MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-206C16
Chromosome	X (Build37)
Map Location	54,607,262 - 54,741,412
singlet/doublet	doublet
Overlap gene	Rbmx, Snord61, Gm364
Upstream gene	Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
Downstream gene	Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Zfp449 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78619 MGI:1925869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039317 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039317
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	6330419J24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320237 MGI:2443645
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	6530403M18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76212 MGI:1923462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039346 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039346
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 104 ESTs, 3 Proteins

name	Ddx26b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236790 MGI:2442593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm648 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270599 MGI:2685494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236792 MGI:2384305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc9a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236794 MGI:2443511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039342 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Fhl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14199 MGI:1298387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Mtap7d3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320923 MGI:2445051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr112 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236798 MGI:2685213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Brs3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12209 MGI:1100501
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htatsf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72459 MGI:1919709
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vgll1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170828 MGI:2655768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd40lg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21947 MGI:88337
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arhgef6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73341 MGI:1920591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbmx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19655 MGI:1343044
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snord61 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:353374 MGI:2148805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm364 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245423 MGI:2685210
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 10 Proteins

name	Gpr101 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245424 MGI:2685211
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aldoa-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385362
definition	note : aldolase A pseudogene pseudo : _no_value

name	EG666441 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666441 MGI:3645536
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC666447 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Zic3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22773 MGI:106676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp449 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130694 GeneID:78619 MGI:1925869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 449 transcript_id : NM_030139.3

name	LOC100039317 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271636 GeneID:100039317
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039317 transcript_id : XM_001472449.1

name	6330419J24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271634 GeneID:320237 MGI:2443645
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 6330419J24 gene transcript_id : XM_001472650.1

name	LOC100039346 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271639 GeneID:100039346
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 104 ESTs, 3 Proteins product : hypothetical protein LOC100039346 transcript_id : XM_001472500.1

name	Ddx26b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376260 GeneID:236790 MGI:2442593
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B transcript_id : NM_172779.2

name	Gm648 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803341 GeneID:270599 MGI:2685494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 648, (NCBI) transcript_id : NM_001033372.2

name	Tmem32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803324 GeneID:236792 MGI:2384305
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 32 transcript_id : NM_146234.3

name	Slc9a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802040 GeneID:236794 MGI:2443511
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 9 (sodium/hydrogen exchanger), isoform 6 transcript_id : NM_172780.2

name	Fhl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116517333 GeneID:14199 MGI:1298387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : four and a half LIM domains 1 transcript_id : NM_010211.2

name	Fhl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116517339 GeneID:14199 MGI:1298387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : four and a half LIM domains 1 transcript_id : NM_001077361.1

name	Fhl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116517335 GeneID:14199 MGI:1298387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : four and a half LIM domains 1 transcript_id : NM_001077362.1

name	Mtap7d3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922675 GeneID:320923 MGI:2445051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAP7 domain containing 3 transcript_id : NM_177293.3

name	Gpr112 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:139949095 GeneID:236798 MGI:2685213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 112 transcript_id : NM_001033327.2

name	Brs3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388449 GeneID:12209 MGI:1100501
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bombesin-like receptor 3 transcript_id : NM_009766.3

name	Htatsf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956211 GeneID:72459 MGI:1919709
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HIV TAT specific factor 1 transcript_id : NM_028242.1

name	Vgll1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18875429 GeneID:170828 MGI:2655768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vestigial like 1 homolog (Drosophila) transcript_id : NM_133251.1

name	Cd40lg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15011845 GeneID:21947 MGI:88337
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD40 ligand transcript_id : NM_011616.2

name	Arhgef6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22779884 GeneID:73341 MGI:1920591
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 transcript_id : NM_152801.1

name	Rbmx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981518 GeneID:19655 MGI:1343044
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein, X chromosome transcript_id : NM_011252.2

name	Gm364 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271641 GeneID:245423 MGI:2685210
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 10 Proteins product : gene model 364, (NCBI) transcript_id : XM_141763.7

