BAC Information

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BAC

Clone NameB6Ng01-207L02
ChromosomeX (Build37)
Map Location 135,344,884 - 135,487,471
singlet/doubletdoublet
Overlap geneIl1rapl2, Nrk
Upstream gene1700025D03Rik
Downstream geneSerpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207L02.bB6Ng01-207L02.g
ACCGA026773GA026774
length1,1151,122
definitionB6Ng01-207L02.b B6Ng01-207L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,344,884 - 135,346,004)(135,486,352 - 135,487,471)
sequence
gaattctttgtttagctctgagccccatttttaatggcgatatttgattt
tctgggttccaccttctgtgctaattttttaaatgagcatttccttttcc
actggccagaagcctgaaggatagatatctgaactttaccttgaaaatta
gtactgcccctaaaggcaaaacttacaacatatggagtctgcctgtgaca
aactgtgtgtataaattgttaactcttaggctcagagtactgagcctaaa
tgcataaatacaatttaaattttcagttagttttagctgatatacaaact
ataaagtttatattgatgggatgtttccatgtatgtgtatagcatggtat
ttgtactttaaatgctcttaccagtattacctcaagctcctaggcttctg
ctctgagtatactaaaatcattactattagggggaaagagtctgattatc
taatagatctaagaagagttggtaatttttcatttgtttcactatctgta
tatttctctctcattccctcccactctttctctctctcgtcgtgtgtgtg
tgtatgcatgtgtctgtctgtatttgtacgtggcacaattaccaaattct
gtctaataacactatttttgccttcatggaggcaatatatatatgagaca
atgcacaacgtgtctgtgtatagttacgtatctatgtcagtgttcctatg
tcagggccagagagtgatgtcaagtattctttctaattgcttctgggagt
taatttttcaaattttatacatgaatataatgtatcttggtcatatctgc
cccatactcttcttctatgtcccccattcctctcagcatagctaccatcc
ctgtaccaacttcacatctttcttttttataacccattgagtctaattat
tgctatctactgctcagtacatggaaatggtccaccgtatcatgagcaac
ctgccagtgaccactgccaccaaagaaagtgctcacattctctcagcagc
catcattgccattgctctcagatagggatgggggcattggggttactttc
cctatacacaagaacttttaactgttggatcttgtaacagtcttgcactg
gatattcacagcttc
gaattccaagagcactaattatcagtaggtgaatttcccttcctcaaccc
tgtaatcatctctgtggttacactgtgaggccactcaaagttccatgcaa
ttctcttcggttagaaagcctcaaggcttggaaagatacatgctcgtcca
tgtcagagggcaggggcctattaaaaggaagtggtgccaagactcttgcc
aaactgacacaaggttagtctgtcaggggatattacctagtcctcagtgt
tgctactacactgaaaccttcactaaatacccgttctatatatcccttgt
ggttctactgagctcagaggtgtgaggtgctgaggacaccaagggtttca
tctcctttcttcagtagcaaaccatccaattacaaaaaaccttggctagc
ctaggaaatggattcagagtgaagcagattttgtaagtaaaaagctcccg
aagcaccggaatcaccagacagactaatgttttttcctcttccaaaaatc
tgggacagtcatggtcatgctttagtacaactgtgaaatagtcggaagag
ggccttggcggtttcagtggctttgtagcttaggatctgccctgtaattt
gaggcagttatgtgtgcttatacagcagcttcaaccgactttttattatc
cttgttattactcctgcagggaaaaataggtcaaaatatgaagtaacatc
atttgcaaatggagctgctctctctgacactacaacactcaaacagcaaa
ttgcataaaatggacaataaagttaaaaatgtgtggctagaaatatatgg
atagtggcttctaggtaactaagaggtgtcctcaatagactgctccacca
taagccaggtctagaggtgacaaaaatacaaagccattgaagttcattct
tacaagtaaggtggcatcataaaacttttcagtgttggccattaatagaa
attgaaagtcataaccccgcagcatgaaaagttagctcagagcttagatt
actggctactcttcagaggaacctgggctggctttctagcacccatataa
ggcttgctgacagtcactgttcactcttaggttccagggaatccacacat
cttttgttctatgctagcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_135344884_135346004
seq2: B6Ng01-207L02.b_45_1159

