BAC Information

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BAC

Clone NameB6Ng01-207G11
ChromosomeX (Build37)1 (Build37)
Map Location 61,969,891 - 61,970,91546,315,235 - 46,316,063
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
Downstream geneLOC100040011, Ctag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207G11.bB6Ng01-207G11.g
ACCGA026562GA026563
length1,024918
definitionB6Ng01-207G11.b B6Ng01-207G11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,969,891 - 61,970,915)(46,315,235 - 46,316,063)
sequence
gaattcctttaagaatgatggtatatatatttctactcaaagataagaag
actgaatcatggacagattaaagtagtgcactcaaggtcactaaccaggg
aggagttttcccagaaaaatagttccaaggacatgttgtcctaatgtatg
gcaattcagtttgaatcattctagaaaatatcacattaatatacatgaga
aaaatataattaattttcactcttttttctactcatgcatttccttacct
tttttttttttttctgtttttggacaggctgttattatgcaatggtggaa
gtcctggaatttataataatcctcctgtctcactatgtggagcgttttga
ttgtgaagagggcagtgtcagtgtcaggactcaattattctttacaattg
tttaataatcatcatagataaattacattaaatatttaatatgagatatg
ttacaaattactcaaataaataacataaaaagctacaaattgaatcaatc
attgaagggtatctattttggaagcttacttattcttcacaaggtagaga
ttaactcttaagaacttaatgacaggagcttttgtaaactgatcctattt
cctacctcatgcttcttcctgctttgcataaatgtagtaagttgtgtcac
aggttcttaaccccttgattatcctctgtgatagactatgttccctcaaa
tgttaagccaacatgaaactaattctcttactggtcatcttttatttcag
ttatttggttgcaaccacaggaaaaccatttatcggaaataaattctggg
ttagcgatggggcttgcatctacatttattctggaatccaatctggttta
gacctgtgtagatattttttatttgatttttgttttcttttatctaagtt
tatgttattttttagagacattgttgtttttttagagacatgctttgttt
tctaaaaaaaaaggaccaatatgaaagaaaaggttttggattttgaagga
aagtgatggtgggggaggatgttg

gaattcatagaagatataaaagcatgcataaaaaacaatttttaacttat
atttgggatattgattgttaatgtatttaaaaagatggtatataataggt
caattactaatattttgtaataaccaaacaaattgctgtattgaacatac
actagtcaggtttttaagacacaatttttgttataggtttttaaaaatat
atacgaatatactttacaactttttattagtaccacagttgaaactgtgt
tttgaggtgaaaaacacttcaatcttggctgtctggccttggcctttctc
tcaggcagaagaggctgaaggcagcccaatttgttgtaggccaggaaact
tattccgtgtcttagtgagaacaatatggcaactctggtcgggacatgtg
gaggctcatatggcaaaggtgaatgtggccctctcctgagttcgctgtaa
cgcagcctgccttatggtggcgtctcacaccactatacctctggaaaact
gtgtgtctcagggccccgccccacagcagccagcagctagctgggcccac
gtgggccaacgattggctgggaggatgacaaaaatgactttacaataatg
ttttttctggccaaggaattgttttgggcacagctattatttaattaaca
atgaatataattaataacaattataaaagctttctttattttttgtaaaa
ccttttgtagtaaaataaaaccctaagtaataaaaggatattgtctctga
atcttttgggtgagagcaaggatttaaggtaagctttcctttgagaagca
ttagttaataaaacattttccacttatgaaacaatatacattgaaagatt
aaaacttcttggcttcttgttatagaagcagaatgattaaacattttttt
aatacaatgtagagcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_61969891_61970915
seq2: B6Ng01-207G11.b_35_1058

seq1  GAATTCCTTTAAGAATGATGGTATATATATTTCTACTCAAAGATAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAGAATGATGGTATATATATTTCTACTCAAAGATAAGAAG  50

seq1  ACTGAATCATGGACAGATTAAAGTAGTGCACTCAAGGTCACTAACCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCATGGACAGATTAAAGTAGTGCACTCAAGGTCACTAACCAGGG  100

seq1  AGGAGTTTTCCCAGAAAAATAGTTCCAAGGACATGTTGTCCTAATGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTCCCAGAAAAATAGTTCCAAGGACATGTTGTCCTAATGTATG  150

seq1  GCAATTCAGTTTGAATCATTCTAGAAAATATCACATTAATATACATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCAGTTTGAATCATTCTAGAAAATATCACATTAATATACATGAGA  200