name	Gpr101 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90855768 GeneID:245424 MGI:2685211
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 101 transcript_id : NM_001033360.2

name	Zic3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117414177 GeneID:22773 MGI:106676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein of the cerebellum 3 transcript_id : NM_009575.2

name	Zfp449 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794208 CCDS:CCDS30143.1 GeneID:78619 MGI:1925869
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : zinc finger protein 449 protein_id : NP_084415.1

name	LOC100039317 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271637 GeneID:100039317
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472499.1

name	6330419J24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271635 GeneID:320237 MGI:2443645
definition	codon_start : 1 product : hypothetical protein LOC320237 protein_id : XP_001472700.1

name	LOC100039346 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271640 GeneID:100039346
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472550.1

name	Ddx26b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370148 CCDS:CCDS30145.1 GeneID:236790 MGI:2442593
definition	codon_start : 1 product : DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B protein_id : NP_766367.1

name	Gm648 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701872 GeneID:270599 MGI:2685494
definition	codon_start : 1 product : hypothetical protein LOC270599 protein_id : NP_001028544.1

name	Tmem32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122803 CCDS:CCDS30147.1 GeneID:236792 MGI:2384305
definition	codon_start : 1 product : transmembrane protein 32 protein_id : NP_666346.1

name	Slc9a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370158 GeneID:236794 MGI:2443511
definition	GO_component : GO:0005789 - endoplasmic reticulum membrane [Evidence ISS]; GO:0005792 - microsome [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0015297 - antiporter activity [Evidence IEA]; GO:0015385 - sodium:hydrogen antiporter activity [Evidence ISS] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence ISS] codon_start : 1 exception : mismatches in translation product : solute carrier family 9 (sodium/hydrogen exchanger), isoform 6 protein_id : NP_766368.1

name	Fhl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116517336 GeneID:14199 MGI:1298387
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : four and a half LIM domains 1 isoform 2 protein_id : NP_001070830.1

name	Fhl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116517334 CCDS:CCDS30148.1 GeneID:14199 MGI:1298387
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : four and a half LIM domains 1 isoform 3 protein_id : NP_034341.2

name	Fhl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116517340 GeneID:14199 MGI:1298387
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : four and a half LIM domains 1 isoform 1 protein_id : NP_001070829.1

name	Mtap7d3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144922676 GeneID:320923 MGI:2445051
definition	codon_start : 1 product : MAP7 domain containing 3 protein_id : NP_796267.2

name	Gpr112 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:139949096 CCDS:CCDS30149.1 GeneID:236798 MGI:2685213
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : G-protein coupled receptor 112 product : G protein-coupled receptor 112 protein_id : NP_001028499.2

name	Brs3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542236 CCDS:CCDS30150.1 GeneID:12209 MGI:1100501
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : bombesin-like receptor 3 protein_id : NP_033896.2

name	Htatsf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956212 GeneID:72459 MGI:1919709
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : HIV TAT specific factor 1 protein_id : NP_082518.1

name	Vgll1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875430 CCDS:CCDS30151.1 GeneID:170828 MGI:2655768
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : vestigial-related factor product : vestigial like 1 homolog protein_id : NP_573514.1

name	Cd40lg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15011846 CCDS:CCDS30152.1 GeneID:21947 MGI:88337
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]; GO:0005625 - soluble fraction [Evidence ISS] GO_function : GO:0005174 - CD40 receptor binding [Evidence ISS]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence ISS]; GO:0042100 - B cell proliferation [Evidence ISS]; GO:0006952 - defense response [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0048305 - immunoglobulin secretion [Evidence IGI]; GO:0006954 - inflammatory response [Evidence ISS]; GO:0045190 - isotype switching [Evidence IDA]; GO:0007159 - leukocyte adhesion [Evidence ISS]; GO:0030168 - platelet activation [Evidence ISS]; GO:0051023 - regulation of immunoglobulin secretion [Evidence IDA]; GO:0007165 - signal transduction [Evidence IDA] [Evidence NAS] codon_start : 1 product : tumor necrosis factor (ligand) superfamily, member 5 protein_id : NP_035746.2