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGCGATATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGCGATATTTGATTT  50

seq1  TCTGGGTTCCACCTTCTGTGCTAATTTTTTAAATGAGCATTTCCTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTCCACCTTCTGTGCTAATTTTTTAAATGAGCATTTCCTTTTCC  100

seq1  ACTGGCCAGAAGCCTGAAGGATAGATATCTGAACTTTACCTTGAAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGAAGCCTGAAGGATAGATATCTGAACTTTACCTTGAAAATTA  150

seq1  GTACTGCCCCTAAAGGCAAAACTTACAACATATGGAGTCTGCCTGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCCCCTAAAGGCAAAACTTACAACATATGGAGTCTGCCTGTGACA  200

seq1  AACTGTGTGTATAAATTGTTAACTCTTAGGCTCAGAGTACTGAGCCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTGTATAAATTGTTAACTCTTAGGCTCAGAGTACTGAGCCTAAA  250

seq1  TGCATAAATACAATTTAAATTTTCAGTTAGTTTTAGCTGATATACAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAATACAATTTAAATTTTCAGTTAGTTTTAGCTGATATACAAACT  300

seq1  ATAAAGTTTATATTGATGGGATGTTTCCATGTATGTGTATAGCATGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTATATTGATGGGATGTTTCCATGTATGTGTATAGCATGGTAT  350

seq1  TTGTACTTTAAATGCTCTTACCAGTATTACCTCAAGCTCCTAGGCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTTAAATGCTCTTACCAGTATTACCTCAAGCTCCTAGGCTTCTG  400

seq1  CTCTGAGTATACTAAAATCATTACTATTAGGGGGAAAGAGTCTGATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTATACTAAAATCATTACTATTAGGGGGAAAGAGTCTGATTATC  450

seq1  TAATAGATCTAAGAAGAGTTGGTAATTTTTCATTTGTTTCACTATCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATCTAAGAAGAGTTGGTAATTTTTCATTTGTTTCACTATCTGTA  500

seq1  TATTTCTCTCTCATTCCCTCCCACTCTTTCTCTCTCTCGTCGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTCTCATTCCCTCCCACTCTTTCTCTCTCTCGTCGTGTGTGTG  550

seq1  TGTATGCATGTGTCTGTCTGTATTTGTACGTGGCACAATTACCAAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCATGTGTCTGTCTGTATTTGTACGTGGCACAATTACCAAATTCT  600

seq1  GTCTAATAACACTATTTTTGCCTTCATGGAGGCAATATATATATGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATAACACTATTTTTGCCTTCATGGAGGCAATATATATATGAGACA  650

seq1  ATGCACAACGTGTCTGTGTATAGTTACGTATCTATGTCAGTGTTCCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAACGTGTCTGTGTATAGTTACGTATCTATGTCAGTGTTCCTATG  700

seq1  TCAGGGCCAGAGAGTGATGTCAAGTATTCTTTCTAATTGCTTCTGGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCAGAGAGTGATGTCAAGTATTCTTTCTAATTGCTTCTGGGAGT  750

seq1  TAATTTTTCAAATTTTATACATGAATATAATGTATCTTGGTCATATCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCAAATTTTATACATGAATATAATGTATCTTGGTCATATCTGC  800

seq1  CCCATACTCTTCTTCTATGTCCCCCATTCCTCTCAGCATAGCTACCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACTCTTCTTCTATGTCCCCCATTCCTCTCAGCATAGCTACCATCC  850

seq1  CTGTACCAACTTCACATCTTTCTTTTTTATAACCCATTGAGTCTAATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCAACTTCACATCTTTCTTTTTTATAACCCATTGAGTCTAATTAT  900

seq1  TGCTATCTACTGCTCAGGTACATGG-AATGGTCCACCGTATCATGAGCAA  949
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TGCTATCTACTGCTCA-GTACATGGAAATGGTCCACCGTATCATGAGCAA  949

seq1  CCTGCCAGTGACCACTGCCACCAAAGAAAAGTGGCTCACATTCTCTCAGC  999
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  CCTGCCAGTGACCACTGCCACCAAAG-AAAGT-GCTCACATTCTCTCAGC  997

seq1  AGCCATCATTTGCCATTTGCTCCTCAGATAGGGAT-GGGGCATTGGGG-T  1047
      |||||||| |||||| ||||| ||||||||||||| |||||||||||| |
seq2  AGCCATCA-TTGCCA-TTGCT-CTCAGATAGGGATGGGGGCATTGGGGTT  1044

seq1  ACCTTCCCTATACCACCAGGAAACTTTTAACTGTTTTGATCTTGTACAGG  1097
      || ||||||||| ||| ||  |||||||||||| || |||||||||   |
seq2  ACTTTCCCTATA-CACAAG--AACTTTTAACTG-TTGGATCTTGTAACAG  1090

seq1  TCTTGCACT-GATAATCACAGCTTC  1121
      ||||||||| |||| ||||||||||
seq2  TCTTGCACTGGATATTCACAGCTTC  1115

seq1: chrX_135486352_135487471
seq2: B6Ng01-207L02.g_64_1185 (reverse)

seq1  AGATGCTAGCATAGAACAAAAGATGGTGTTGGATCCCCTGGAAC--TAGA  48
      |||||||||||||||||||||||| ||| ||||| |||||||||   |||
seq2  AGATGCTAGCATAGAACAAAAGAT-GTG-TGGATTCCCTGGAACCTAAGA  48

seq1  GTGACAGGTGACTGTCAGCCAGCC-TATATGGGTGCTAGAAACCAAGCCC  97
      ||||   |||||||||||| |||| ||||||||||||||||| | |||||
seq2  GTGAACAGTGACTGTCAGCAAGCCTTATATGGGTGCTAGAAAGCCAGCCC  98

