BAC Information

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BAC

Clone NameB6Ng01-205D07
ChromosomeX (Build37)
Map Location 71,156,179 - 71,278,987
singlet/doubletdoublet
Overlap geneArhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2
Upstream geneCetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2
Downstream geneOpn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205D07.bB6Ng01-205D07.g
ACCGA024950GA024951
length1,1431,136
definitionB6Ng01-205D07.b B6Ng01-205D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,156,179 - 71,157,312)(71,277,846 - 71,278,987)
sequence
gaattcatagattctagtggtgttaagagtgaggtgtcaggctaccaaca
aagtcaaagtggcccattatactccaactagaaagccaccctctcagtct
gtccttccctcgggctaccacagtcattgctgcctgagtgagcaacaggc
gacccaagttggctaaggaggcgagagggagggcttgggcaggcagttga
ggccaaagaggcttcaagaagcagggcttggactcccttctccaccctgc
tccaggcacccctgagatcagcagcggacacttggggtctcccctgtaaa
ccaggactaaagcaccctctcacctttgacctgtgcgtcatactcaggtt
gtagcccccgctcccgccgcaacttcccgtgcgccgccatggcccaaggc
cgttcgcgacttcgagtcccaatgctcccacgcggaagcgaggcgagacc
gccaagtgcagggactaggggcgccaaggccagcaccctccgcgggcccc
gccccgccagccccgcccccagcacagtccccggaggggcggggcgactt
ggacctggcactgcccgggtgggcctctgaaagtctaggcaccccttttc
aggctcatctctcttgagacaagttgctcctctacctagataccttgagc
ccaaagagtcaacataaagcagcaatgcaagacaacctcaacatgtctgg
gaccacctgctgctgttcctcattatctgcagaaacctatctgtggttcc
cattgtcagacaacacccctatggccactagccctcaatactaatggaca
atggcaccatagctgctccaggctcctaggtggtctgcctcttgaagcct
tcctggacatcagatgccaccctcctttccagagtcatagcccatagtga
ggcctatgggagttcagacagctgaatgggaaagttgtaggctaatgctc
tccctgggccccctgaggggggagggagcggggttcagctacagttccct
tctactcagcccaaaggaaagaactagcctcattttcccatagtagttac
cacttcctggctgccggaagagattatttttgttctctttttcccttcca
tctgtcacctgttaagggaacctataacaaggtgggggctttg
gaattcttaacctcttgctcactggggactgggaagcatcagcacatccc
atatttcaaactctgctccataagtacagtggtgaattttatagacttga
ctttgctgtggggttttaattggtcagttttaatttgggatcccaaagtt
ttaacctccattcaggaagtccttatctagctgcatatcttcatcatatt
ggtatatccttttctgtgtttacagagatgtctcatatctatcgaaatct
gtctgagaagtaccttatcaaagtagcaaatgagacagcagtcttatgct
tccagaaacacccacaggcacgtcccatgtgagctgctgccatgaactgt
cgagtgtgtattgtcttgtgtattttcgttaacgttccccagcttccttc
ctgcggtgtaatcatggaagagtgaaacatcatagaaatcgtctagcact
tcctggccagtccttagtgatcaggaaccgtagttgacagttccaattga
tagcttaagataaaaccatgtttgtctcttatggaatggttagaactaag
tgagagatcttgccccattctgtttgccgaatcatagttggacttttagt
gtatttgtatccatttccttgtgctataaaagcaaaccctgcaaccagct
ttctgtcaggcagtccttttgcctgctctgcttttgatcctcttagtctt
gcttctggttcctccctggagagggaggaggggtcagaagaggaattctg
gaggatccaggatatgtccttctgaactcctgcttcttccagtgacaaaa
ggcccctactgccccaccccaacctgccccatgcactcctctaggacacc
tttccatacttttcacaacacctagccaggttgacaccaagttgtttatt
gtggtctgcttggaattttacctgttaggcttacttagtccaatcaatgg
acttccaagttggtatccctcattctttggagacaacctagctgattaga
tattttacttttggatgcagcaccttggtgccgttttttctttttacttt
ggtttatctgcagcttcctcaacacacaacaccccccacgtactgtaatg
atggactgattccaaactgcaagtggtggtaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71156179_71157312
seq2: B6Ng01-205D07.b_48_1190