name	Arhgef6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779885 GeneID:73341 MGI:1920591
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : Rac/Cdc42 guanine exchange factor (GEF) 6 product : Rac/Cdc42 guanine nucleotide exchange factor 6 protein_id : NP_690014.1

name	Rbmx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755296 CCDS:CCDS30153.1 GeneID:19655 MGI:1343044
definition	GO_component : GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : RNA binding motif protein, X-linked protein_id : NP_035382.1

name	Gm364 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271642 GeneID:245423 MGI:2685210
definition	codon_start : 1 product : hypothetical protein protein_id : XP_141763.7

name	Gpr101 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701848 CCDS:CCDS30154.1 GeneID:245424 MGI:2685211
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor GPR101 product : G protein-coupled receptor 101 protein_id : NP_001028532.1

name	Zic3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117414178 CCDS:CCDS30155.1 GeneID:22773 MGI:106676
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI]; GO:0007368 - determination of left/right symmetry [Evidence IGI] [Evidence IMP]; GO:0001947 - heart looping [Evidence IGI] [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : zinc finger protein of the cerebellum 3 protein_id : NP_033601.2

name	LOC100039342 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039342
definition	number : 1 pseudo : _no_value

name	LOC100039342 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039342
definition	number : 2 pseudo : _no_value

name	EG666441 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666441
definition	number : 5 pseudo : _no_value

name	EG666441 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666441
definition	number : 4 pseudo : _no_value

name	EG666441 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666441
definition	number : 3 pseudo : _no_value

name	EG666441 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666441
definition	number : 2 pseudo : _no_value

name	EG666441 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666441
definition	number : 1 pseudo : _no_value

name	LOC666447 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666447
definition	number : 3 pseudo : _no_value

name	LOC666447 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666447
definition	number : 2 pseudo : _no_value

name	LOC666447 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666447
definition	number : 1 pseudo : _no_value

name	6530403M18Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149271638 GeneID:76212 MGI:1923462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6530403M18 gene transcript_id : XR_035193.1

name	Snord61 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:86604698 GeneID:353374 MGI:2148805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small nucleolar RNA, C/D box 61 transcript_id : NR_002903.1

