BAC Information

Click to search

BAC

Clone NameB6Ng01-206K07
ChromosomeX (Build37)
Map Location 80,191,628 - 80,358,268
singlet/doubletdoublet
Overlap geneDmd
Upstream geneEG629310
Downstream geneTsga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206K07.bB6Ng01-206K07.g
ACCGA026007GA026008
length1,2151,144
definitionB6Ng01-206K07.b B6Ng01-206K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,191,628 - 80,192,838)(80,357,109 - 80,358,268)
sequence
gaattcactttgtagaccaggcgggccttgaactcagaaatccgcctgcc
tctgcctccctagtgctggcattaaaggcgtgcaccaccacgcccggcta
aaatatatttttaaaaaaatattcttaaaagtaaacaaagcttttaagat
gcaagaaatagacaattgttattagttcatattccaaaaatactaaacta
taaaaatacataaaaattgatgttagcaaatgttataccttttacttcat
aaatacctgaataattcaaagtattcccatcttgaaattataaggagttc
ttgcatctcagcagtaaaataacaaatacatgacaagcctcagttacaca
actaaagaatgggcaaatgtatgtatagacactgttttgaagtgtttatt
caggagtaagagaaaatgatgagctggtaattaatgtgaaattttactta
aagaagttgaataaattctggatctctaccataagatactacaacagaag
tccatcataccatagtatatgcttaaacattttaagagaataaatctaaa
atactttaccccataaactacagtttcaaaaaggtacattgagagttatt
taatatcatcatccattagaaaatttgaagttatagctgtcatgatattt
tcctacatctttgaaataaaaaataatcagaaattaagaacatgatactg
gtgagaatttgatgagcgtgcattaagtcattcatacagtactgatagat
atccattgctccagtaaatttgccattatctcaaaaatttatgcaaacat
ttgctaaagggcccagaaattataattttggctattaattctactcagaa
aaaaagatatgattttttgtagctttatttttactgatcaaaacttggaa
taaccaaaatgtctttcagttgatgaatagataaacagatgacaacacag
ccatagatagacacactactcagaatattgtaagagctattgataagaat
ttgaatggcattgatgacacattctagagaagcccaccaattgaatgatt
ataattgctaaaacattctgtaaatggcaaaggtaagaaagagggaagac
aatgtggtggtggatgagcctgaaacatgacttggggaggttaagtcata
tgaccattggaaaagataggtattgagacacactcttgagtagtaatggg
aatattggctgcatc

gaattcacacatggaaaaaaagggaattttaaaatacaatgggaaaggaa
ctgaaaataaccagttcagcaaagatcagtaaaagaaccaatacttgagc
aatgaagaacattattgatcagtaaagtaatatgaaaggaaaaagaggtg
tatgttaacttgggtgctaaatttagacaactattcattgattaagacat
aaaatttctagaaaagaatgttctttggggataaaaatattagcctgtat
ggagatctttcactactgaataactgaactgtggagtcaaagtaaaaata
aagtgaattagagtcagtatgatgcaagataaagcaggaaaaaaatctct
gtgttattgatcatagagcttcataaaatgctgatgccagtgaattttca
agataaataattacccaaatttaaacctagagaaaaccttggtattggtg
acacaagtcatgagattgggactttcatgtttcctttgctttctccctta
ttttacctccattgcactattaattagatacacattagtcatttaaactg
aaaagtagaggtttctgaggattttaaaagacaatttatgtaaatatatt
actgtatatgtccccctccaaatagaaaactaacttttttcataagttat
gaaagaatatataaactaactatttttctagttccaattctctcatggca
tcttttgggttttgattaaatgtatgaaatatatttgatagtgacagtgt
aaaatccagtatgaagtgccacagattcaaaattactacttgacctgtat
agaagattgagatgtgtcaactttgaatctggtttataactctattgagt
ttctgcttcaatgacttgcccattggtgagagtgtgttgttgaaatctcc
tactattattgtgtaaagttcaatgtatgtctgagctttagtaacatttt
ttttttttacaaatattggtgctctgagtttggggtatagatgtaagact
ggagacttcctccttggtggattttcttgatgattgtagtggccattccc
atttgctgatatattggctgaagactattttattggtatcctacagcagt
aatggccagtgagctacttcaatcccctttagaagggtaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_80191628_80192838
seq2: B6Ng01-206K07.b_45_1259