seq1  GAATTCATAGATTCTAGTGGTGTTAAGAGTGAGGTGTCAGGCTACCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATTCTAGTGGTGTTAAGAGTGAGGTGTCAGGCTACCAACA  50

seq1  AAGTCAAAGTGGCCCATTATACTCCAACTAGAAAGCCACCCTCTCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAGTGGCCCATTATACTCCAACTAGAAAGCCACCCTCTCAGTCT  100

seq1  GTCCTTCCCTCGGGCTACCACAGTCATTGCTGCCTGAGTGAGCAACAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCCTCGGGCTACCACAGTCATTGCTGCCTGAGTGAGCAACAGGC  150

seq1  GACCCAAGTTGGCTAAGGAGGCGAGAGGGAGGGCTTGGGCAGGCAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAGTTGGCTAAGGAGGCGAGAGGGAGGGCTTGGGCAGGCAGTTGA  200

seq1  GGCCAAAGAGGCTTCAAGAAGCAGGGCTTGGACTCCCTTCTCCACCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGAGGCTTCAAGAAGCAGGGCTTGGACTCCCTTCTCCACCCTGC  250

seq1  TCCAGGCACCCCTGAGATCAGCAGCGGACACTTGGGGTCTCCCCTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCACCCCTGAGATCAGCAGCGGACACTTGGGGTCTCCCCTGTAAA  300

seq1  CCAGGACTAAAGCACCCTCTCACCTTTGACCTGTGCGTCATACTCAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTAAAGCACCCTCTCACCTTTGACCTGTGCGTCATACTCAGGTT  350

seq1  GTAGCCCCCGCTCCCGCCGCAACTTCCCGTGCGCCGCCATGGCCCAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCCCGCTCCCGCCGCAACTTCCCGTGCGCCGCCATGGCCCAAGGC  400

seq1  CGTTCGCGACTTCGAGTCCCAATGCTCCCACGCGGAAGCGAGGCGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCGCGACTTCGAGTCCCAATGCTCCCACGCGGAAGCGAGGCGAGACC  450

seq1  GCCAAGTGCAGGGACTAGGGGCGCCAAGGCCAGCACCCTCCGCGGGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGCAGGGACTAGGGGCGCCAAGGCCAGCACCCTCCGCGGGCCCC  500

seq1  GCCCCGCCAGCCCCGCCCCCAGCACAGTCCCCGGAGGGGCGGGGCGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCCAGCCCCGCCCCCAGCACAGTCCCCGGAGGGGCGGGGCGACTT  550

seq1  GGACCTGGCACTGCCCGGGTGGGCCTCTGAAAGTCTAGGCACCCCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGCACTGCCCGGGTGGGCCTCTGAAAGTCTAGGCACCCCTTTTC  600

seq1  AGGCTCATCTCTCTTGAGACAAGTTGCTCCTCTACCTAGATACCTTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCATCTCTCTTGAGACAAGTTGCTCCTCTACCTAGATACCTTGAGC  650

seq1  CCAAAGAGTCAACATAAAGCAGCAATGCAAGACAACCTCAACATGTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGTCAACATAAAGCAGCAATGCAAGACAACCTCAACATGTCTGG  700

seq1  GACCACCTGCTGCTGTTCCTCATTATCTGCAGAAACCTATCTGTGGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCTGCTGCTGTTCCTCATTATCTGCAGAAACCTATCTGTGGTTCC  750

seq1  CATTGTCAGACAACACCCCTATGGCCACTAGCCCTCAATACTAATGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCAGACAACACCCCTATGGCCACTAGCCCTCAATACTAATGGACA  800