clone name	MSMg01-451L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529J22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-410B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119E18
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-206C16.b	B6Ng01-206C16.g
ACC	GA025652	GA025653
length	1,140	1,117
definition	B6Ng01-206C16.b	B6Ng01-206C16.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(54,740,273 - 54,741,412)	(54,607,262 - 54,608,373)
sequence	ggaattctttgagtttctaaccagagccaaaattaaacacaaatgatcag cttatgttctccatttcaaagaagctcaaagctatcttctgatatacact tcttgtaatatgcttcaaagtttagacattgtaagcaaccaggctgtgga gatggctcagtcagtaaagtgtatgccacacaaaaatgagggactgagtt cagatccccagcacccccttaaactctgggtgctgtgggggtacacctct aatcccagtactgggaagacagaaacatgtagactctgaaagttcatcag ccaaataggatggccaattggttagcttcaggttcattaacggtttcaaa aaatactgtgaagactgaggaagatccctggcatgaacatctaacctatg cacatacacacaccccatacacacagagacacaaatataagatatcatta gcattatacataataaaatggaatataaatccagagtacctattagtttt caaatctaattgtgttattataaacatgaaaaaaatcccatttctcagga ttcatgttaaaaaaaaaacccacaatcttataaaagaaaaacacttaata acagaaaattgatcttaatactatggtttaaaacatataaaacaaaattt tttttaaaaagccaaatgttcctcaaagaagttattagctatactgtagc ctaggtaaatgatgaaataatatagtcaccaaaatgataaatataaagac ttattagcagtatagggaaatctttggttgatgattttgggggtgtttgt tggagacaaattcagaactggccctgaaattactagcctcaaacttgagg tgatctttctgcctcagtgtttcaagtgctggtattacaggcatgttcta ccaagactggctgtaatctttatagatattagatataaagaaatttatat cctaacttcccaagcatcacaccaatcaatattggtgtaaactggattag ataaaaatagatcatggacagttagagatacatttatacttcagggatga taaatatagcaaatgttttcttcatattataagacctttccaaatgagtc aggcagtgccacacacaatctttaagtccagcgcttagaa	gaattcacagttgcagaatgagagacatagaaggcttctgtgacaacctc tcccctccactccctgccaaaaggaaacagcctagacaggaagccattga tgagaactcttaaaaattgtcctagggatctcaagtataggtcttcacaa atgatagcttctgatgagggtgcaggtagagaaagacccagtttcctttt aaaaagctggcaactgggagtatggccatgtcccagtgagtatatggaca acacaaattggacttggtattttactactctcctctctctccctctccgc cttctcctcttccaccttttttgggggggaaggtctcaagcgtggtgggg tggacttggaagtgagtgtgattagggtgcatgtgtaaaatgtccaaata atcaacaaaaataatatgttggaaaaagcaactttaaaatgactttaata gaagagatttttttccttctttatgtttatcttgtttgtttctttgtttg ttgtcagacaggggattgctatgtatccaaggctgcaacttgctttgcag gccaggttggcttcctgttctcagtaataatcctgcctctgcctcccaag tcctaggatgtgctaccacacctgctccgagtgatttaacttatggtatt tagaagaaaacagcactcgcctatcagaagaccatttaaaacattccttt ctcatgaaatctgaattccttgtctaccttccccacttagttgaaggtct tgctttgtatttaactcagaagcagtaattcatctatctcaagtcaagca ggctacctgcatcagagctatgtgttctgtcctcccttcctcccactata gcacgctaactgcttatgtgcctctctaatcctgatcttaagcacttgaa cacaggtctagcagttatgttccacatcacctcccacacctctgtgctac cttgtggaggatgtcatggccagataccatggactggggtggcctaaaaa agcaaagctaattttctcacagtgaacattagatagatgtctaccatcaa gatgtcagttcggagagtggaggagaatgacttcatggggtcctgtgaaa aagctactggttagtta
quality values	Open. Hide. 15 11 49 41 39 58 62 62 62 62 49 62 35 62 62 62 62 62 51 62 62 39 24 62 62 62 62 47 37 62 62 45 34 34 22 24 23 24 24 28 36 45 34 54 54 59 59 59 59 62 62 62 62 62 59 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 62 56 56 42 38 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 54 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 54 49 54 62 59 59 62 62 54 42 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 46 49 58 58 58 58 58 49 49 54 58 58 58 58 58 58 58 58 58 49 45 58 58 54 58 58 58 49 54 58 58 58 49 49 49 49 49 58 44 58 44 54 58 54 58 58 58 58 54 58 58 54 58 58 58 58 58 58 58 58 58 54 58 58 58 58 51 58 58 51 58 58 53 58 58 58 58 51 53 58 58 46 49 58 58 42 