seq1  GAATTCACTTTGTAGACCAGGCGGGCCTTGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCGGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCTAGTGCTGGCATTAAAGGCGTGCACCACCACGCCCGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCTAGTGCTGGCATTAAAGGCGTGCACCACCACGCCCGGCTA  100

seq1  AAATATATTTTTAAAAAAATATTCTTAAAAGTAAACAAAGCTTTTAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTTTAAAAAAATATTCTTAAAAGTAAACAAAGCTTTTAAGAT  150

seq1  GCAAGAAATAGACAATTGTTATTAGTTCATATTCCAAAAATACTAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAATAGACAATTGTTATTAGTTCATATTCCAAAAATACTAAACTA  200

seq1  TAAAAATACATAAAAATTGATGTTAGCAAATGTTATACCTTTTACTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACATAAAAATTGATGTTAGCAAATGTTATACCTTTTACTTCAT  250

seq1  AAATACCTGAATAATTCAAAGTATTCCCATCTTGAAATTATAAGGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTGAATAATTCAAAGTATTCCCATCTTGAAATTATAAGGAGTTC  300

seq1  TTGCATCTCAGCAGTAAAATAACAAATACATGACAAGCCTCAGTTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTCAGCAGTAAAATAACAAATACATGACAAGCCTCAGTTACACA  350

seq1  ACTAAAGAATGGGCAAATGTATGTATAGACACTGTTTTGAAGTGTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAATGGGCAAATGTATGTATAGACACTGTTTTGAAGTGTTTATT  400

seq1  CAGGAGTAAGAGAAAATGATGAGCTGGTAATTAATGTGAAATTTTACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTAAGAGAAAATGATGAGCTGGTAATTAATGTGAAATTTTACTTA  450

seq1  AAGAAGTTGAATAAATTCTGGATCTCTACCATAAGATACTACAACAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTGAATAAATTCTGGATCTCTACCATAAGATACTACAACAGAAG  500

seq1  TCCATCATACCATAGTATATGCTTAAACATTTTAAGAGAATAAATCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATACCATAGTATATGCTTAAACATTTTAAGAGAATAAATCTAAA  550

seq1  ATACTTTACCCCATAAACTACAGTTTCAAAAAGGTACATTGAGAGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTACCCCATAAACTACAGTTTCAAAAAGGTACATTGAGAGTTATT  600

seq1  TAATATCATCATCCATTAGAAAATTTGAAGTTATAGCTGTCATGATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATCATCCATTAGAAAATTTGAAGTTATAGCTGTCATGATATTT  650

seq1  TCCTACATCTTTGAAATAAAAAATAATCAGAAATTAAGAACATGATACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATCTTTGAAATAAAAAATAATCAGAAATTAAGAACATGATACTG  700

seq1  GTGAGAATTTGATGAGCGTGCATTAAGTCATTCATACAGTACTGATAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATTTGATGAGCGTGCATTAAGTCATTCATACAGTACTGATAGAT  750

seq1  ATCCATTGCTCCAGTAAATTTGCCATTATCTCAAAAATTTATGCAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGCTCCAGTAAATTTGCCATTATCTCAAAAATTTATGCAAACAT  800

seq1  TTGCTAAAGGGCCCAGAAATTATAATTTTGGCTATTAATTCTACTCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAAGGGCCCAGAAATTATAATTTTGGCTATTAATTCTACTCAGAA  850

