BAC Information

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BAC

Clone NameB6Ng01-208I02
ChromosomeX (Build37)
Map Location 42,693,605 - 42,806,736
singlet/doubletdoublet
Overlap geneLOC100040038
Upstream geneWdr40c, Wdr40b, LOC665585, 1110059M19Rik
Downstream geneEG385346, LOC100040075, Actrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208I02.bB6Ng01-208I02.g
ACCGA027369GA027370
length1,1601,063
definitionB6Ng01-208I02.b B6Ng01-208I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,805,559 - 42,806,736)(42,693,605 - 42,694,666)
sequence
gaattctttgttcagttctgagccccattttttaatggtgttatttgatt
ttctggagtccaccctcttccgttctttatatatatcggatactagtccc
ctatctgatttaggataggtaaagatcctttcccaatccgttggtggtct
ttttgtcttattgacagtatcttttgtcttgcagaagctttgtagtttca
tgaggtcccatttgtcaattctccatcttacagcgcaagccattgatgtt
ctattcaggaatttttcccctatgcccatatctttgaggcttttccccac
tttctcctctataagtttcagtgactctgtttttttgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcgatttgc
attcttctacatgataacaaccagttgtaccatgtttaaggacaatgaaa
cctttagtcccttactacaggattctcagcttattatttagtgagagtgg
caaatgaagaaaacactaaccctgtctatgataaggaagccatggaaaat
actttgttttaaaaacattatagaattttcacattatgattttaagcaaa
aaatagaatatcaaaggatgaatatgtgttacataaaaatggcatcattt
tgtaggagacatttaagttttgttctctctcatatttctaactgaatttg
tccatgaatgtaatgcactatcacaagtgtaccagcaagaactgagtagg
aactgcttagctactaaatatctagttaagaagctgtggatcaggtaatt
ttctacacagggagaagatcctaattattctctcttcctatgacattgct
tccctgctcaggattagtttctcacaagcagatgagaaagacaagtgact
gtggtacacagaagtatgcaaaacctacacagttgctatcagagaacttg
cttagtagcatatgggccctgtactatactataaataggtgttacagcat
agtaagaataagttgaaagcaaaccatggagttgaaatttcacctatcat
ttatattttagaataaatcatttattccatttatcatctattttctgctg
taaagtatatatactttcttcatttttcggctaatacttcgttttgaata
gaatagattt

gaattcttgtggggcaggccagcgtgtaaatggagacagttgtgtgggtt
tgggggtaataaaagaggaagaggcaggggcagtgggaagagagacagaa
gactaggggtgggttaagggggaggaggctgggccttagcctgtatctca
gaagagaggggagaagcagattggtatcttggatggggtgggagggccaa
agactcgggcagctcaatcatgatggatgactcagggtccaaatccccag
ataaaagaggatttgtgggtgctgtaaccctggccaacatgatttgggct
gctgagcatagactacagagggaggggcaggggagaaattcctaaaaatc
ctgaagacaagggtgctcagtccattttctcttatgccaccggaattgtc
aaggtcacggagaacattaagatatagagtgccctctggtggccacttag
attggtcgtctagcatataatggagccaagccacagagcaaagtaagatc
tggccttttggaagcaagttctgagacaaccccaatttgaataaatttca
taacagagatctaagaggtgtctggggattgattttggacccaacagcac
ccatcttcccagcgtttgctggagatgccgagactatggaaatggcttcc
cagttgatagtctagaatcaaacagatagtttaggagggggcagtaacct
cagataagacctctctacatcagaagtttcccccaaacaaatacctgggt
ctttggatagggctgcctctgacatggccataactctacagaggtacata
ccctggacccagaattaggcaatagcttgggacaggttactttccaagtt
cccaaactttgatgtttctaacagagaaaaacaagaaaattaggaagaag
tggttcctcacatgaccaggaaggacctgggccactggctggggaactgg
actttcttcaaggtttcagcatcaagatgttagggtttcttcggccagaa
aatagccatcagccagattaagtaaacctggaagttaattgtcaatgggc
tcctgtgatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42805559_42806736
seq2: B6Ng01-208I02.b_47_1206 (reverse)

seq1  AAATCTATTCTATACAAAAAAAGAAGTATTTAACACAAAAAAAGGAAAGA  50
      ||||||||||||| |  |||| ||||||||  |  | ||||| |  ||||
seq2  AAATCTATTCTATTC--AAAACGAAGTATT--AGCCGAAAAATG--AAGA  44

seq1  AATTAATATTATA-ATTTTACAGGCAGGAAAAATAAGATGATAAAATGAA  99
      || ||    |||| | |||||| ||||  ||||| ||||||||||  |||
seq2  AAGTA----TATATACTTTACA-GCAG--AAAAT-AGATGATAAATGGAA  86

