BAC Information

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BAC

Clone NameB6Ng01-203M05
ChromosomeX (Build37)
Map Location 154,349,759 - 154,351,014
singlet/doubletsinglet
Overlap geneCnksr2
Upstream geneLOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34
Downstream geneEG667483, LOC671033, LOC667487, LOC436243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203M05.bB6Ng01-203M05.g
ACCGA023888GA023889
length1,2361,220
definitionB6Ng01-203M05.b B6Ng01-203M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagtgcgtttcctgcctctatgatgtttgaatgaaagattcag
agatacatacacatgcacacacactcacaccagtatgtattgcaatatga
cagcttacagttctttcattctttggtgttatattttggctcaaaataca
acaaccctaatagaaatgcaataaaataagaacttaatatccagtatatt
aatttccgatactctaaaatcaatttactatgaaggaagaacaaataatt
ggtatgtttttcaatatactttaattttaaaatatcctaacagtagaaat
gaacttcaaaacactttcaaataatacaagtttttaataaaaagtaatct
taaattttattgtttttcttctactttaaggttactaattatactttaac
tttggtaatctatatagattttgtttgtttgtttattatttactttcttt
ccccaacacctgaaaacaaggaaaaaaggaattgcagtcaactttttaca
agaatatttaaatatgccttaagtacgaggtaaagactaatagaattttt
atttttcatgaacaatcgcccaaaactgtgaatttcttttctagtagatt
taagattagctatgccaacttccttcaaatttctattacctctatattcc
tattttcaagaaggagttgctattaatatcatcatttaatgtgagttact
atattggaaaattaatataagaaaaaaagtgtatctttttatttctattt
tcaacaaggagttgctattaataagagttaatgtgagccatcatgctaca
aaactaatataagaaaaaggcttaaaatgttcaaatagatatcaggctag
gttatgttaccctggtccaattaactgaactgctataaaatagatacaac
ttgttcttacagagcaaggaagaatgtttccattacgttgctaaattcaa
ctgtttattttattgataaataaactagaggaagtcttcaaggggtttat
tgtgtggatgctatctggcttatacaaattaaagctcatagtacatattc
atatatattgtaatatattctgtactgttttctgcattattgtccagcta
ggcagagtagaaagaattagattatttgagattctatttgaaaatcactt
tggtaaacgggagggttataaatctggagtgtcacaaaagctaataacta
caaatttctgtccagatgcatagcccataaaattaa
gaattccaactcaattcttcaaccaattagaaagagcaatctgcaaattc
atctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataa
aagaacctctggtggaatcaccatgcctgacctaaagctgtactacagag
caattgtgattaaaaaaaaaaaaactgcatggtactggtatattgacaga
cagttagagcaatagaatagaatctaagacccggaaaagaatccacacac
ctatgatcacttgatctttgacaagggagctaaaaccatccagtggaaaa
aggacagcattttcaacaaatggtgctggcacaactggtggttatcatgc
agaagaatgcgaattgatccattcctatctccttttactgagatcaaatc
taagtggattaagaaactccacataaaaccagagacactgaaatttatag
aggagaaagtagggaaaaacctcaaagatatgggtacaggggaaaagttc
ctgaatggcttttactgtaagatggagaatcgataaatgggacctcataa
agttgcaaaggttctgcaaggcaaaagacacagtcaacaagtcaaaaaga
ccaccatcagattggaaaaggatctttacctatcttaaatcaaatagggg
gctaatatccaatatatataaagaactcaagaaggtggactccagaaaat
caaataaccccattaaaaaatggggctcagatctgaacaaagaattctca
actgaggaatacagattggcagagaagcacctgaaaaaatgttcaacatc
attaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctca
caccagtcagaatggctaagatcaaaaattcagtgacagcagatgctggc
gaggttggtggagaaagaggacactcctccattgttggtggattgcagct
tgtacaccactctggaaatcagtctggccggttcctcagaaattggaaat
agtactacccggaggatccagcatacctctcctgggcataatattcagaa
gagtcccactggtaagagactcatgcctcccactatgtcatagcagctat
ttataatagccagaagctgaattccagatgtcacccctcaacagagatgg
atacagaaatgtgtacactcttcaccacaatggggaagtcactatctatt
agctaattttagaggacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_154349759_154351014
seq2: B6Ng01-203M05.b_43_1278

seq1  GAATTCTAAGTGCGTTTCCTGCCTCTATGATGTTTGAATGAAAGATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTGCGTTTCCTGCCTCTATGATGTTTGAATGAAAGATTCAG  50

seq1  AGATACATACACATGCACACACACTCACACCAGTATGTATTGCAATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATACACATGCACACACACTCACACCAGTATGTATTGCAATATGA  100

seq1  CAGCTTACAGTTCTTTCATTCTTTGGTGTTATATTTTGGCTCAAAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTACAGTTCTTTCATTCTTTGGTGTTATATTTTGGCTCAAAATACA  150

seq1  ACAACCCTAATAGAAATGCAATAAAATAAGAACTTAATATCCAGTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCTAATAGAAATGCAATAAAATAAGAACTTAATATCCAGTATATT  200