seq1  AAAAAGATATGATTTTTTGTAGCTTTATTTTTACTGATCAAAACTTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATATGATTTTTTGTAGCTTTATTTTTACTGATCAAAACTTGGAA  900

seq1  TAACCAAAATGTCTTTCAGTTGATGAATAGATAAACAGATGACAACACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAATGTCTTTCAGTTGATGAATAGATAAACAGATGACAACACAG  950

seq1  CCATAGATAGACACACTACTCAGAATAATTGTAAGAAGCTATTGATAAGA  1000
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CCATAGATAGACACACTACTCAGAAT-ATTGTAAG-AGCTATTGATAAGA  998

seq1  ATTTGAATGGCAATTGATGACACAATTCTAAGAGAAAAGCTCACAAATTG  1050
      ||||||||||| ||||||||||| |||||   ||| |||| ||| |||||
seq2  ATTTGAATGGC-ATTGATGACAC-ATTCT---AGAGAAGCCCACCAATTG  1043

seq1  AATGATTAT-ATTGCTAAAACA-TCTGTAAAATGGCAAA-GTTAGAAAGA  1097
      ||||||||| |||||||||||| ||||| |||||||||| || |||||||
seq2  AATGATTATAATTGCTAAAACATTCTGT-AAATGGCAAAGGTAAGAAAGA  1092

seq1  GGGAAGACAAATGTGTTGGT-GATGAGCCTGAAACATGAC-TGGGGAGGG  1145
      |||||||| |||||| |||| ||||||||||||||||||| |||||||| 
seq2  GGGAAGAC-AATGTGGTGGTGGATGAGCCTGAAACATGACTTGGGGAGGT  1141

seq1  TAAGTCATATGACTAT--GAAAAGATA-GTA-TGAGACA-ACTCTT-AGT  1189
      ||||||||||||| ||  ||||||||| ||| ||||||| |||||| |||
seq2  TAAGTCATATGACCATTGGAAAAGATAGGTATTGAGACACACTCTTGAGT  1191

seq1  AGTAAT-GGAATAGT-GCTGCATC  1211
      |||||| |||||| | ||||||||
seq2  AGTAATGGGAATATTGGCTGCATC  1215


seq1: chrX_80357109_80358268
seq2: B6Ng01-206K07.g_64_1207 (reverse)

seq1  TTCCTTCCCCCTTCTAAGTGGGATTGAAGTTGCTTCACTTGGGCATTACT  50
      ||||||  |||||||||  ||||||||||| || |||| ||| |||||||
seq2  TTCCTT-ACCCTTCTAAAGGGGATTGAAGTAGC-TCAC-TGGCCATTACT  47

seq1  GCTTGTTAGTATA-CAATAAAATAGTCTTTCAGCCAAATATTATCAAGCA  99
      |||   ||| ||| ||||||||||||| ||||||| |||| |||| ||| 
seq2  GCT--GTAGGATACCAATAAAATAGTC-TTCAGCC-AATA-TATC-AGC-  90

seq1  AAATGGGGAATGACACTACAAATTCATCAAAGGAAAAATCCACCAA-GAG  148
      ||||||| |  | ||||||||  |||||||    |||||||||||| |||
seq2  AAATGGGAATGGCCACTACAA--TCATCAA---GAAAATCCACCAAGGAG  135

seq1  GAAGTCTCAGTTCTGAACATCTATACCCCAAACTCAAGAGCACCAATATT  198
      ||||||||   |||  ||||||||||||||||||| ||||||||||||||
seq2  GAAGTCTCCAGTCT-TACATCTATACCCCAAACTC-AGAGCACCAATATT  183

seq1  TGTAAAAAAAAAAAATGTTACTAAAGCTCAGAACATACATTGAACTTTAC  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTAAAAAAAAAAAATGTTACTAAAGCTCAG-ACATACATTGAACTTTAC  232

seq1  ACAATAATAGTAGGAGATTTCAACAACACACTCTCACCAATGGGCAAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATAGTAGGAGATTTCAACAACACACTCTCACCAATGGGCAAGTC  282

