BAC Information

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BAC

Clone NameB6Ng01-199H01
ChromosomeX (Build37)X (Build37)
Map Location 53,118,206 - 53,119,30451,323,104 - 51,324,038
singlet/doubletsingletsinglet
Overlap geneLOC666268, LOC666107
Upstream geneLOC666135, LOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666097
Downstream geneLOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199H01.bB6Ng01-199H01.g
ACCGA020774GA020775
length1,099975
definitionB6Ng01-199H01.b B6Ng01-199H01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,118,206 - 53,119,304)(51,323,104 - 51,324,038)
sequence
gaattctcctgggtttctttctccctcccaacttctttatcttttaactc
ggtttctttattgtaacagccccccagaactttatagactcccagaaatt
taatagatcctgagatcttagcacaactgatgccatgatagaaacaccat
tcaggccttgcattccaacaagagggaaaaaaatcttcctgtcttagtca
gagttactattgctgtgacgagaaaaaaaacaatgaccaaatcaacatgg
gaagtaatacatttatttgacttactctttttaaccaaacttcatcattt
aaggaagtcagaacaggaacttaaatagggcaggaacctggagagagaag
ctgataggagagccatggaagagtgctgcttactgcttgttcttcgtgac
ttgctcagcttgctttcatatagaacccaggaacatgtaccaagggatgt
cacattgacatatatacagacagacagacacagtgacacagacacacaca
catacacacacacacacacacagacacacacacacacacaaagagagagt
ggggtgacattgagagagacactgagagagatgaataagagatctggacc
ttctcccatcactaattaagaaaatgccatataggcttgccccatatcat
agaggtatttccttatatggggatatcttcactcagaagagtttatgtca
aaactaatttaaaaaaaaaagaaacaaaagcaaatcaaaagaaaaacaac
tacaaaaactagctagcccatctgtcaaaacagcaacaatggcgaagtct
atgatttcaggatgggattgggaaagtctctgagtgaaacttttatatgt
gtactatccctgcttttttgctcctgtagtcccattacttcctgaaatgc
caaccaggatatgattttttttttttttttacgcacaaaaaggctaagaa
ttgtaaggctcagggctttcatgatctggacaattctccatacatcccct
agcctgaaataagactttatattcagcttaaaggtatctatgtggtggtc
tctaggtggatcacctggttcagctgggcctcgactcaaaggcatatac
gaattcctttatctacttggacttaagctgtgtataaggagataagaatg
gatcaatttgcattcttttacatgctgacagccaattgaaccagcaccat
ttgtcgaaaatgctgttttccccccactggataattttagctcctttgtc
aaagatcaagttaccataggtgtatgagttcatttctgggtctttaattc
tattccattgatctacctgcctgacaggatacgttttctttcataaagtt
agtaatgatatcgtggcagactaaaactactttactaccaattgtgcata
tatgtggacagatgtgttgcaccacatcatttgagaaacaccatcgtaga
aagcaagaataatgggtgacattcaggcaaacctgaaatgacatacaacc
taacttctggtacctatacagatcataagaagagctgggtttggaagaat
tgtcataggtcagaaaacatatctgtgggtgcaatatggattatttttaa
tacaaagtaaactgaattaatcttaaagttgcatttgttaaccagatatt
tcccaagtaactacacagaggaaataagatttattaaaactgccttgaac
caaatactgaatgattattagttcattctaaaactccaacctaatcaggc
ttcctctcagagagtattctcatctttcttgtatttttggtccattcttg
agccaactctgctctctctctctctctctctctctctctatatatatata
tatatatatatatatatatatatatataatatttattgacgagacatatt
ataaattggtaaagaattgttaacatttaacttaagacaagaggttcttg
atattaagctattacaattgttcctatccagaatagaaaacttaattatt
tcagggaagaagaaaatcagtatttgaaggaacacatgggattaaccctt
taacagagtttcacaaaaaatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_53118206_53119304
seq2: B6Ng01-199H01.b_41_1139

seq1  GAATTCTCCTGGGTTTCTTTCTCCCTCCCAACTTCTTTATCTTTTAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGGTTTCTTTCTCCCTCCCAACTTCTTTATCTTTTAACTC  50

seq1  GGTTTCTTTATTGTAACAGCCCCCCAGAACTTTATAGACTCCCAGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTTATTGTAACAGCCCCCCAGAACTTTATAGACTCCCAGAAATT  100

seq1  TAATAGATCCTGAGATCTTAGCACAACTGATGCCATGATAGAAACACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATCCTGAGATCTTAGCACAACTGATGCCATGATAGAAACACCAT  150

seq1  TCAGGCCTTGCATTCCAACAAGAGGGAAAAAAATCTTCCTGTCTTAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTTGCATTCCAACAAGAGGGAAAAAAATCTTCCTGTCTTAGTCA  200