seq1  AATTTCCGATACTCTAAAATCAATTTACTATGAAGGAAGAACAAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCGATACTCTAAAATCAATTTACTATGAAGGAAGAACAAATAATT  250

seq1  GGTATGTTTTTCAATATACTTTAATTTTAAAATATCCTAACAGTAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTTTTCAATATACTTTAATTTTAAAATATCCTAACAGTAGAAAT  300

seq1  GAACTTCAAAACACTTTCAAATAATACAAGTTTTTAATAAAAAGTAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAAAACACTTTCAAATAATACAAGTTTTTAATAAAAAGTAATCT  350

seq1  TAAATTTTATTGTTTTTCTTCTACTTTAAGGTTACTAATTATACTTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTATTGTTTTTCTTCTACTTTAAGGTTACTAATTATACTTTAAC  400

seq1  TTTGGTAATCTATATAGATTTTGTTTGTTTGTTTATTATTTACTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATCTATATAGATTTTGTTTGTTTGTTTATTATTTACTTTCTTT  450

seq1  CCCCAACACCTGAAAACAAGGAAAAAAGGAATTGCAGTCAACTTTTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACCTGAAAACAAGGAAAAAAGGAATTGCAGTCAACTTTTTACA  500

seq1  AGAATATTTAAATATGCCTTAAGTACGAGGTAAAGACTAATAGAATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTAAATATGCCTTAAGTACGAGGTAAAGACTAATAGAATTTTT  550

seq1  ATTTTTCATGAACAATCGCCCAAAACTGTGAATTTCTTTTCTAGTAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATGAACAATCGCCCAAAACTGTGAATTTCTTTTCTAGTAGATT  600

seq1  TAAGATTAGCTATGCCAACTTCCTTCAAATTTCTATTACCTCTATATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTAGCTATGCCAACTTCCTTCAAATTTCTATTACCTCTATATTCC  650

seq1  TATTTTCAAGAAGGAGTTGCTATTAATATCATCATTTAATGTGAGTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAGAAGGAGTTGCTATTAATATCATCATTTAATGTGAGTTACT  700

seq1  ATATTGGAAAATTAATATAAGAAAAAAAGTGTATCTTTTTATTTCTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAAAATTAATATAAGAAAAAAAGTGTATCTTTTTATTTCTATTT  750

seq1  TCAACAAGGAGTTGCTATTAATAAGAGTTAATGTGAGCCATCATGCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGGAGTTGCTATTAATAAGAGTTAATGTGAGCCATCATGCTACA  800

seq1  AAACTAATATAAGAAAAAGGCTTAAAATGTTCAAATAGATATCAGGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATATAAGAAAAAGGCTTAAAATGTTCAAATAGATATCAGGCTAG  850

seq1  GTTATGTTACCCTGGTCCAATTAACTGAACTGCTATAAAATAGATACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTACCCTGGTCCAATTAACTGAACTGCTATAAAATAGATACAAC  900

seq1  TTGTTCTTACAGAGCAAGGAAGAATGTTTCCATTACGTTGCTAAATTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTACAGAGCAAGGAAGAATGTTTCCATTACGTTGCTAAATTCAA  950

seq1  CTGTTTATTTTATTGATAAATAAACTAGAGGAAGTTCTTCAAGGGGTTTA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGTTTATTTTATTGATAAATAAACTAGAGGAAG-TCTTCAAGGGGTTTA  999

seq1  TTGTGTGGATGCTATCTGGCTTATACAAATTAAAGCTCATAGTACATATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGATGCTATCTGGCTTATACAAATTAAAGCTCATAGTACATATT  1049

seq1  CAATATATA-TGTAATATATTCTGTACTG-TTTCTGCCATTATTGTCAAG  1098
      | ||||||| ||||||||||||||||||| |||||| |||||||||| ||
seq2  C-ATATATATTGTAATATATTCTGTACTGTTTTCTG-CATTATTGTCCAG  1097

seq1  CTAAGCAGAGTTAGAAAGAA-TAGATTTATTTTGAGAATCATATTAAAAT  1147
      ||| |||||| ||||||||| ||||||   ||||||| || ||||  || 
seq2  CTAGGCAGAG-TAGAAAGAATTAGATT--ATTTGAGATTC-TATTTGAAA  1143

seq1  ATCAACTTGGTAGACCGGGAGGGGTATAAAATCTGGAGTGTAAAAAAAAA  1197
      ||||  |||||| | |||||||| ||| ||||||||||||| | ||||  
seq2  ATCACTTTGGTA-AACGGGAGGGTTAT-AAATCTGGAGTGTCACAAAAGC  1191

seq1  AAAGATTAAATAAAATTTAACAAAATTTCTGGTCAAGAATTGAAATAG--  1245
       ||   ||| ||          |||||||| ||| |||  ||  ||||  
seq2  TAA---TAACTA---------CAAATTTCT-GTCCAGA--TG-CATAGCC  1225

seq1  CATAAAATTAA  1256
      |||||||||||
seq2  CATAAAATTAA  1236