seq1  ATGGCACCATAGCTGCTCCAGGCTCCTAGGTGGTCTGCCTC-TGAAGCCT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGCACCATAGCTGCTCCAGGCTCCTAGGTGGTCTGCCTCTTGAAGCCT  850

seq1  TCCTGGACATCAGATGCCACCCTCC-TTCCAGAGTCATAGCCCATAGTGA  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCTGGACATCAGATGCCACCCTCCTTTCCAGAGTCATAGCCCATAGTGA  900

seq1  GGCCTATGGGAGTTCAGACAGCTGAATGGG-AAGTTGTAGGCTTATGCTC  947
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GGCCTATGGGAGTTCAGACAGCTGAATGGGAAAGTTGTAGGCTAATGCTC  950

seq1  TCCCTGGGCCCCCTGA-GGGGGAGGGAGCGGGGTTCAGCTACAGTTCCCC  996
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  TCCCTGGGCCCCCTGAGGGGGGAGGGAGCGGGGTTCAGCTACAGTT-CCC  999

seq1  TTCTACTCAGCCCCAAAGGAAAGAACTAGCCTCATTTCCCCATAGGTAGT  1046
      |||||||||| |||||||||||||||||||||||||| |||||| |||||
seq2  TTCTACTCAG-CCCAAAGGAAAGAACTAGCCTCATTTTCCCATA-GTAGT  1047

seq1  TACCACTTCCT-GCTGCCGGAAGAGATTATTTTTG-TCTC-TTTTCCCTT  1093
      ||||||||||| ||||||||||||||||||||||| |||| |||||||||
seq2  TACCACTTCCTGGCTGCCGGAAGAGATTATTTTTGTTCTCTTTTTCCCTT  1097

seq1  CCATCTTGCACCTGT--AGGG-ACCTATACCA--GTGGGGGCTTTG  1134
      ||||||  |||||||  |||| ||||||| ||  ||||||||||||
seq2  CCATCTGTCACCTGTTAAGGGAACCTATAACAAGGTGGGGGCTTTG  1143

seq1: chrX_71277846_71278987
seq2: B6Ng01-205D07.g_67_1202 (reverse)

seq1  GCAGTTACCACCACCTGCAGTTTTGAAATCAGTTCTACA-TACAGGTAAG  49
      |||||||||||||| ||||| |||| ||||||| |  || |||| ||| |
seq2  GCAGTTACCACCACTTGCAG-TTTGGAATCAGTCCATCATTACA-GTACG  48

seq1  TGGGGGGTGGTGGTGGTGGTGAGGGAGCTGCAGATAAAACCCAAGTAAAA  99
      ||||||||| ||   ||| ||||| |||||||||| ||||| ||||||||
seq2  TGGGGGGTGTTG--TGTGTTGAGGAAGCTGCAGAT-AAACCAAAGTAAAA  95

seq1  --GAAAAACGGCACCCAAAGTGCTGCAATCCCAAAAGT-AAATATCTAAT  146
         |||||||||| |||| ||||||||   |||||||| |||||||||||
seq2  AGAAAAAACGGCA-CCAAGGTGCTGCA--TCCAAAAGTAAAATATCTAAT  142

seq1  CAGCCTAGGTTGTCTTCCAAAG-ATGAGGGATACCCAACTTGG-AGTCCA  194
      ||| |||||||||| ||||||| |||||||||| ||||||||| ||||||
seq2  CAG-CTAGGTTGTC-TCCAAAGAATGAGGGATA-CCAACTTGGAAGTCCA  189

seq1  TTTGATTGGACTAAGTAAGCCTAACAGGTAAAATTCCAAGCAGACCACAA  244
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGATTGGACTAAGTAAGCCTAACAGGTAAAATTCCAAGCAGACCACAA  238