seq1  GAGTTACTATTGCTGTGACGAGAAAAAAAACAATGACCAAATCAACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTATTGCTGTGACGAGAAAAAAAACAATGACCAAATCAACATGG  250

seq1  GAAGTAATACATTTATTTGACTTACTCTTTTTAACCAAACTTCATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATACATTTATTTGACTTACTCTTTTTAACCAAACTTCATCATTT  300

seq1  AAGGAAGTCAGAACAGGAACTTAAATAGGGCAGGAACCTGGAGAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTCAGAACAGGAACTTAAATAGGGCAGGAACCTGGAGAGAGAAG  350

seq1  CTGATAGGAGAGCCATGGAAGAGTGCTGCTTACTGCTTGTTCTTCGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGAGAGCCATGGAAGAGTGCTGCTTACTGCTTGTTCTTCGTGAC  400

seq1  TTGCTCAGCTTGCTTTCATATAGAACCCAGGAACATGTACCAAGGGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCTTGCTTTCATATAGAACCCAGGAACATGTACCAAGGGATGT  450

seq1  CACATTGACATATATACAGACAGACAGACACAGTGACACAGACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGACATATATACAGACAGACAGACACAGTGACACAGACACACACA  500

seq1  CATACACACACACACACACACAGACACACACACACACACAAAGAGAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACACACACACACACAGACACACACACACACACAAAGAGAGAGT  550

seq1  GGGGTGACATTGAGAGAGACACTGAGAGAGATGAATAAGAGATCTGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACATTGAGAGAGACACTGAGAGAGATGAATAAGAGATCTGGACC  600

seq1  TTCTCCCATCACTAATTAAGAAAATGCCATATAGGCTTGCCCCATATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATCACTAATTAAGAAAATGCCATATAGGCTTGCCCCATATCAT  650

seq1  AGAGGTATTTCCTTATATGGGGATATCTTCACTCAGAAGAGTTTATGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATTTCCTTATATGGGGATATCTTCACTCAGAAGAGTTTATGTCA  700

seq1  AAACTAATTTAAAAAAAAAAGAAACAAAAGCAAATCAAAAGAAAAACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATTTAAAAAAAAAAGAAACAAAAGCAAATCAAAAGAAAAACAAC  750

seq1  TACAAAAACTAGCTAGCCCATCTGTCAAAACAGCAACAATGGCGAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAACTAGCTAGCCCATCTGTCAAAACAGCAACAATGGCGAAGTCT  800

seq1  ATGATTTCAGGATGGGATTGGGAAAGTCTCTGAGTGAAACTTTTATATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCAGGATGGGATTGGGAAAGTCTCTGAGTGAAACTTTTATATGT  850

seq1  GTACTATCCCTGCTTTTTTGCTCCTGTAGTCCCATTACTTCCTGAAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATCCCTGCTTTTTTGCTCCTGTAGTCCCATTACTTCCTGAAATGC  900

seq1  CAACCAGGATATGA--TTTTTTTTTTTTTTACGCAC-AAAAGGCTAAGAA  947
      ||||||||||||||  |||||||||||||||||||| |||||||||||||
seq2  CAACCAGGATATGATTTTTTTTTTTTTTTTACGCACAAAAAGGCTAAGAA  950

seq1  TTGTAAGGCTCAGGGC-TTCATGATCTGGACAAATTCTCCATACATCCCC  996
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TTGTAAGGCTCAGGGCTTTCATGATCTGGAC-AATTCTCCATACATCCCC  999

seq1  TAGCCTGAAATAAAGACTTTATATTCAGCTTAAAGGGTATCTATGTGGTG  1046
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TAGCCTGAAAT-AAGACTTTATATTCAGCTTAAA-GGTATCTATGTGGTG  1047

seq1  GTCTCTAGTGGGATCACCTGGTTCAGGCTGGCCTCGAACTCAAAGGCATA  1096
      ||||||||  ||||||||||||||||   ||||||| |||||||||||||
seq2  GTCTCTAGGTGGATCACCTGGTTCAGCTGGGCCTCG-ACTCAAAGGCATA  1096

seq1  TAC  1099
      |||
seq2  TAC  1099

seq1: chrX_51323104_51324038
seq2: B6Ng01-199H01.g_65_953

seq1  GAATTCCTTTATCTAGTTGGACTTGAGCTGTGTACAAGGAGATAAGAATG  50
      ||||||||||||||| |||||||| ||||||||| |||||||||||||||
seq2  GAATTCCTTTATCTACTTGGACTTAAGCTGTGTATAAGGAGATAAGAATG  50

seq1  GATCAATTTGCATTATTTTACATGCTGACAGACAATTGAACCAGCACCAT  100
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  GATCAATTTGCATTCTTTTACATGCTGACAGCCAATTGAACCAGCACCAT  100