58 58 54 51 58 54 49 58 58 58 51 58 47 50 58 58 58 51 41 58 54 58 54 58 58 58 58 41 58 58 42 49 58 58 58 58 58 58 49 34 58 58 58 58 42 54 37 32 58 54 49 58 47 49 50 49 46 51 40 49 58 40 58 58 40 54 52 49 44 47 58 40 58 40 52 53 42 51 51 58 42 54 40 53 58 47 53 18 54 38 53 54 53 41 54 31 34 49 51 54 52 49 51 37 53 53 53 53 49 53 53 42 52 53 29 54 54 39 52 51 53 31 49 49 44 52 52 53 53 49 51 47 34 30 44 51 45 53 42 42 23 39 44 40 37 45 53 37 37 54 45 40 54 54 38 41 54 54 30 35 51 35 42 34 45 31 45 41 22 52 53 53 53 53 53 52 52 31 52 33 53 28 52 24 22 30 25 35 17 39 29 33 51 32 32 53 37 29 31 51 30 26 31 31 45 31 46 29 32 30 33 47 30 37 38 31 45 36 42 24 46 38 27 30 17 51 42 31 30 33 31 45 26 41 29 38 32 20 31 31 47 25 26 23 34 23 46 28 32 32 26 19 42 32 48 31 30 19 33 37 31 31 31 36 32 42 21 31 34 35 25 31 21 32 37 25 32 32 29 31 27 30 21 23 30 26 29 15 16 31 24 22 16 27 14 24 26 18 14 14 15 25 19 46 31 10 14 13 14 11 8 7 16 25 17 14 29 24 16 16 14 28 13 20 19 41 13 15 43 32 14 22 22 38 15 11 6 10 14 26 17 10 29 38 24 9 22 19 19 18 26 27 16 20 21 20 34 9 26 32 31 19 28 16 12 24 27 31 32 22 19 20 22 48 28 16 7 15 11 4 6 18 13 21 23 10 6 43 43 37 6 7 15 6 10 23 27 26 22 21 22 7 8 6 19 9 5 28 10 18 11 12 14 5 16 6 27 33 18 17 18 9 22 28 15 17 13 22 40 10 17 18 17 9 3 3 10 6 5 3 4 8 8 18 19 40 14 19 28 11 40 34 7 19 4 15 14 14 10 9 16 20 10 6 10 21 4 3 1 9 21 30 25 5 5 15 25 11 5 7 3 1 3 4 10 9 14 11 6 6 3 2 3 1 3 10 8 9 5 6 4 6 8 16 9 25 24 5 13 6 5 21 25 13 11 4 3 8 22 12 8 5 15 30	Open. Hide. 46 35 44 47 62 47 47 62 59 62 59 43 15 10 11 23 34 28 26 33 38 46 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 49 59 54 54 54 42 54 62 62 59 62 62 62 62 62 54 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 54 49 54 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 56 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 54 54 42 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 52 58 54 54 51 54 58 58 58 58 58 58 58 58 54 54 58 58 58 58 54 46 58 41 52 58 58 47 40 58 54 58 44 58 54 35 58 38 58 54 58 52 54 45 52 58 54 54 49 52 58 54 58 54 54 46 58 51 54 58 41 39 58 51 46 50 54 58 51 53 58 58 51 50 52 51 58 50 46 27 58 58 33 58 58 58 49 50 50 46 58 37 51 58 49 50 49 58 53 53 51 46 50 27 58 54 37 49 18 34 37 51 58 48 40 51 58 54 49 40 50 50 50 50 48 58 37 40 50 50 32 52 41 51 58 50 40 52 51 13 5 5 12 13 40 50 40 50 58 41 53 42 31 50 50 51 53 31 58 58 40 40 28 36 46 29 23 58 50 38 51 50 18 54 29 42 51 39 53 35 49 54 50 54 19 31 20 54 38 34 39 37 51 42 31 15 54 51 33 49 38 32 42 29 41 41 32 28 31 42 40 42 32 42 31 37 32 26 33 37 39 30 21 35 39 37 38 18 54 24 34 23 27 21 26 37 23 27 39 34 37 17 46 19 31 32 24 37 45 32 45 39 34 31 22 33 26 28 32 31 31 51 32 31 40 26 36 42 32 52 34 35 33 30 34 31 32 34 42 31 31 34 29 30 18 32 31 30 31 26 29 30 30 33 33 20 18 19 44 20 19 26 29 38 33 27 26 26 39 28 31 31 29 31 21 33 30 35 33 38 29 31 31 37 31 30 27 27 23 33 15 28 24 26 30 31 33 25 34 31 29 31 31 28 31 29 9 16 30 5 9 32 22 42 31 18 25 27 31 31 46 30 20 29 10 18 29 34 32 20 24 21 27 32 32 31 32 14 30 25 12 5 6 11 25 17 15 22 16 27 33 31 25 20 18 19 7 6 35 15 17 13 16 16 31 20 11 10 19 6 13 28 27 38 29 6 5 5 25 17 16 13 15 39 48 37 34 33 9 22 28 31 23 22 19 25 11 18 32 48 43 25 11 22 15 11 13 7 4 7 9 25 11 23 15 19 23 16 9 17 12 8 7 21 25 12 6 12 4 5 5 9 22 24 11 17 20 9 16 9 18 19 20 8 6 14 11 9 13 8 23 5 7 4 3 9 8 16 9 9 21 9 22 19 12 9 11 13 10 9 14 16 8 18 15 38 3 3 3 11 11 14 9 7 19 40 47 16 6 6 15 9 15 18 5 12 17 4 8 9 4 1 4 7