seq1  TAAACAACTTGGTGTCAACCTGGCTAGGTGTTGTGAAAAGTATGGAAAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACTTGGTGTCAACCTGGCTAGGTGTTGTGAAAAGTATGGAAAGG  288

seq1  TGTCCTAGAGGAGTGCATGGGGCAGGTTGGGGTGGGGCAGTAGGGGCCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGAGGAGTGCATGGGGCAGGTTGGGGTGGGGCAGTAGGGGCCTT  338

seq1  TTGTCACTGGAAGAAGCAGGAGTTCAGAAGGACATATCCTGGATCCTCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTGGAAGAAGCAGGAGTTCAGAAGGACATATCCTGGATCCTCCA  388

seq1  GAATTCCTCTTCTGACCCCTCCTCCCTCTCCAGGGAGGAACCAGAAGCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTGACCCCTCCTCCCTCTCCAGGGAGGAACCAGAAGCAA  438

seq1  GACTAAGAGGATCAAAAGCAGAGCAGGCAAAAGGACTGCCTGACAGAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGAGGATCAAAAGCAGAGCAGGCAAAAGGACTGCCTGACAGAAAG  488

seq1  CTGGTTGCAGGGTTTGCTTTTATAGCACAAGGAAATGGATACAAATACAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCAGGGTTTGCTTTTATAGCACAAGGAAATGGATACAAATACAC  538

seq1  TAAAAGTCCAACTATGATTCGGCAAACAGAATGGGGCAAGATCTCTCACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCCAACTATGATTCGGCAAACAGAATGGGGCAAGATCTCTCACT  588

seq1  TAGTTCTAACCATTCCATAAGAGACAAACATGGTTTTATCTTAAGCTATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTAACCATTCCATAAGAGACAAACATGGTTTTATCTTAAGCTATC  638

seq1  AATTGGAACTGTCAACTACGGTTCCTGATCACTAAGGACTGGCCAGGAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAACTGTCAACTACGGTTCCTGATCACTAAGGACTGGCCAGGAAG  688

seq1  TGCTAGACGATTTCTATGATGTTTCACTCTTCCATGATTACACCGCAGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGACGATTTCTATGATGTTTCACTCTTCCATGATTACACCGCAGGA  738

seq1  AGGAAGCTGGGGAACGTTAACGAAAATACACAAGACAATACACACTCGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGGGGAACGTTAACGAAAATACACAAGACAATACACACTCGAC  788

seq1  AGTTCATGGCAGCAGCTCACATGGGACGTGCCTGTGGGTGTTTCTGGAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGCAGCAGCTCACATGGGACGTGCCTGTGGGTGTTTCTGGAAG  838

seq1  CATAAGACTGCTGTCTCATTTGCTACTTTGATAAGGTACTTCTCAGACAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACTGCTGTCTCATTTGCTACTTTGATAAGGTACTTCTCAGACAG  888

seq1  ATTTCGATAGATATGAGACATCTCTGTAAACACAGAAAAGGATATACCAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGATAGATATGAGACATCTCTGTAAACACAGAAAAGGATATACCAA  938

seq1  TATGATGAAGATATGCAGCTAGATAAGGACTTCCTGAATGGAGGTTAAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAAGATATGCAGCTAGATAAGGACTTCCTGAATGGAGGTTAAAA  988

seq1  CTTTGGGATCCCAAATTAAAACTGACCAATTAAAACCCCACAGCAAAGTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGATCCCAAATTAAAACTGACCAATTAAAACCCCACAGCAAAGTC  1038

seq1  AAGTCTATAAAATTCACCACTGTACTTATGGAGCAGAGTTTGAAATATGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATAAAATTCACCACTGTACTTATGGAGCAGAGTTTGAAATATGG  1088

seq1  GATGTGCTGATGCTTCCCAGTCCCCAGTGAGCAAGAGGTTAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTGATGCTTCCCAGTCCCCAGTGAGCAAGAGGTTAAGAATTC  1136