seq1  TTGTTGAAAATGCTGTTTTCCCCCTACTGGATAGCTTTAGCTCCTTTGTC  150
      |||| ||||||||||||||||||| ||||||||  |||||||||||||||
seq2  TTGTCGAAAATGCTGTTTTCCCCCCACTGGATAATTTTAGCTCCTTTGTC  150

seq1  AAAGATCAAGTTACCATAGGTATGTGAGTTCATTTCCGGGTCTTTAATTC  200
      ||||||||||||||||||||| | |||||||||||| |||||||||||||
seq2  AAAGATCAAGTTACCATAGGTGTATGAGTTCATTTCTGGGTCTTTAATTC  200

seq1  TATTCCATTGATCTACCTGCCTGTCAGGATCCATTTTCTTTCATAAAGTT  250
      ||||||||||||||||||||||| |||||| | |||||||||||||||||
seq2  TATTCCATTGATCTACCTGCCTGACAGGATACGTTTTCTTTCATAAAGTT  250

seq1  AGTAATGATATCCTGGCAGACTAAAACTACCTTACTACCAATTGTACACA  300
      |||||||||||| ||||||||||||||||| |||||||||||||| || |
seq2  AGTAATGATATCGTGGCAGACTAAAACTACTTTACTACCAATTGTGCATA  300

seq1  TATGTGGTTCAGATGTGTTGCACCACATCATCTGAGAAACACCATCGTAG  350
      |||||||  |||||||||||||||||||||| ||||||||||||||||||
seq2  TATGTGG-ACAGATGTGTTGCACCACATCATTTGAGAAACACCATCGTAG  349

seq1  AAAGCAAGAATAATGGGTGACATTCAGGCAAACCTGAAATGACATACAGC  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGCAAGAATAATGGGTGACATTCAGGCAAACCTGAAATGACATACAAC  399

seq1  CTAACTTCTGGTACCTATACAGATCAGAAGAAGAGCTGGGTTTGGAAAAA  450
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  CTAACTTCTGGTACCTATACAGATCATAAGAAGAGCTGGGTTTGGAAGAA  449

seq1  TTGTCATAGGTCAGTAAACATATCTGTGGGTGCAAAATGGATTATTTTTA  500
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TTGTCATAGGTCAGAAAACATATCTGTGGGTGCAATATGGATTATTTTTA  499

seq1  ATACAAATAAAACTGAATTAATCTTAAAGCTGCATTTGTTAACCAGTTAT  550
      |||||||  |||||||||||||||||||| |||||||||||||||| |||
seq2  ATACAAAGTAAACTGAATTAATCTTAAAGTTGCATTTGTTAACCAGATAT  549

seq1  TTCCCAAGTAACTACACAGAGGAAATAAGATTTATTAAAACTGCCTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTAACTACACAGAGGAAATAAGATTTATTAAAACTGCCTTGAA  599

seq1  CCAAATACTGAATGATTATTAGTTCACTCTAAACCTCCAACCTAATCAGG  650
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CCAAATACTGAATGATTATTAGTTCATTCTAAAACTCCAACCTAATCAGG  649

seq1  CTTCCACTCAGAGAGTATTCTCATCTTTCTTGTATTTTTGGTCCATTCTT  700
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCAGAGAGTATTCTCATCTTTCTTGTATTTTTGGTCCATTCTT  699

seq1  GAGCCAACTCTCTTTCATATATATATATTAGAATTTCCCTTCTAGTTCTC  750
      |||||||||||                                 | ||||
seq2  GAGCCAACTCT---------------------------------GCTCTC  716

seq1  TCTTTCAAGTCCTCTATCTTTCTCTTGGCTGGCAGCAGTTGTCTAACCAT  800
      ||| ||     |||| ||| |||||   ||      |  | | ||   ||
seq2  TCTCTC----TCTCTCTCTCTCTCT---CT------ATATATATATATAT  753

seq1  AT-TCTCTGT-TCTGCAAAGCCATTGGGTGATCAACATTTATTAACAAGA  848
      || | | | | | |  | |   ||         || ||||||| || |||
seq2  ATATATATATATATATATATATAT---------AATATTTATTGACGAGA  794

seq1  CAGATTATAAA-TGGT-AAGAATTGTTAACA-TTAACTTAAGACAAGAGA  895
      || |||||||| |||| |||||||||||||| ||||||||||||||||| 
seq2  CATATTATAAATTGGTAAAGAATTGTTAACATTTAACTTAAGACAAGAGG  844

seq1  TTCTTGATA-TAAGC-ATTACAAT--GCCCTATCCAG-ATAGAAA  935
      ||||||||| ||||| ||||||||    ||||||||| |||||||
seq2  TTCTTGATATTAAGCTATTACAATTGTTCCTATCCAGAATAGAAA  889