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_54740273_54741412
seq2: B6Ng01-206C16.b_46_1185 (reverse)

seq1  TTCTAAGCGCTGGGACTAAAGA-TGTGTGTGGCCACTGCCTGAATTCATT  49
      |||||||||||||   |||||| ||||||||| ||||||||| | |||||
seq2  TTCTAAGCGCTGGACTTAAAGATTGTGTGTGG-CACTGCCTG-ACTCATT  48

seq1  T-GAAAGTTCTTATAATATGAAGGAAACATTTGCTTATAATTTTATCAT-  97
      | ||||| ||||||||||||||| |||||||||| ||||  |||||||| 
seq2  TGGAAAGGTCTTATAATATGAAGAAAACATTTGC-TATA--TTTATCATC  95

seq1  CCTGAAGTATAAATGTATCTCTTACTGTCCATGATCTA-TTTTATCTAAT  146
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  CCTGAAGTATAAATGTATCTCTAACTGTCCATGATCTATTTTTATCTAAT  145

seq1  CCAGTTTACACCAATATTGATTGGTGTGATGCTTGGG-AGTTAGGATATA  195
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAGTTTACACCAATATTGATTGGTGTGATGCTTGGGAAGTTAGGATATA  195

seq1  AATTTCTTTATATCTAATATCTATAAAGATTACAGCCAGTCTTGGTAGAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTATATCTAATATCTATAAAGATTACAGCCAGTCTTGGTAGAA  245

seq1  CATGCCTGTAATACCAGCACTTGAAACACTGAGGCAGAAAGATCACCTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAATACCAGCACTTGAAACACTGAGGCAGAAAGATCACCTCA  295

seq1  AGTTTGAGGCTAGTAATTTCAGGGCCAGTTCTGAATTTGTCTCCAACAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGCTAGTAATTTCAGGGCCAGTTCTGAATTTGTCTCCAACAAA  345

seq1  CACCCCCAAAATCATCAACCAAAGATTTCCCTATACTGCTAATAAGTCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAAAATCATCAACCAAAGATTTCCCTATACTGCTAATAAGTCTT  395

seq1  TATATTTATCATTTTGGTGACTATATTATTTCATCATTTACCTAGGCTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATCATTTTGGTGACTATATTATTTCATCATTTACCTAGGCTAC  445

seq1  AGTATAGCTAATAACTTCTTTGAGGAACATTTGGCTTTTTAAAAAAAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGCTAATAACTTCTTTGAGGAACATTTGGCTTTTTAAAAAAAATT  495

seq1  TTGTTTTATATGTTTTAAACCATAGTATTAAGATCAATTTTCTGTTATTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATATGTTTTAAACCATAGTATTAAGATCAATTTTCTGTTATTA  545

seq1  AGTGTTTTTCTTTTATAAGATTGTGGGTTTTTTTTTTAACATGAATCCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTCTTTTATAAGATTGTGGGTTTTTTTTTTAACATGAATCCTG  595