seq1  AAAATATAATTAATTTTCACTCTTTTTTCTACTCATGCATTTCCTTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATTAATTTTCACTCTTTTTTCTACTCATGCATTTCCTTACCT  250

seq1  TTTTTTTTTTTTTCTGTTTTTGGACAGGCTGTTATTATGCAATGGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCTGTTTTTGGACAGGCTGTTATTATGCAATGGTGGAA  300

seq1  GTCCTGGAATTTATAATAATCCTCCTGTCTCACTATGTGGAGCGTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAATTTATAATAATCCTCCTGTCTCACTATGTGGAGCGTTTTGA  350

seq1  TTGTGAAGAGGGCAGTGTCAGTGTCAGGACTCAATTATTCTTTACAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAGAGGGCAGTGTCAGTGTCAGGACTCAATTATTCTTTACAATTG  400

seq1  TTTAATAATCATCATAGATAAATTACATTAAATATTTAATATGAGATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATCATCATAGATAAATTACATTAAATATTTAATATGAGATATG  450

seq1  TTACAAATTACTCAAATAAATAACATAAAAAGCTACAAATTGAATCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTACTCAAATAAATAACATAAAAAGCTACAAATTGAATCAATC  500

seq1  ATTGAAGGGTATCTATTTTGGAAGCTTACTTATTCTTCACAAGGTAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGGTATCTATTTTGGAAGCTTACTTATTCTTCACAAGGTAGAGA  550

seq1  TTAACTCTTAAGAACTTAATGACAGGAGCTTTTGTAAACTGATCCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTAAGAACTTAATGACAGGAGCTTTTGTAAACTGATCCTATTT  600

seq1  CCTACCTCATGCTTCTTCCTGCTTTGCATAAATGTAGTAAGTTGTGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCATGCTTCTTCCTGCTTTGCATAAATGTAGTAAGTTGTGTCAC  650

seq1  AGGTTCTTAACCCCTTGATTATCCTCTGTGATAGACTATGTTCCCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTAACCCCTTGATTATCCTCTGTGATAGACTATGTTCCCTCAAA  700

seq1  TGTTAAGCCAACATGAAACTAATTCTCTTACTGGTCATCTTTTATTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCCAACATGAAACTAATTCTCTTACTGGTCATCTTTTATTTCAG  750

seq1  TTATTTGGTTGCAACCACAGGAAAACCATTTATCGGAAATAAATTCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGTTGCAACCACAGGAAAACCATTTATCGGAAATAAATTCTGGG  800

seq1  TTAGCGATGGGGCTTGCATCTACATTTATTCTGGAATCCAATCTGGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGATGGGGCTTGCATCTACATTTATTCTGGAATCCAATCTGGTTTA  850

seq1  GACCTGTGTAGATATTTTTTATTTGATTTTTGTTTTCTTTTATCTTAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACCTGTGTAGATATTTTTTATTTGATTTTTGTTTTCTTTTATCTAAGTT  900

seq1  TATGTTATTTTTTAGAGACATTGTTGTTTTTTTAGAGACATGCTTTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATTTTTTAGAGACATTGTTGTTTTTTTAGAGACATGCTTTGTTT  950

seq1  TCTAAAAAAAAAAAAGAACAAAAAATGAAAGAAAAGG-TTTGGATTTGTA  999
      |||   |||||||||| ||  || ||||||||||||| |||||||||  |
seq2  TCT---AAAAAAAAAGGAC-CAATATGAAAGAAAAGGTTTTGGATTTTGA  996

seq1  GGAAAAGTGATG--TGGGGAGGATGTGG  1025
       | |||||||||   ||||||||||| |
seq2  AGGAAAGTGATGGTGGGGGAGGATGTTG  1024


seq1: chr1_46315235_46316063
seq2: B6Ng01-207G11.g_66_901

seq1  GAATTCATAGAAGATATAAAAGCATGCAT--AAAACAATTTTTAACTTAT  48
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  GAATTCATAGAAGATATAAAAGCATGCATAAAAAACAATTTTTAACTTAT  50

seq1  ATTTGGGATATTGATTGTTAATCTATTTAAAATGATGGTATGTAATAGGT  98
      |||||||||||||||||||||| ||||||||| |||||||| ||||||||
seq2  ATTTGGGATATTGATTGTTAATGTATTTAAAAAGATGGTATATAATAGGT  100