seq1  AGG-TCCTCTGAAAGAGTAGCCAGTATTCTTAGCCTCTGAGCTAACTTTT  146
      ||| ||||||| |||||||||||||| ||| || ||||||||||||||||
seq2  AGGTTCCTCTG-AAGAGTAGCCAGTAATCTAAG-CTCTGAGCTAACTTTT  146

seq1  CATGCCTGC-GGGTTATGACTTTCAATTTCTATTAATGGCCAACACTG-A  194
      |||| |||| |||||||||||||||||||||||||||||||||||||| |
seq2  CATG-CTGCGGGGTTATGACTTTCAATTTCTATTAATGGCCAACACTGAA  195

seq1  AAGTTTTATGATGCCACC-TACTTGTAAGAATGAACTTCAATGGCTTTGT  243
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTTTTATGATGCCACCTTACTTGTAAGAATGAACTTCAATGGCTTTGT  245

seq1  ATTTTTGTCACCTCTAGACCTGGCTTATGGTGGAGCAGTCTATTGAGGAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTCACCTCTAGACCTGGCTTATGGTGGAGCAGTCTATTGAGGAC  295

seq1  ACCTCTTAGTTACCTAGAAGCCACTATCCATATATTTCTAGCCACACATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTAGTTACCTAGAAGCCACTATCCATATATTTCTAGCCACACATT  345

seq1  TTTAACTTTATTGTCCATTTTATGCAATTTGCTGTTTGAGTGTTGTAGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTTATTGTCCATTTTATGCAATTTGCTGTTTGAGTGTTGTAGTG  395

seq1  TCAGAGAGAGCAGCTCCATTTGCAAATGATGTTACTTCATATTTTGACCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGAGCAGCTCCATTTGCAAATGATGTTACTTCATATTTTGACCT  445

seq1  ATTTTTCCCTGCAGGAGTAATAACAAGGATAATAAAAAGTCGGTTGAAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCTGCAGGAGTAATAACAAGGATAATAAAAAGTCGGTTGAAGC  495

seq1  TGCTGTATAAGCACACATAACTGCCTCAAATTACAGGGCAGATCCTAAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATAAGCACACATAACTGCCTCAAATTACAGGGCAGATCCTAAGC  545

seq1  TACAAAGCCACTGAAACCGCCAAGGCCCTCTTCCGACTATTTCACAGTTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCCACTGAAACCGCCAAGGCCCTCTTCCGACTATTTCACAGTTG  595

seq1  TACTAAAGCATGACCATGACTGTCCCAGATTTTTGGAAGAGGAAAAAACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGCATGACCATGACTGTCCCAGATTTTTGGAAGAGGAAAAAACA  645

seq1  TTAGTCTGTCTGGTGATTCCGGTGCTTCGGGAGCTTTTTACTTACAAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTGTCTGGTGATTCCGGTGCTTCGGGAGCTTTTTACTTACAAAAT  695

seq1  CTGCTTCACTCTGAATCCATTTCCTAGGCTAGCCAAGGTTTTTTGTAATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCACTCTGAATCCATTTCCTAGGCTAGCCAAGGTTTTTTGTAATT  745

seq1  GGATGGTTTGCTACTGAAGAAAGGAGATGAAACCCTTGGTGTCCTCAGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTTGCTACTGAAGAAAGGAGATGAAACCCTTGGTGTCCTCAGCA  795

seq1  CCTCACACCTCTGAGCTCAGTAGAACCACAAGGGATATATAGAACGGGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACCTCTGAGCTCAGTAGAACCACAAGGGATATATAGAACGGGTA  845

seq1  TTTAGTGAAGGTTTCAGTGTAGTAGCAACACTGAGGACTAGGTAATATCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAAGGTTTCAGTGTAGTAGCAACACTGAGGACTAGGTAATATCC  895

seq1  CCTGACAGACTAACCTTGTGTCAGTTTGGCAAGAGTCTTGGCACCACTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGACTAACCTTGTGTCAGTTTGGCAAGAGTCTTGGCACCACTTC  945

seq1  CTTTTAATAGGCCCCTGCCCTCTGACATGGACGAGCATGTATCTTTCCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATAGGCCCCTGCCCTCTGACATGGACGAGCATGTATCTTTCCAA  995

seq1  GCCTTGAGGCTTTCTAACCGAAGAGAATTGCATGGAACTTTGAGTGGCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGGCTTTCTAACCGAAGAGAATTGCATGGAACTTTGAGTGGCCT  1045

seq1  CACAGTGTAACCACAGAGATGATTACAGGGTTGAGGAAGGGAAATTCACC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTAACCACAGAGATGATTACAGGGTTGAGGAAGGGAAATTCACC  1095

seq1  TACTGATAATTAGTGCTCTTGGAATTC  1120
      |||||||||||||||||||||||||||
seq2  TACTGATAATTAGTGCTCTTGGAATTC  1122