BAC Information

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BAC

Clone NameB6Ng01-201D19
ChromosomeX (Build37)
Map Location 27,394,271 - 27,395,399
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664844, LOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248
Downstream geneLOC100039073, EG664890, LOC664898, LOC22526, EG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201D19.bB6Ng01-201D19.g
ACCGA022071GA022072
length1,1851,119
definitionB6Ng01-201D19.b B6Ng01-201D19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagcctatacctaaacataataaaagcagtagacagcaaacca
gtagccaacatcaaactaaatggtgagaaactggaggcaatcccgctaaa
atcagggactaaacaaggctgcccactttctccctacctattcaacatag
tacttgaagtcctagtcagagcaattagacaacaaaaagagaacaaatga
atacaaattggaaaggtagaaggcaaaatctcactatttccagaagatat
gatagtatatataagtgaccccaaaaattacaccagagaaatcctaaatc
tgatacacagcttcagtgcagtagctgaatacaaaattaactcaaacata
tcggtggcctttctctacaaaaagaataaacaggatgaaatagaaattag
ggaaacaacacccttcacaatagtcacaaataatataaaatacgttggtg
tgactctaactgagtaagtgaaagaaggatctgtatgataaaaatgtcaa
gtctctgaagaaaaatcaaagaaaatctcagaagttggaaagatttccca
tgctcattgattggcaggattaatgtagtaaaaatggctatcttgccgaa
agcaatataaagatttaatgcaatccccacgaaaattccaacacaattct
taactgagttagaaagggctatttgcaaattcatctggaataagaacaaa
acctaggatacaaaaactattctcaacaataaaagaatctctcctggaat
caccatgcctgatctcaagctgtactatagagcaattgtgataaaaactg
catggtacaggtatactgatagacaggtagataaatggaatagaactgaa
gacacagaaatgaacccacacacctattgtcacttgatcattgacaaagg
agcaaaaaccatccagtggaaaaaaagacacattttcaacaaatggtgct
ggctcattggcagttagcatgtagagaatgcaaattgatctatttttcat
ctcattgtacaatgctcaagtctagtagatcagaactcacataaaacaga
gaacactgaactatagagagagtgggaagagcttcgagactggcatcggg
aaaatctgacagaacagccatggctggcttagatcagattgaccatgtga
ccttataaattgccaagagccttctctagatagct
gaattcaaaggcccatagtgaaatgataggttatattgaggtaagtgttc
tcaataatggagatcagattgatatctaagatcctaacagcaacaacaaa
ttctgttgatttcactgatacatgaatacattgcatgatgttgactatgt
aatgtgcaagatctttactgccacctgaaataatgtggatatcagtgatt
tatcctgcaactaaatgaggcaattatgacaatgatttattctgccctgt
gaattgaggttgatgtcattgatatataactgtctacacaccccatggga
ttgccctaggtccatgctaccattcacaacctggttgcctgtgatccctg
ctgtccctggttaccatgttaatatcactattacatagttcctgtagaaa
ctatggtgatatcaatcatccattctgcctcaagtagccatgtttaaacc
caaagtccatgatgcttcttggattattgttaatgtcaaggatccctgag
gctagcacagacttatgtgaaattttagataaattctgctgtgtcacatc
atgttgaattatgtgttctgagatatattatgtggcggtcacatatagtg
tggcaatggacactgttgcttgttacatatacttcaggcatccagcacca
tggcagtgataccttctgccttatgggcccacattaatatcactgtctcc
tactgccaatggaatcattgttgatgtctgttatcaatgcttcagtcaaa
tttatgtcaagtatactgctacctgtaaacattttgatatcatgattcaa
agtgccactaggggagtttctttacatgttcatatctacatttgaaactc
tcttgatatccctggaaactgataccatggtatatttcagattcctactc
acacaggcaaccaggcagtgagtgatcactactaacactttggaacaaat
tgatatcagtgctcccaatgctagggaaactggccaggaattgggaattg
atgtcattcatcatgctgcactgtaaccatgttgagatctcagtcagtgt
ctttgagatgattggatgtctgtgatactcaaccagattatttgtttgtg
gagttcactgtcagtactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27394271_27395399
seq2: B6Ng01-201D19.g_64_1182 (reverse)

seq1  CAGTACTGACAGTGAACTTCACAACACATTATTCTTGTTGAGTTATCACA  50
      |||||||||||||||||| |||||   | || ||| |||||| |||||||
seq2  CAGTACTGACAGTGAACTCCACAAACAAATAATCTGGTTGAG-TATCACA  49

