BAC Information

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BAC

Clone NameB6Ng01-204O16
ChromosomeX (Build37)
Map Location 4,982,936 - 4,983,971
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182
Downstream geneMycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10, Bmp15, Shroom4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204O16.bB6Ng01-204O16.g
ACCGA024732GA024733
length1,0491,196
definitionB6Ng01-204O16.b B6Ng01-204O16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgtttagctctgtaccccatttttaattgggttatttccttg
ttggagtctaacttcttgagttctttatatattttggagagccctctgtc
agatatagggttggtgaagatctttccccattctgtagactgttgttttg
tcttattgatggtgggttttgccttacagaagcttttcagtttcatgagg
tcccatttatcaattgttaatcttagagcctgagccactggtgttctgct
taggagtttgtctcctgtaccaacacattcaagacaattcccactttctt
ttctgttagatttagtgtatctggttttatgttgaggtctgtgatctact
tggacttgagttttgtgcagggtgataattatgtatctatttgcattctt
ctacatgcagacatccagttagactagcaccatttgttgaagatgttttc
ttttttttcccattgtacggttttggcttccttattcgtttaaatatctt
ctgcttctttctaccttccctgtgagtctgagattccaattcacactcct
gttatgctgacctctgccttcagcattattatttttctcttctattcctc
ttaaactttatttctattgtttcttacaaggcttctgatttgccaattat
tcttaagcataagctattaaattcatccattttttctctttaatactttc
tagcttataattttaatttgatatttttctaattgatatatacctcatta
tgctgtaggattccctgttgaatttctggctgggaatttatttctttgtt
acatataaatatttctgttttataatttagtatagcaatattttttatgg
tcattgtatatttgtttgttttttaatgggttttattttattctttgaaa
aattttatgtacgtacccctgttttatgttcatcttccctaatgccccct
tctaactctccttttgattcttccaacatattccatgttccgatgcatat
atctgccaacttattaagtattaatatccaaattataacagtctagaaa
gaattctcacccgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcaacatcattaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggaagtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcatttcctca
gaaaattggacatagtactaccagaggatcccacaatacctctcctgggc
atatatccagaagatgttccaaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccaatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacagttg
agtaatggagtactactcagctattaaaaagaatgaatttatgaaattcc
taggcaaatggatggatctggaggatatcatcctgtgtgtggtaacccaa
tcacaaaagaactcacatgatatgcactcactgataagtggatattagcc
cagaaacttagaatacccaagatataagatacaatttgataaacacatga
aactcaagaagaacgaagaccaaagtgtggacactttgccccttcttaga
attgggaacaaaacacccatggaaggagtaacagaaacaaagtttggaac
tgagacgaaaggatggaccatctaaagactgccacacctgggtatccctt
ccaataatcagcctccaaacgctgacaccatttgcataagccagcaagaa
tttgctgaaaggaccgtgatatagctgtctctttgtgatgctatgctggt
gcctgtcaaacacagaagtggatgctccacagtcaattattggatggaac
acaggacccccagtagaggagctagtgaagtacccaaggagctaaggggt
ctgcaccctataaggtggaacacattatgaactaacccagtacccctgga
gctctcatgtcctctagctgcatattatagcaagaaggattgacctagtt
agcaatcattgggcaagaagagtcccgtgacctgcctactttatatgcct
ctcattacaagggtaattgtctcaaggggtcccatagaatgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_4982936_4983971
seq2: B6Ng01-204O16.b_47_1095

seq1  GAATTCTCTGTTTAGCTCTGTACCCCATTTTTAATTGGGTTATTTCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGCTCTGTACCCCATTTTTAATTGGGTTATTTCCTTG  50

seq1  TTGGAGTCTAACTTCTTGAGTTCTTTATATATTTTGGAGAGCCCTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCTAACTTCTTGAGTTCTTTATATATTTTGGAGAGCCCTCTGTC  100

seq1  AGATATAGGGTTGGTGAAGATCTTTCCCCATTCTGTAGACTGTTGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGGGTTGGTGAAGATCTTTCCCCATTCTGTAGACTGTTGTTTTG  150