seq1  TAAATGATTTA-TCTAAAAAATTAATAAATGATAGGTGAAATTTCAACTC  148
      ||||||||||| |||||||     ||||||||||||||||||||||||||
seq2  TAAATGATTTATTCTAAAA----TATAAATGATAGGTGAAATTTCAACTC  132

seq1  CATGGTTTTGCTTTCAACTTATTCTTACTATTGCTGTTAACACCTATTTT  198
      ||||| |||||||||||||||||||||||| ||||| ||||||||| |||
seq2  CATGG-TTTGCTTTCAACTTATTCTTACTA-TGCTG-TAACACCTA-TTT  178

seq1  ATAGTATAGTACAGGG-CCATATGCTACTAAGCAAGTTCTCTGATAGCAA  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAGTATAGTACAGGGCCCATATGCTACTAAGCAAGTTCTCTGATAGCAA  228

seq1  CTGTGTAGGTTTTGCATAC-TCTGTGTACCACAGTCACTTGTCTTTCTCA  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTGTAGGTTTTGCATACTTCTGTGTACCACAGTCACTTGTCTTTCTCA  278

seq1  TCTGCTTGTGAGAAACTAATCCTGAGCAGGGAAGCAATGTCATAGGAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGTGAGAAACTAATCCTGAGCAGGGAAGCAATGTCATAGGAAGA  328

seq1  GAGAATAATTAGGATCTTCTCCCTGTGTAGAAAATTACCTGATCCACAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATTAGGATCTTCTCCCTGTGTAGAAAATTACCTGATCCACAGC  378

seq1  TTCTTAACTAGATATTTAGTAGCTAAGCAGTTCCTACTCAGTTCTTGCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTAGATATTTAGTAGCTAAGCAGTTCCTACTCAGTTCTTGCTG  428

seq1  GTACACTTGTGATAGTGCATTACATTCATGGACAAATTCAGTTAGAAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTTGTGATAGTGCATTACATTCATGGACAAATTCAGTTAGAAATA  478

seq1  TGAGAGAGAACAAAACTTAAATGTCTCCTACAAAATGATGCCATTTTTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGAACAAAACTTAAATGTCTCCTACAAAATGATGCCATTTTTAT  528

seq1  GTAACACATATTCATCCTTTGATATTCTATTTTTTGCTTAAAATCATAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACATATTCATCCTTTGATATTCTATTTTTTGCTTAAAATCATAAT  578

seq1  GTGAAAATTCTATAATGTTTTTAAAACAAAGTATTTTCCATGGCTTCCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATTCTATAATGTTTTTAAAACAAAGTATTTTCCATGGCTTCCTT  628

seq1  ATCATAGACAGGGTTAGTGTTTTCTTCATTTGCCACTCTCACTAAATAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGACAGGGTTAGTGTTTTCTTCATTTGCCACTCTCACTAAATAAT  678

seq1  AAGCTGAGAATCCTGTAGTAAGGGACTAAAGGTTTCATTGTCCTTAAACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGAATCCTGTAGTAAGGGACTAAAGGTTTCATTGTCCTTAAACA  728

seq1  TGGTACAACTGGTTGTTATCATGTAGAAGAATGCAAATCGATCCATTCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAACTGGTTGTTATCATGTAGAAGAATGCAAATCGATCCATTCCT  778

seq1  ATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACAAAA  828

seq1  AAACAGAGTCACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGTCACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCAAA  878

seq1  GATATGGGCATAGGGGAAAAATTCCTGAATAGAACATCAATGGCTTGCGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGCATAGGGGAAAAATTCCTGAATAGAACATCAATGGCTTGCGC  928

seq1  TGTAAGATGGAGAATTGACAAATGGGACCTCATGAAACTACAAAGCTTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATGGAGAATTGACAAATGGGACCTCATGAAACTACAAAGCTTCT  978

seq1  GCAAGACAAAAGATACTGTCAATAAGACAAAAAGACCACCAACGGATTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACAAAAGATACTGTCAATAAGACAAAAAGACCACCAACGGATTGG  1028

seq1  GAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAGTATCCGATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAGTATCCGATAT  1078

seq1  ATATAAAGAACGGAAGAGGGTGGACTCCAGAAAATCAAATAACACCATTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAACGGAAGAGGGTGGACTCCAGAAAATCAAATAACACCATTA  1128

seq1  AAAAATGGGGCTCAGAACTGAACAAAGAATTC  1178
      ||||||||||||||||||||||||||||||||
seq2  AAAAATGGGGCTCAGAACTGAACAAAGAATTC  1160


seq1: chrX_42693605_42694666
seq2: B6Ng01-208I02.g_66_1128

seq1  GAATTCTTGTGGGGCAGGCCAGCGTGTAAATGGAGACAGTTGTGTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGGGGCAGGCCAGCGTGTAAATGGAGACAGTTGTGTGGGTT  50

seq1  TGGGGGTAATAAAAGAGGAAGAGGCAGGGGCAGTGGGAAGAGAGACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTAATAAAAGAGGAAGAGGCAGGGGCAGTGGGAAGAGAGACAGAA  100