seq1  ATTGAAGCAGAAACTCAATAGAGTTATAAACCAGATTCAAAGTTGACACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCAGAAACTCAATAGAGTTATAAACCAGATTCAAAGTTGACACA  332

seq1  TCTCAATCTTCTATACAGGTCAAGTAGTAATTTTGAATCTGTGGCACTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCTTCTATACAGGTCAAGTAGTAATTTTGAATCTGTGGCACTTC  382

seq1  ATACTGGATTTTACACTGTCACTATCAAATATATTTCATACATTTAATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGATTTTACACTGTCACTATCAAATATATTTCATACATTTAATCA  432

seq1  AAACCCAAAAGATGCCATGAGAGAATTGGAACTAGAAAAATAGTTAGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAAGATGCCATGAGAGAATTGGAACTAGAAAAATAGTTAGTTT  482

seq1  ATATATTCTTTCATAACTTATGAAAAAAGTTAGTTTTCTATTTGGAGGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTTTCATAACTTATGAAAAAAGTTAGTTTTCTATTTGGAGGGG  532

seq1  GACATATACAGTAATATATTTACATAAATTGTCTTTTAAAATCCTCAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATACAGTAATATATTTACATAAATTGTCTTTTAAAATCCTCAGAA  582

seq1  ACCTCTACTTTTCAGTTTAAATGACTAATGTGTATCTAATTAATAGTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACTTTTCAGTTTAAATGACTAATGTGTATCTAATTAATAGTGCA  632

seq1  ATGGAGGTAAAATAAGGGAGAAAGCAAAGGAAACATGAAAGTCCCAATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTAAAATAAGGGAGAAAGCAAAGGAAACATGAAAGTCCCAATCT  682

seq1  CATGACTTGTGTCACCAATACCAAGGTTTTCTCTAGGTTTAAATTTGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTGTGTCACCAATACCAAGGTTTTCTCTAGGTTTAAATTTGGGT  732

seq1  AATTATTTATCTTGAAAATTCACTGGCATCAGCATTTTATGAAGCTCTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTATCTTGAAAATTCACTGGCATCAGCATTTTATGAAGCTCTAT  782

seq1  GATCAATAACACAGAGATTTTTTTCCTGCTTTATCTTGCATCATACTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATAACACAGAGATTTTTTTCCTGCTTTATCTTGCATCATACTGAC  832

seq1  TCTAATTCACTTTATTTTTACTTTGACTCCACAGTTCAGTTATTCAGTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCACTTTATTTTTACTTTGACTCCACAGTTCAGTTATTCAGTAG  882

seq1  TGAAAGATCTCCATACAGGCTAATATTTTTATCCCCAAAGAACATTCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATCTCCATACAGGCTAATATTTTTATCCCCAAAGAACATTCTTT  932

seq1  TCTAGAAATTTTATGTCTTAATCAATGAATAGTTGTCTAAATTTAGCACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAATTTTATGTCTTAATCAATGAATAGTTGTCTAAATTTAGCACC  982

seq1  CAAGTTAACATACACCTCTTTTTCCTTTCATATTACTTTACTGATCAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAACATACACCTCTTTTTCCTTTCATATTACTTTACTGATCAATA  1032

seq1  ATGTTCTTCATTGCTCAAGTATTGGTTCTTTTACTGATCTTTGCTGAACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTCATTGCTCAAGTATTGGTTCTTTTACTGATCTTTGCTGAACT  1082

seq1  GGTTATTTTCAGTTCCTTTCCCATTGTATTTTAAAATTCCCTTTTTTTCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTCAGTTCCTTTCCCATTGTATTTTAAAATTCCCTTTTTTTCC  1132

seq1  ATGTGTGAATTC  1160
      ||||||||||||
seq2  ATGTGTGAATTC  1144


| Home | SequenceCutter | Blast | Download |