seq1  GACATCAAATCATCTTCAAAGACACTGACTGAGGATCTCAACATGGTTAC  100
      |||||| ||||||| ||||||||||||||||| |||||||||||||||| 
seq2  GACATCCAATCATC-TCAAAGACACTGACTGA-GATCTCAACATGGTTA-  96

seq1  CAGTGGCAGCATGGATGAATGACATCAATTTCCCAATTCCCTTGGCCAGT  150
      |||| ||||||| ||||||||||||||| |||||||||||  ||||||||
seq2  CAGT-GCAGCAT-GATGAATGACATCAA-TTCCCAATTCC--TGGCCAGT  141

seq1  TTCCCTAGCATTTGGGAGCACTGATATCAATTTGTTCCAAAGTGTTAGTA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGCA-TTGGGAGCACTGATATCAATTTGTTCCAAAGTGTTAGTA  190

seq1  GTGATCACTCACTGCCTGGTTGCCTGTGTGAGTAGGAATCTGAAATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCACTCACTGCCTGGTTGCCTGTGTGAGTAGGAATCTGAAATATAC  240

seq1  CATGGTATCAGTTTCCAGGGATATCAAGAGAGTTTCAAATGTAGATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATCAGTTTCCAGGGATATCAAGAGAGTTTCAAATGTAGATATGA  290

seq1  ACATGTAAAGAAACTCCCCTAGTGGCACTTTGAATCATGATATCAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAAGAAACTCCCCTAGTGGCACTTTGAATCATGATATCAAAATG  340

seq1  TTTACAGGTAGCAGTATACTTGACATAAATTTGACTGAAGCATTGATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTAGCAGTATACTTGACATAAATTTGACTGAAGCATTGATAAC  390

seq1  AGACATCAACAATGATTCCATTGGCAGTAGGAGACAGTGATATTAATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAACAATGATTCCATTGGCAGTAGGAGACAGTGATATTAATGTG  440

seq1  GGCCCATAAGGCAGAAGGTATCACTGCCATGGTGCTGGATGCCTGAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATAAGGCAGAAGGTATCACTGCCATGGTGCTGGATGCCTGAAGTA  490

seq1  TATGTAACAAGCAACAGTGTCCATTGCCACACTATATGTGACCGCCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACAAGCAACAGTGTCCATTGCCACACTATATGTGACCGCCACAT  540

seq1  AATATATCTCAGAACACATAATTCAACATGATGTGACACAGCAGAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTCAGAACACATAATTCAACATGATGTGACACAGCAGAATTTA  590

seq1  TCTAAAATTTCACATAAGTCTGTGCTAGCCTCAGGGATCCTTGACATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTTCACATAAGTCTGTGCTAGCCTCAGGGATCCTTGACATTAA  640

seq1  CAATAATCCAAGAAGCATCATGGACTTTGGGTTTAAACATGGCTACTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCCAAGAAGCATCATGGACTTTGGGTTTAAACATGGCTACTTGA  690

seq1  GGCAGAATGGATGATTGATATCACCATAGTTTCTACAGGAACTATGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATGGATGATTGATATCACCATAGTTTCTACAGGAACTATGTAAT  740

seq1  AGTGATATTAACATGGTAACCAGGGACAGCAGGGATCACAGGCAACCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTAACATGGTAACCAGGGACAGCAGGGATCACAGGCAACCAGG  790

seq1  TTGTGAATGGTAGCATGGACCTAGGGCAATCCCATGGGGTGTGTAGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATGGTAGCATGGACCTAGGGCAATCCCATGGGGTGTGTAGACAG  840

seq1  TTATATATCAATGACATCAACCTCAATTCACAGGGCAGAATAAATCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATCAATGACATCAACCTCAATTCACAGGGCAGAATAAATCATTG  890

seq1  TCATAATTGCCTCATTTAGTTGCAGGATAAATCACTGATATCCACATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTGCCTCATTTAGTTGCAGGATAAATCACTGATATCCACATTAT  940

seq1  TTCAGGTGGCAGTAAAGATCTTGCACATTACATAGTCAACATCATGCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGGCAGTAAAGATCTTGCACATTACATAGTCAACATCATGCAAT  990

seq1  GTATTCATGTATCAGTGAAATCAACAGAATTTGTTGTTGCTGTTAGGATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATGTATCAGTGAAATCAACAGAATTTGTTGTTGCTGTTAGGATC  1040

seq1  TTAGATATCAATCTGATCTCCATTATTGAGAACACTTACCTCAATATAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATCAATCTGATCTCCATTATTGAGAACACTTACCTCAATATAAC  1090

seq1  CTATCATTTCACTATGGGCCTTTGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  CTATCATTTCACTATGGGCCTTTGAATTC  1119