seq1  AGAAATGGGATTTTTTTCATGTTTATAATAACACAATTAGATTTGAAAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGATTTTTTTCATGTTTATAATAACACAATTAGATTTGAAAAC  645

seq1  TAATAGGTACTCTGGATTTATATTCCATTTTATTATGTATAATGCTAATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGTACTCTGGATTTATATTCCATTTTATTATGTATAATGCTAATG  695

seq1  ATATCTTATATTTGTGTCTCTGTGTGTATGGGGTGTGTGTATGTGCATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATATTTGTGTCTCTGTGTGTATGGGGTGTGTGTATGTGCATAG  745

seq1  GTTAGATGTTCATGCCAGGGATCTTCCTCAGTCTTCACAGTATTTTTTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGTTCATGCCAGGGATCTTCCTCAGTCTTCACAGTATTTTTTGA  795

seq1  AACCGTTAATGAACCTGAAGCTAACCAATTGGCCATCCTATTTGGCTGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTTAATGAACCTGAAGCTAACCAATTGGCCATCCTATTTGGCTGAT  845

seq1  GAACTTTCAGAGTCTACATGTTTCTGTCTTCCCAGTACTGGGATTAGAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCAGAGTCTACATGTTTCTGTCTTCCCAGTACTGGGATTAGAGG  895

seq1  TGTACCCCCACAGCACCCAGAGTTTAAGGGGGTGCTGGGGATCTGAACTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCCCACAGCACCCAGAGTTTAAGGGGGTGCTGGGGATCTGAACTC  945

seq1  AGTCCCTCATTTTTGTGTGGCATACACTTTACTGACTGAGCCATCTCCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCATTTTTGTGTGGCATACACTTTACTGACTGAGCCATCTCCAC  995

seq1  AGCCTGGTTGCTTACAATGTCTAAACTTTGAAGCATATTACAAGAAGTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTTGCTTACAATGTCTAAACTTTGAAGCATATTACAAGAAGTGT  1045

seq1  ATATCAGAAGATAGCTTTGAGCTTCTTTGAAATGGAGAACATAAGCTGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGAAGATAGCTTTGAGCTTCTTTGAAATGGAGAACATAAGCTGAT  1095

seq1  CATTTGTGTTTAATTTTGGCTCTGGTTAGAAACTCAAAGAATTCC  1140
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTTTAATTTTGGCTCTGGTTAGAAACTCAAAGAATTCC  1140

seq1: chrX_54607262_54608373
seq2: B6Ng01-206C16.g_68_1184

seq1  GAATTCACAGTTG-AGAATGAGAGACATAGAAGGCTTCTGTGACAACCTC  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTTGCAGAATGAGAGACATAGAAGGCTTCTGTGACAACCTC  50

seq1  TCCCCTCCACTCCCTGCCAAAAGGAAACAGCCTAGACAGGAAGCCATTGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCACTCCCTGCCAAAAGGAAACAGCCTAGACAGGAAGCCATTGA  100

seq1  TGAGAACTCTTAAAAATTGTCCTAGGGATCTCAAGTATAGGTCTTCACAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCTTAAAAATTGTCCTAGGGATCTCAAGTATAGGTCTTCACAA  150

seq1  ATGATAGCTTCTGATGAGGGTGCAGGTAGAGAAAGACCCAGTTTCCTTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCTTCTGATGAGGGTGCAGGTAGAGAAAGACCCAGTTTCCTTTT  200

seq1  AAAAAGCTGGCAACTGGGAGTATGGCCATGTCCCAGTGAGTATATGGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTGGCAACTGGGAGTATGGCCATGTCCCAGTGAGTATATGGACA  250

seq1  ACACAAATTGGACTTGGTATTTTACTACTCTCCTCTCTCTCCCTCTCCGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTGGACTTGGTATTTTACTACTCTCCTCTCTCTCCCTCTCCGC  300

seq1  CTTCTCCTCTTCCACCTTTTTTGGGGGGGAAGGTCTCAAGCGTGGTGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCTTCCACCTTTTTTGGGGGGGAAGGTCTCAAGCGTGGTGGGG  350

