
ACCGA018896GA018897
length1,1951,094
definitionB6Ng01-196O01.b B6Ng01-196O01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttaggactttactgatcagataggctatccaaaccctctgaac
caactgccatgttctgagccctcacatgtaacaaaagaggtgcaagagag
acaccagcagcttaggagagcagagctagcgccagagtggagttatttcc
tatgaccctaaaacccaaaccaactagagaggcaaaagattgaaacacct
agtataccaagaagcttttatgacaaaactgtacattcacacaatctttg
aaacaaacatgattacatttaaaaaatcaaatcaggcccattgcttagtg
tttgacatgaaaatgagaaaacaaaagcaatggagctgagaagatgaaat
agatattgtttgtttgtttgtttgtttgattgattttggttttttagtta
ccctagacagagctgaaactcactctgcaaccaagaatgactttgaagtt
atgatattttctgccttacctcatgagtgcttagaatactgaaacatcct
gccacttcatggaatttaggtattgtcaaaaatatttcatctcaatctgg
aatgtctaccctgcctctgagtattcaacagacctggggggggggggaga
cacgatttagcattacaatacaagcagcatcagaccaacctactacattt
cccccttttgtccaattaaaaaggctttttctctcagatataaactgaat
ataatcataacaattataaaactataagttatgatatacatttattatgt
ccagcccatttatattaggcaacttagctaaagcattttattatctatcc
tatcttgatgagttttagaattttgtatttaaataattttttattttact
tatattaccattcgtaaaacattttttaaacctagaacaccttcttaatg
ctaaacaactttaagtttagttgtgagaactatgactatctaagtcttca
accccatcagagacattgagaagaaatattaatttgactatgtaggaagt
tcaggaacacagcttcctaaaaaatatagaccacctgcaactataagttt
tttttaataacatgggaagcatcaatcttcagccttctgtcccaaaaata
tctgccagaacttacgtgaaagcaggaattatgataaactatctttcctg
ttcttgacaaactttaacgatccagctactctggggtcatttttt
gaattcattccctgtgactacttataaaagacctgcacagaaaaaggcta
gccaaaatgctactgccaataggagaaagccttgggaatgtccattcaaa
tggtaatagtgaccattgacttcagctgggggaaggagagtcagtttgct
gccatgttaacatcatgaggatgttatgcatgctgcagtaatggtcttac
atcagtatacacacaggcaggaaaaaggagaccaagtaggtgttaaaaac
ataaaataggaagggagaagtagagaggaaaagggcaggggtaattttag
gaaagagaatgtgagggtggatttgagctgctgcatcataagcaaggatg
caatgctcagacagtaaaattagacaaaatgtaaatcaattcggccgctc
actgaatgacaggatagtagatgaatgagaattgttaagacgaaacgaat
gcccaattttttttttttgacacataaactcacgtctcaggaaattacct
tattgagacataaccttgttaaagaaaaacttctgaacatactcactatc
taaagatggtttggaaaagctgagcagcctgcctctctctgccagtgctc
tcattacaggcactgcggcattgagcctccatgcttgctccttcagtgct
ccaggtaaaccatgggtggctttatacatgttaggtaaagactctgcaaa
ctgagctacatctccagcaataaacatatgccgtcactatttttccagac
tggacagtaaattctccagtgcttgacactgacacgagcaatgccaggat
ttagagcaaagaggcaagaaaatctaggaaagagaaacatgtaggctttg
ttgtgaggtagttatcagagctgtgaggtgagtcttgtccaaaaagaact
gcagcaccaggagtgcactccaaacaagggacagtgtggaaaaatgatag
tgggtgcagggcctttctagatcaggataataaagttctcagtcattgct
ccagtgctgtgtttgtatgctcccatcatgatatggactacccccgaact
gttaagctagcttcaattaaatacttctcttttaattacagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_34977818_34978910
seq2: B6Ng01-196O01.g_62_1155

seq1  GAATTCATTCCCTGTGACTACTTATAAAAGACCTGCACAGAAAAAGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCTGTGACTACTTATAAAAGACCTGCACAGAAAAAGGCTA  50

seq1  GCCAAAATGCTACTGCCAATAGGAGAAAGCCTTGGGAATGTCCATTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATGCTACTGCCAATAGGAGAAAGCCTTGGGAATGTCCATTCAAA  100

seq1  TGGTAATAGTGACCATTGACTTCAGCTGGGGGAAGGAGAGTCAGTTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATAGTGACCATTGACTTCAGCTGGGGGAAGGAGAGTCAGTTTGCT  150

