BAC Information

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BAC

Clone NameB6Ng01-199K23
ChromosomeX (Build37)
Map Location 158,289,630 - 158,431,903
singlet/doubletdoublet
Overlap geneNhs
Upstream geneGja6, Scml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199K23.bB6Ng01-199K23.g
ACCGA020955GA020956
length5591,070
definitionB6Ng01-199K23.b B6Ng01-199K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,289,630 - 158,290,190)(158,430,855 - 158,431,903)
sequence
tcatataagagagtggaatatgtaaactagaggaacaattcatagaagca
attgaaagggagcctcaatatgtcaagttgatatgggaaagaaaattgct
acaaaaattcaaggctttgtatctcataaagaaattttcaaaaaaataag
agactgcagttcaggcaacatgaatgaaatttatattgacaaatgaattt
tgtagttcatcataaatctctcaagtcagctcttctgctgagtatttttt
aggagtgagagatgaggagtgggttttattttttattttttagtctgttt
gcagaatctacctacataacaaacaagtaggagataaaagccagcagtga
ctgagggaggccttgactgaatccagacaatgcagaccattggtttaggc
cactataatcaaatcatggtctccttggattatactccctctctcatttt
tggtagcagctccaacctacagcatactaatgctgaaactgaattgcctt
gagctttggaatgtagagattggtgctcttttgacttctccacctaactt
tctagttat

gaattccactgcagagaatagataatctgaactccaggtcaggaaattaa
atgaaatgaggttccagttttcttttaggacaaaagaaaagtctgaaagt
acgtggctatagggactggtgtaggtcaacaatgctgagttttgtgtgtc
agaaacttgtgtgtcctttccttgtggcccaaggtagctgccataactca
aaacattatgtctgtgtttgagaagaaaaaaaggtgggaaaactagacat
ttatcatatcagcttcctctacctccttttttaaatcaaaaaagctaaaa
cttgccagcattttctcatagaccttttaaatgttacatttaaaagcttt
aaactggaagttgataaggcacagagtgtgggaagagagctctgggtctg
gagggtctgcaataatactacttctgctacccacagaaccaggtacatta
acagcctctttccccagagatacagtatccatgatacaagagctgagcca
gggctcaccaaacaagaacatggccagctcctccctgctcccagtggggg
gtgtagaaagtgagtaaggagatagttaaaagcccctgggggctttttgt
ccaggtgcctctgaagcatcattcctggccttaataatatattaacagac
aacatgaatgggctttggattaggaatctgataacaaagcagattaactc
ttctctcattttctttctttcatacctgcatgttgcttttctcttttgtg
ccaagaaagttagaggaaaaaatgcccaaatcccacacaggaagaaagca
attgccttgtgtagccttgatgactcagagctatgtttttagccctgcca
gccctgaagcaggaaagagctggagtgatctgattttattagttgaaaac
aacaataatgagaagatacttctttttcctaccctgtaatctgctcccag
gacctctccccaggcctccggagtccctttttaattctttcttcatgtcc
tggaccgcccaacttggctggtcctgaaatcctggtgtgcagaaggctgt
tgagacatttgaatttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158289630_158290190
seq2: B6Ng01-199K23.b_37_601

seq1  GAATTCTCATATAAGAGAGTGGAATATGTAAACTAGAGGAACAATTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATAAGAGAGTGGAATATGTAAACTAGAGGAACAATTCATA  50

seq1  GAAGCAATTGAAAGGGAGCCTCAATATGTCAAGTTGATATGGGAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATTGAAAGGGAGCCTCAATATGTCAAGTTGATATGGGAAAGAAA  100

seq1  ATTGCTACAAAAATTCAAGGCTTTGTATCTCATAAAGAAATTTTCAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTACAAAAATTCAAGGCTTTGTATCTCATAAAGAAATTTTCAAAAA  150

seq1  AATAAGAGACTGCAGTTCAGGCAACATGAATGAAATTTATATTGACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGACTGCAGTTCAGGCAACATGAATGAAATTTATATTGACAAAT  200

seq1  GAATTTTGTAGTTCATCATAAATCTCTCAAGTCAGCTCTTCTGCTGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGTAGTTCATCATAAATCTCTCAAGTCAGCTCTTCTGCTGAGTA  250

seq1  TTTTTTAGGAGTGAGAGATGAGGAGTGGGTTTTATTTTTTATTTTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGGAGTGAGAGATGAGGAGTGGGTTTTATTTTTTATTTTTTAGT  300

seq1  CTGTTTGCAGAATCTACCTACATAACAAACAAGTAGGAGATAAAAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCAGAATCTACCTACATAACAAACAAGTAGGAGATAAAAGCCAG  350

seq1  CAGTGACTGAGGGAGGCCTTGACTGAATCCAGACAATGCAGACCATTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGAGGGAGGCCTTGACTGAATCCAGACAATGCAGACCATTGGT  400

seq1  TTAGGCCACTATAATCAAATCAAGGTCTCCTTGGATTATACTCCCTCTCT  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAGGCCACTATAATCAAATCATGGTCTCCTTGGATTATACTCCCTCTCT  450

seq1  CATTTTTGGTAGCAGCTCCAACCTACAGCATACAAATGCTGAAACTGAAT  500
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTTTTGGTAGCAGCTCCAACCTACAGCATACTAATGCTGAAACTGAAT  500

seq1  AGCCTTGAGCTTTGGAATGGAGAGA-TGGTGCTC-TTTGACTTCTCCACC  548
       |||||||||||||||||| ||||| |||||||| |||||||||||||||
seq2  TGCCTTGAGCTTTGGAATGTAGAGATTGGTGCTCTTTTGACTTCTCCACC  550