seq1  GACTAGGGGTGGGTTAAGGGGGAGGAGGCTGGGCCTTAGCCTGTATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGGTGGGTTAAGGGGGAGGAGGCTGGGCCTTAGCCTGTATCTCA  150

seq1  GAAGAGAGGGGAGAAGCAGATTGGTATCTTGGATGGGGTGGGAGGGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGGGAGAAGCAGATTGGTATCTTGGATGGGGTGGGAGGGCCAA  200

seq1  AGACTCGGGCAGCTCAATCATGATGGATGACTCAGGGTCCAAATCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGGGCAGCTCAATCATGATGGATGACTCAGGGTCCAAATCCCCAG  250

seq1  ATAAAAGAGGATTTGTGGGTGCTGTAACCCTGGCCAACATGATTTGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAGGATTTGTGGGTGCTGTAACCCTGGCCAACATGATTTGGGCT  300

seq1  GCTGAGCATAGACTACAGAGGGAGGGGCAGGGGAGAAATTCCTAAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCATAGACTACAGAGGGAGGGGCAGGGGAGAAATTCCTAAAAATC  350

seq1  CTGAAGACAAGGGTGCTCAGTCCATTTTCTCTTATGCCACCGGAATTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAAGGGTGCTCAGTCCATTTTCTCTTATGCCACCGGAATTGTC  400

seq1  AAGGTCACGGAGAACATTAAGATATAGAGTGCCCTCTGGTGGCCACTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACGGAGAACATTAAGATATAGAGTGCCCTCTGGTGGCCACTTAG  450

seq1  ATTGGTCGTCTAGCATATAATGGAGCCAAGCCACAGAGCAAAGTAAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCGTCTAGCATATAATGGAGCCAAGCCACAGAGCAAAGTAAGATC  500

seq1  TGGCCTTTTGGAAGCAAGTTCTGAGACAACCCCAATTTGAATAAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTTGGAAGCAAGTTCTGAGACAACCCCAATTTGAATAAATTTCA  550

seq1  TAACAGAGATCTAAGAGGTGTCTGGGGATTGATTTTGGACCCAACAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGATCTAAGAGGTGTCTGGGGATTGATTTTGGACCCAACAGCAC  600

seq1  CCATCTTCCCAGCGTTTGCTGGAGATGCCGAGACTATGGAAATGGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCCAGCGTTTGCTGGAGATGCCGAGACTATGGAAATGGCTTCC  650

seq1  CAGTTGATAGTCTAGAATCAAACAGATAGTTTAGGAGGGGGCAGTAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATAGTCTAGAATCAAACAGATAGTTTAGGAGGGGGCAGTAACCT  700

seq1  CAGATAAGACCTCTCTACATCAGAAGTTTCCCCCAAACAAATACCT-GGT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGATAAGACCTCTCTACATCAGAAGTTTCCCCCAAACAAATACCTGGGT  750

seq1  CTTTGGATAGGGCTGCCTCTGACATGGCCATAACTCTACAGAGGTACATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATAGGGCTGCCTCTGACATGGCCATAACTCTACAGAGGTACATA  800

seq1  CCCTGGACCCAGAATTAGGCAATAGCTTGGGACAGGTTACTTTCCAAG-T  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCTGGACCCAGAATTAGGCAATAGCTTGGGACAGGTTACTTTCCAAGTT  850

seq1  CCCAAAC-TTGATGTTTCTAACAGAGAAAAACAAGAAAATAAGGAGAAAG  897
      ||||||| |||||||||||||||||||||||||||||||| ||||  |||
seq2  CCCAAACTTTGATGTTTCTAACAGAGAAAAACAAGAAAATTAGGAAGAAG  900

seq1  TGG-TCCTCACATGACCAGGAAGGACCTGGGCCACTGGCTGGGG-ACTGA  945
      ||| |||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TGGTTCCTCACATGACCAGGAAGGACCTGGGCCACTGGCTGGGGAACTGG  950

seq1  AC-TTCTTCCAGGTTTCAGCATCAAGATGTTAGGTTTTC-TCCGCCAGAA  993
      || |||||| |||||||||||||||||||||||| |||| || |||||||
seq2  ACTTTCTTCAAGGTTTCAGCATCAAGATGTTAGGGTTTCTTCGGCCAGAA  1000

seq1  AAATAAGCCAATTCAGCCAGATTAAAGTAAAACTGGAAGGTTTATTTGGC  1043
      ||   |||||  ||||||||||| ||||||| |||||||  ||| ||| |
seq2  AA--TAGCCA--TCAGCCAGATT-AAGTAAACCTGGAAG--TTAATTGTC  1043

seq1  AATGGGCTCCTG-GATGAGT  1062
      |||||||||||| |||||||
seq2  AATGGGCTCCTGTGATGAGT  1063


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