seq1  TGGACTTGGAAGTGAGTGTGATTAGGGTGCATGTGTAAAATGTCCAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGGAAGTGAGTGTGATTAGGGTGCATGTGTAAAATGTCCAAATA  400

seq1  ATCAACAAAAATAATATGTTGGAAAAAGCAACTTTAAAATGACTTTAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAAAATAATATGTTGGAAAAAGCAACTTTAAAATGACTTTAATA  450

seq1  GAAGAGATTTTTTTCCTTCTTTATGTTTATCTTGTTTGTTTCTTTGTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATTTTTTTCCTTCTTTATGTTTATCTTGTTTGTTTCTTTGTTTG  500

seq1  TTGTCAGACAGGGGATTGCTATGTATCCAAGGCTGCAACTTGCTTTGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGACAGGGGATTGCTATGTATCCAAGGCTGCAACTTGCTTTGCAG  550

seq1  GCCAGGTTGGCTTCCTGTTCTCAGTAATAATCCTGCCTCTGCCTCCCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTTGGCTTCCTGTTCTCAGTAATAATCCTGCCTCTGCCTCCCAAG  600

seq1  TCCTAGGATGTGCTACCACACCTGCTCCGAGTGATTTAACTTATGGTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGATGTGCTACCACACCTGCTCCGAGTGATTTAACTTATGGTATT  650

seq1  TAGAAGAAAACAGCACTCGCCTATCAGAAGACCATTTAAAACATTCCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAAACAGCACTCGCCTATCAGAAGACCATTTAAAACATTCCTTT  700

seq1  CTCATGAAATCTGAAATTCCTTGTCTACCTTCCCCACTTAGTTGAAGGTC  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAATCTG-AATTCCTTGTCTACCTTCCCCACTTAGTTGAAGGTC  749

seq1  TTGCTTTGTATTTAACTCAGAAGCAGTAATTCATCTATCTCAAGTCAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTATTTAACTCAGAAGCAGTAATTCATCTATCTCAAGTCAAGC  799

seq1  AGGCTACCTGCATCAGAGCTATGTGTTCTGTCCTCCCTTCCTCCCACTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACCTGCATCAGAGCTATGTGTTCTGTCCTCCCTTCCTCCCACTAT  849

seq1  AGCACGCTAACTGCTTATGTGCCTCTCTAATCCTGATCTTAAGCACTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCTAACTGCTTATGTGCCTCTCTAATCCTGATCTTAAGCACTTGA  899

seq1  ACACAGGTCTAGCAGTTATG-TCCACATCACCTCCCACACCTCTGTGCTA  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACAGGTCTAGCAGTTATGTTCCACATCACCTCCCACACCTCTGTGCTA  949

seq1  CCTTGTTGAGGATGTCATGGCAAGATACCATGGACT-GGGTGGCCTAAAA  997
      |||||| |||||||||||||| |||||||||||||| |||||||||||||
seq2  CCTTGTGGAGGATGTCATGGCCAGATACCATGGACTGGGGTGGCCTAAAA  999

seq1  AAGCAAAGCTAATTTTTCTCACAGTTGAACATTAGATAGATGTCTACCAT  1047
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  AAGCAAAGCTAA-TTTTCTCACAG-TGAACATTAGATAGATGTCTACCAT  1047

seq1  CAAGATGTCAG-TCGGAGAGTGGAGGAG-ATGAC-TCATGGGGCCCTGTG  1094
      ||||||||||| |||||||||||||||| ||||| |||||||| ||||||
seq2  CAAGATGTCAGTTCGGAGAGTGGAGGAGAATGACTTCATGGGGTCCTGTG  1097

seq1  -AAAAGCTACTGG-TAGTTA  1112
       |||||||||||| ||||||
seq2  AAAAAGCTACTGGTTAGTTA  1117

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BAC

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Alignment Information