seq1  GCCATGTTAACATCATGAGGATGTTATGCATGCTGCAGTAATGGTCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTAACATCATGAGGATGTTATGCATGCTGCAGTAATGGTCTTAC  200

seq1  ATCAGTATACACACAGGCAGGAAAAAGGAGACCAAGTAGGTGTTAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATACACACAGGCAGGAAAAAGGAGACCAAGTAGGTGTTAAAAAC  250

seq1  ATAAAATAGGAAGGGAGAAGTAGAGAGGAAAAGGGCAGGGGTAATTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGGAAGGGAGAAGTAGAGAGGAAAAGGGCAGGGGTAATTTTAG  300

seq1  GAAAGAGAATGTGAGGGTGGATTTGAGCTGCTGCATCATAAGCAAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAATGTGAGGGTGGATTTGAGCTGCTGCATCATAAGCAAGGATG  350

seq1  CAATGCTCAGACAGTAAAATTAGACAAAATGTAAATCAATTCGGCCGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCAGACAGTAAAATTAGACAAAATGTAAATCAATTCGGCCGCTC  400

seq1  ACTGAATGACAGGATAGTAGATGAATGAGAATTGTTAAGACGAAACGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGACAGGATAGTAGATGAATGAGAATTGTTAAGACGAAACGAAT  450

seq1  GCCCAATTTTTTTTTTTTGACACATAAACTCACGTCTCAGGAAATTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATTTTTTTTTTTTGACACATAAACTCACGTCTCAGGAAATTACCT  500

seq1  TATTGAGACATAACCTTGTTAAAGAAAAACTTCTGAACATACTCACTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGACATAACCTTGTTAAAGAAAAACTTCTGAACATACTCACTATC  550

seq1  TAAAGATGGTTTGGAAAAGCTGAGCAGCCTGCCTCTCTCTGCCAGTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGTTTGGAAAAGCTGAGCAGCCTGCCTCTCTCTGCCAGTGCTC  600

seq1  TCATTACAGGCACTGCGGCATTGAGCCTCCATGCTTGCTCCTTCAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAGGCACTGCGGCATTGAGCCTCCATGCTTGCTCCTTCAGTGCT  650

seq1  CCAGGTAAACCATGGGTGGCTTTATACATGTTAGGTAAAGACTCTGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAACCATGGGTGGCTTTATACATGTTAGGTAAAGACTCTGCAAA  700

seq1  CTGAGCTACATCTCCAGCAATAAACATATGCCGTCACTATTTTTCCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTACATCTCCAGCAATAAACATATGCCGTCACTATTTTTCCAGAC  750

seq1  TGGACAGTAAATTCTCCAGTGCTTGACACTGACACGAGCAATGCCAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTAAATTCTCCAGTGCTTGACACTGACACGAGCAATGCCAGGAT  800

seq1  TTAGAGCAAAGAGGCAAGAAAATCTAGGAAAGAGAAACATGTAGGCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAAAGAGGCAAGAAAATCTAGGAAAGAGAAACATGTAGGCTTTG  850

seq1  TTGTGAGGTAGTTATCAGAGCTGTGAGGTGAGTCTTGTCCAAAAAGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGTAGTTATCAGAGCTGTGAGGTGAGTCTTGTCCAAAAAGAACT  900

seq1  GCAGCACCAGGAGTGCACTCCAAACAAGGGACAGTGTGGAAAAATGATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCAGGAGTGCACTCCAAACAAGGGACAGTGTGGAAAAATGATAG  950

seq1  T-GGTGCAGGGCC-TTCTAGATCAGGAT-ATAAAGTTCTCAGTCATTGCT  997
      | ||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TGGGTGCAGGGCCTTTCTAGATCAGGATAATAAAGTTCTCAGTCATTGCT  1000

seq1  CCAGTGCTGTGTTTGTATGCTTCCCATCATGATAATGGACTAACCCCCGA  1047
      |||||||||||||||||||| |||||||||||| ||||||| ||||||| 
seq2  CCAGTGCTGTGTTTGTATGC-TCCCATCATGAT-ATGGACT-ACCCCCG-  1046

seq1  AACTG-TAAGCTAGCTCCAAATTAAATAC-TCTCTTTT-ATTACAGCTG  1093
      ||||| |||||||||| | |||||||||| |||||||| ||||||||||
seq2  AACTGTTAAGCTAGCTTC-AATTAAATACTTCTCTTTTAATTACAGCTG  1094