seq1  CAATTATTAATATTTTATAATAACCAAATAAATTGCTGTATTGAACATAC  148
      |||||| ||||||||| ||||||||||| |||||||||||||||||||||
seq2  CAATTACTAATATTTTGTAATAACCAAACAAATTGCTGTATTGAACATAC  150

seq1  ACTAATCAGGTTTTTAAGACACAATTTTTGTTATAGGTTTTTAAAAA-AT  197
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTAGTCAGGTTTTTAAGACACAATTTTTGTTATAGGTTTTTAAAAATAT  200

seq1  ATACGAATATACTTTACAA-TTTTTATTAGTACCACAGTTGAAACTGTGT  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATACGAATATACTTTACAACTTTTTATTAGTACCACAGTTGAAACTGTGT  250

seq1  TTTGAGGTGAAAACCACTTTGACCTTGGCCATCCGCCCTTGGCCTTTCTC  296
      ||||||||||||| |||||  | ||||||  || | ||||||||||||||
seq2  TTTGAGGTGAAAAACACTTCAATCTTGGCTGTCTGGCCTTGGCCTTTCTC  300

seq1  TCAGGCAGAAGAAGCTGAAGGCAGCCCAATTTGTTGTAGGCCAGAAAATT  346
      |||||||||||| ||||||||||||||||||||||||||||||| ||| |
seq2  TCAGGCAGAAGAGGCTGAAGGCAGCCCAATTTGTTGTAGGCCAGGAAACT  350

seq1  TACTCCGGGTCTTACTGAGAACAATATGGCTACTCTGGTCGGGACATGTG  396
      || |||| |||||| ||||||||||||||| |||||||||||||||||||
seq2  TATTCCGTGTCTTAGTGAGAACAATATGGCAACTCTGGTCGGGACATGTG  400

seq1  GAGGCTC--AGGGCAAATGTGAACTCGGCCCTCTTCTGAGTTCACTGTAG  444
      |||||||  | |||||| |||||   |||||||| |||||||| ||||| 
seq2  GAGGCTCATATGGCAAAGGTGAATGTGGCCCTCTCCTGAGTTCGCTGTAA  450

seq1  GGCTGACCGCCTTATGGAGGCCTCTCGCATCACTATAGCTCTGGGATACT  494
       || | | ||||||||| ||| |||| || ||||||| |||||| | |||
seq2  CGCAGCCTGCCTTATGGTGGCGTCTCACACCACTATACCTCTGGAAAACT  500

seq1  GTGTGTCTCAAGGTCCTGCCCCACAGCAGCCAGCAGCTAGTTGGGCCCAC  544
      |||||||||| || || ||||||||||||||||||||||| |||||||||
seq2  GTGTGTCTCAGGGCCCCGCCCCACAGCAGCCAGCAGCTAGCTGGGCCCAC  550

seq1  GTGGGCCAATGATCAGCTGGGAGGATGAGAAAAATGACTTTATAATAATG  594
      ||||||||| |||  ||||||||||||| ||||||||||||| |||||| 
seq2  GTGGGCCAACGATTGGCTGGGAGGATGACAAAAATGACTTTACAATAAT-  599

seq1  GGTTTTTTTGGCTAAAGAATTGTTTTGGGCACAGCTAATATTTAATTACC  644
      | ||||| |||| || ||||||||||||||||||||| |||||||||| |
seq2  GTTTTTTCTGGCCAAGGAATTGTTTTGGGCACAGCTATTATTTAATTAAC  649

seq1  AATGAATATAATTAATAACAATTATAAAAGCTTTC-TTATTTTTTGCAAA  693
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AATGAATATAATTAATAACAATTATAAAAGCTTTCTTTATTTTTTGTAAA  699

seq1  ACCTTTTGTAGTAAACTAAAACCCTAAGTAATAAAAAGATATTGTCTCTG  743
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  ACCTTTTGTAGTAAAATAAAACCCTAAGTAATAAAAGGATATTGTCTCTG  749

seq1  AATCTTTTGGGTGAGAGAAAGGATTTAAGGTAAAC-TTCCCTTGAGAAGC  792
      ||||||||||||||||| ||||||||||||||| | |||| |||||||||
seq2  AATCTTTTGGGTGAGAGCAAGGATTTAAGGTAAGCTTTCCTTTGAGAAGC  799

seq1  ATTAGTTAATAAAACATTTTCCACTTAGGAAACAATA  829
      ||||||||||||||||||||||||||| |||||||||
seq2  ATTAGTTAATAAAACATTTTCCACTTATGAAACAATA  836


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