seq1  TA--CTTCTAGTTAT  561
      ||   ||||||||||
seq2  TAACTTTCTAGTTAT  565


seq1: chrX_158430855_158431903
seq2: B6Ng01-199K23.g_65_1134 (reverse)

seq1  TAAGAAA-TCAATTGTCTC-ACAGCC-TCTGCACACAAGGATTTCAGGA-  46
      ||||||| |||| |||||| |||||| ||||||||| |||||||||||| 
seq2  TAAGAAATTCAAATGTCTCAACAGCCTTCTGCACACCAGGATTTCAGGAC  50

seq1  CAGCCATG-TGGGCGGTCCAGGACATGAAG-AAGAAT--AAAAGGGACTC  92
      |||||| | ||||||||||||||||||||| ||||||  |||||||||||
seq2  CAGCCAAGTTGGGCGGTCCAGGACATGAAGAAAGAATTAAAAAGGGACTC  100

seq1  GGGAGG-CTGGGGAGAG--TCTGGGAGCAGATTACAGGTTAGGAAAA--G  137
       ||||| ||||||||||   |||||||||||||||||| ||||||||   
seq2  CGGAGGCCTGGGGAGAGGTCCTGGGAGCAGATTACAGGGTAGGAAAAAGA  150

seq1  AGTATCTTCTCATTATTGTTGTTTTC-ACTAAT-AAATCAGATCACTCCA  185
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  AGTATCTTCTCATTATTGTTGTTTTCAACTAATAAAATCAGATCACTCCA  200

seq1  GCTCTTTCCTGCTTCA-GGCTGGCAGGGCT-AAAACATAGCTCTGAGTCA  233
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GCTCTTTCCTGCTTCAGGGCTGGCAGGGCTAAAAACATAGCTCTGAGTCA  250

seq1  TCAAGGCTACACAAGGCAATTGC-TTCTTCCTGTGTGGGATTTGGGCATT  282
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAAGGCTACACAAGGCAATTGCTTTCTTCCTGTGTGGGATTTGGGCATT  300

seq1  TTTTCCTCT-ACTTTCTTGGCAC-AAAGAAGAAAGCAACATGCAGGTATG  330
      ||||||||| ||||||||||||| |||||  |||||||||||||||||||
seq2  TTTTCCTCTAACTTTCTTGGCACAAAAGAGAAAAGCAACATGCAGGTATG  350

seq1  AAAGAAAG-AAATGAGAGAAGAGTTAATCTGCTTTGTTATCAGATTCCTA  379
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAATGAGAGAAGAGTTAATCTGCTTTGTTATCAGATTCCTA  400

seq1  ATCCAAAGCCCATTCATGTTGTCTGTTAATATATTATTAAGGCCAGGAAT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGCCCATTCATGTTGTCTGTTAATATATTATTAAGGCCAGGAAT  450

seq1  GATGCTTCAGAGGCACCTGGACAAAAAGCCCCCAGGGGCTTTTAACTATC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCAGAGGCACCTGGACAAAAAGCCCCCAGGGGCTTTTAACTATC  500

seq1  TCCTTACTCACTTTCTACACCCCCCACTGGGAGCAGGGAGGAGCTGGCCA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCACTTTCTACACCCCCCACTGGGAGCAGGGAGGAGCTGGCCA  550

seq1  TGTTCTTGTTTGGTGAGCCCTGGCTCAGCTCTTGTATCATGGATACTGTA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTTTGGTGAGCCCTGGCTCAGCTCTTGTATCATGGATACTGTA  600

seq1  TCTCTGGGGAAAGAGGCTGTTAATGTACCTGGTTCTGTGGGTAGCAGAAG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGGAAAGAGGCTGTTAATGTACCTGGTTCTGTGGGTAGCAGAAG  650

seq1  TAGTATTATTGCAGACCCTCCAGACCCAGAGCTCTCTTCCCACACTCTGT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTATTGCAGACCCTCCAGACCCAGAGCTCTCTTCCCACACTCTGT  700

seq1  GCCTTATCAACTTCCAGTTTAAAGCTTTTAAATGTAACATTTAAAAGGTC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCAACTTCCAGTTTAAAGCTTTTAAATGTAACATTTAAAAGGTC  750

seq1  TATGAGAAAATGCTGGCAAGTTTTAGCTTTTTTGATTTAAAAAAGGAGGT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAAATGCTGGCAAGTTTTAGCTTTTTTGATTTAAAAAAGGAGGT  800

seq1  AGAGGAAGCTGATATGATAAATGTCTAGTTTTCCCACCTTTTTTTCTTCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGCTGATATGATAAATGTCTAGTTTTCCCACCTTTTTTTCTTCT  850

seq1  CAAACACAGACATAATGTTTTGAGTTATGGCAGCTACCTTGGGCCACAAG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGACATAATGTTTTGAGTTATGGCAGCTACCTTGGGCCACAAG  900

seq1  GAAAGGACACACAAGTTTCTGACACACAAAACTCAGCATTGTTGACCTAC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACACACAAGTTTCTGACACACAAAACTCAGCATTGTTGACCTAC  950

seq1  ACCAGTCCCTATAGCCACGTACTTTCAGACTTTTCTTTTGTCCTAAAAGA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCCTATAGCCACGTACTTTCAGACTTTTCTTTTGTCCTAAAAGA  1000

seq1  AAACTGGAACCTCATTTCATTTAATTTCCTGACCTGGAGTTCAGATTATC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAACCTCATTTCATTTAATTTCCTGACCTGGAGTTCAGATTATC  1050

seq1  TATTCTCTGCAGTGGAATTC  1049
      ||||||||||||||||||||
seq2  TATTCTCTGCAGTGGAATTC  1070


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