BAC Information

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BAC

Clone NameB6Ng01-205B23
ChromosomeX (Build37)
Map Location 166,025,920 - 166,145,638
singlet/doubletdoublet
Overlap geneMid1
Upstream geneMsl31, Arhgap6, Amelx, Hccs, LOC100040950, BC022960
Downstream gene4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205B23.bB6Ng01-205B23.g
ACCGA024886GA024887
length766481
definitionB6Ng01-205B23.b B6Ng01-205B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,144,941 - 166,145,638)(166,025,920 - 166,026,406)
sequence
gaattctaccataaatattctttggcaagctcttgtaaagctgatatgga
tttagaaaaaaaaaaaagctttacttcaggagtttagtaaactctaatta
tttacctaggtataatttattctaattgaaaaagtatagtttaaaagctg
tccataataatataggccacttgacatcatataggaagttggccagtata
acatacttctataacatagtcaccgtatcacagtatcatttgatttttgt
tttctcacatcattttcttgtatcacacactcaccgagagagagagagag
agagagagagagagagagagagagagagagagagagacagagagacagag
agacagacagagagacagagagacagagacagagagacagagacagagag
acagagacagagagacagagagagagagagagagagcagagttgttggag
attgaacccagaacttcaggtatgcttcaggtatgttaggtaagctatgg
tttgtatgtgaaatgtctgtcataggctcatgagtttggaaatttgattc
ctgttggtagtgctgtttgtggaagtagctgaacctttaggaaataaagc
attcttcttctcctggttgttgtttttctggggttgggggaaatcaacag
gataaaaatcaagagatattttgtaagaaaaacatcaatgtgtaaaatga
ctctatcagattacctgagggaaatctgctggacattttcttgaagaatg
atgtgggactgtgagt
tataaaacactttctcctggacatgacatgtgaccattacattcatgaac
tcataagacctgcacaagatcgattcagtcaaaattcctcaatggacagg
aaagatgctcctgaggtcataacttttgctgagtgatattagcagttgat
gttgctggggtaagggcatttagcagggcagtgggggttgggatgtgaat
actaagaggttattcattttccagtgcatggcctacactcacatatatat
ggaaagcactacttgtataataaaaatagaagaagacatgaagtgaggag
gagatgttttggttataaggtcccaggggacctggagagagggaaagcaa
tgggtaaatatagtcaaaatatactgtgtgcctgcaaaataaatataaca
aataatgtttaaaataacaacaaattacaaactaatctaaaaaaaaccaa
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_166144941_166145638
seq2: B6Ng01-205B23.b_43_740 (reverse)

seq1  ATTTTACACATTGATGTTTTTCTTACAAAATATCTCTTGATTTTTATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACACATTGATGTTTTTCTTACAAAATATCTCTTGATTTTTATCCT  50

seq1  GTTGATTTCCCCCAACCCCAGAAAAACAACAACCAGGAGAAGAAGAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTCCCCCAACCCCAGAAAAACAACAACCAGGAGAAGAAGAATGC  100

seq1  TTTATTTCCTAAAGGTTCAGCTACTTCCACAAACAGCACTACCAACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCTAAAGGTTCAGCTACTTCCACAAACAGCACTACCAACAGGA  150

seq1  ATCAAATTTCCAAACTCATGAGCCTATGACAGACATTTCACATACAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTTCCAAACTCATGAGCCTATGACAGACATTTCACATACAAACC  200

seq1  ATAGCTTACCTAACATACCTGAAGCATACCTGAAGTTCTGGGTTCAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTACCTAACATACCTGAAGCATACCTGAAGTTCTGGGTTCAATCT  250

seq1  CCAACAACTCTGCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTCTCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACTCTGCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTCTCTGTCT  300

seq1  CTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTGTCTCT  350

seq1  CTGTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCGGTGAGTGTGTGATACAAGAAAATGATGTGAGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCGGTGAGTGTGTGATACAAGAAAATGATGTGAGAAAAC  450

seq1  AAAAATCAAATGATACTGTGATACGGTGACTATGTTATAGAAGTATGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAATGATACTGTGATACGGTGACTATGTTATAGAAGTATGTTA  500

seq1  TACTGGCCAACTTCCTATATGATGTCAAGTGGCCTATATTATTATGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCCAACTTCCTATATGATGTCAAGTGGCCTATATTATTATGGACA  550

seq1  GCTTTTAAACTATACTTTTTCAATTAGAATAAATTATACCTAGGTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAACTATACTTTTTCAATTAGAATAAATTATACCTAGGTAAATA  600

seq1  ATTAGAGTTTACTAAACTCCTGAAGTAAAGCTTTTTTTTTTTTCTAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTTTACTAAACTCCTGAAGTAAAGCTTTTTTTTTTTTCTAAATC  650

seq1  CATATCAGCTTTACAAGAGCTTGCCAAAGAATATTTATGGTAGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGCTTTACAAGAGCTTGCCAAAGAATATTTATGGTAGAATTC  698

seq1: chrX_166025920_166026406
seq2: B6Ng01-205B23.g_69_555

seq1  GAATTCTATAAAACACTTTCTCCTGGACATGACATGTGACCATTACATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAACACTTTCTCCTGGACATGACATGTGACCATTACATTC  50

seq1  ATGAACTCATAAGACCTGCACAAGATCGATTCAGTCAAAATTCCTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCATAAGACCTGCACAAGATCGATTCAGTCAAAATTCCTCAATG  100

seq1  GACAGGAAAGATGCTCCTGAGGTCATAACTTTTGCTGAGTGATATTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAAGATGCTCCTGAGGTCATAACTTTTGCTGAGTGATATTAGCA  150

seq1  GTTGATGTTGCTGGGGTAAGGGCATTTAGCAGGGCAGTGGGGGTTGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTGCTGGGGTAAGGGCATTTAGCAGGGCAGTGGGGGTTGGGAT  200

seq1  GTGAATACTAAGAGGTTATTCATTTTCCAGTGCATGGCCTACACTCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACTAAGAGGTTATTCATTTTCCAGTGCATGGCCTACACTCACAT  250

seq1  ATATATGGAAAGCACTACTTGTATAATAAAAATAGAAGAAGACATGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGAAAGCACTACTTGTATAATAAAAATAGAAGAAGACATGAAGT  300

seq1  GAGGAGGAGATGTTTTGGTTATAAGGTCCCAGGGGACCTGGAGAGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGATGTTTTGGTTATAAGGTCCCAGGGGACCTGGAGAGAGGGA  350

seq1  AAGCAATGGGTAAATATAGTCAAAATATACTGTGTGCCTGCAAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGGGTAAATATAGTCAAAATATACTGTGTGCCTGCAAAATAAAT  400

seq1  ATAACAAATAATGTTTAAAATAACAACAAATTACAAACTAATCTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATAATGTTTAAAATAACAACAAATTACAAACTAATCTAAAAAA  450

seq1  AACCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  487
      |||||||||||||||||||||||||||||||||||||
seq2  AACCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  487