seq1  TCTTATTGATGGTGGGTTTTGCCTTACAGAAGCTTTTCAGTTTCATGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGATGGTGGGTTTTGCCTTACAGAAGCTTTTCAGTTTCATGAGG  200

seq1  TCCCATTTATCAATTGTTAATCTTAGAGCCTGAGCCACTGGTGTTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTATCAATTGTTAATCTTAGAGCCTGAGCCACTGGTGTTCTGCT  250

seq1  TAGGAGTTTGTCTCCTGTACCAACACATTCAAGACAATTCCCACTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTTGTCTCCTGTACCAACACATTCAAGACAATTCCCACTTTCTT  300

seq1  TTCTGTTAGATTTAGTGTATCTGGTTTTATGTTGAGGTCTGTGATCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAGATTTAGTGTATCTGGTTTTATGTTGAGGTCTGTGATCTACT  350

seq1  TGGACTTGAGTTTTGTGCAGGGTGATAATTATGTATCTATTTGCATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGAGTTTTGTGCAGGGTGATAATTATGTATCTATTTGCATTCTT  400

seq1  CTACATGCAGACATCCAGTTAGACTAGCACCATTTGTTGAAGATGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCAGACATCCAGTTAGACTAGCACCATTTGTTGAAGATGTTTTC  450

seq1  TTTTTTTTCCCATTGTACGGTTTTGGCTTCCTTATTCGTTTAAATATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCCATTGTACGGTTTTGGCTTCCTTATTCGTTTAAATATCTT  500

seq1  CTGCTTCTTTCTACCTTCCCTGTGAGTCTGAGATTCCAATTCACACTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTTTCTACCTTCCCTGTGAGTCTGAGATTCCAATTCACACTCCT  550

seq1  GTTATGCTGACCTCTGCCTTCAGCATTATTATTTTTCTCTTCTATTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTGACCTCTGCCTTCAGCATTATTATTTTTCTCTTCTATTCCTC  600

seq1  TTAAACTTTATTTCTATTGTTTCTTACAAGGCTTCTGATTTGCCAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTATTTCTATTGTTTCTTACAAGGCTTCTGATTTGCCAATTAT  650

seq1  TCTTAAGCATAAGCTATTAAATTCATCCATTTTTTCTCTTTAATACTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCATAAGCTATTAAATTCATCCATTTTTTCTCTTTAATACTTTC  700

seq1  TAGCTTATAATTTTAATTTGATATTTTTCTAATTGATATATACCTCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATAATTTTAATTTGATATTTTTCTAATTGATATATACCTCATTA  750

seq1  TGCTGTA-GATTCCCTGTTGAATTTCTGGCTTGGAATTTATTTCTTTG-T  798
      ||||||| ||||||||||||||||||||||| |||||||||||||||| |
seq2  TGCTGTAGGATTCCCTGTTGAATTTCTGGCTGGGAATTTATTTCTTTGTT  800

seq1  ACATATAAATATTTCTGTTTTATAATTTAGTATAGCAATA--TTTTATGG  846
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  ACATATAAATATTTCTGTTTTATAATTTAGTATAGCAATATTTTTTATGG  850

seq1  TCATTGTATATTTGTTTGTTTTTTAAT-GGTTTTA-TTTATTCTTTGAAA  894
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TCATTGTATATTTGTTTGTTTTTTAATGGGTTTTATTTTATTCTTTGAAA  900

seq1  AATTTTATGTACGTA-CCCTG-TTTATGTTCATCTT-CCTAATGCCCCCT  941
      ||||||||||||||| ||||| |||||||||||||| |||||||||||||
seq2  AATTTTATGTACGTACCCCTGTTTTATGTTCATCTTCCCTAATGCCCCCT  950

seq1  TCTAACTCTCCTTTTGATTCTTCCAACATATTCCATGTTCCGATGCATAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCTCCTTTTGATTCTTCCAACATATTCCATGTTCCGATGCATAT  1000

seq1  ATCTGCCAACTTA-TAAGTA-TAATATCCAAATTAT-ACAGTC-AGAAA  1036
      ||||||||||||| |||||| ||||||||||||||| |||||| |||||
seq2  ATCTGCCAACTTATTAAGTATTAATATCCAAATTATAACAGTCTAGAAA  1049