BAC Information

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BAC

Clone NameB6Ng01-209K21
ChromosomeX (Build37)
Map Location 161,517,020 - 161,621,761
singlet/doubletdoublet
Overlap geneGlra2
Upstream geneTmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209K21.bB6Ng01-209K21.g
ACCGA028235GA028236
length1,0651,123
definitionB6Ng01-209K21.b B6Ng01-209K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,517,020 - 161,518,079)(161,620,636 - 161,621,761)
sequence
gaattcagagttttaaatcatttgtctatttggattttgatgcacactgt
gaagtacagacccaatctcaggtttttacccagttgtctctgtgccattt
taaacaggctcagcttcacccaacaggcttcagatgctgattctgcaatg
tgctaaattgtcatgtgtgtttgtccaccataccttgagactgttccatt
aaatgttacttctggtcatgtaccagttccatgtttccaaagtatggtgc
cattgtcaatatatttcaatacacttgtcattcttggttgctcttacttc
tttccaggctttgctgatttattcctatctattttctaatatgactttgc
agtttgtttacctagttacagacacaatatattggcatttattgagatct
tattaaccttatcaaacataatcaaaaatttaatgctgacttattatcta
tcatatactggtattccctagttattgaacattattttattttttggaca
gctagtttatagacacattactgttttgcaaattttgtctgctgtcccct
tttcaagtaattgatcctttcttactctatatgtgttaggaggaggccat
gataaacagactcagtattctcctagttggttcaacagatagctctaact
cggaccacgcagcttccttgtttggaaagtgggagtatcacagtaagtat
aaagttatgaacctgtgaggttaaagtcataagaatgattttccttcctg
ggaaactcagaagacaaaagaaaaagcttatatttacaaaatgccatagg
cacatattttaaggtactactactagaattccacacttgctgcttacaac
agggaagaaattcattattgtcaaaattagctttagctgaaggaatactg
agtacccatcctttccctccctcctctgctcttggcccagatgtaagaat
cacagtgaacggccatcactggaaagagaggcccattggacaatgcaaac
tttatataccccagtacaggggaacgccagggccaaaaagtgggaattgg
gtggggtaaggggaa

gaattcttgtctattatgtgtgccattcacaaaactgtagaattaggttt
tctgaaagccttcatagcttccttttctctctctctctcacccatcctat
tcttcaggtctcctatgtgaaagcaattgacatctggatggcggtatgcc
ttctctttgtgtttgctgccttactggaatatgcagcagtgaactttgtc
tccaggcaacataaggagttccttcgtctccggagacgacagaagaggca
gaataaggtagaattgtctctcagtacggaatcattggaacttggggtgg
ttaaccaagtaatgtaactcaaaaaagagaacacatgagtaagaagatta
tcttaattgttttcataattactcctcaagcaactcatttaaaatgttgg
gtaaggtttgaatagataaaattacaaggcatgcagttaaacttgagttc
caggaaaatacatttaatataactatatacaaagtagtgcatgggatata
catttactaaaattatttattgtcatatgaaattcaaaccttactgggct
ctctgatttttatctgacaatttttatttatttatttatttatttatttt
ggtttttcggaacagggtttctctgtatagccctggcctctctgattttt
atctgacaattttatttatttatttatttatttatttatttatttagatt
ttttggaacagggcttctctgtatagcccttgcctctctgatttttatct
gacaatttttattcattcatttatttatttatttatttatttatttattt
tgatttttcagaacagggtttctctgtatagccctggctgtcctggaact
cactttgtagaccaggctggcctcgaactcagaaatctgcctcccaagtg
ctgggattaaaggcgtgcaccaccacacccgacttatctgacaattttta
ttgggcatatagattaaatttgacaacccattttagaatcattttttttt
cattttagaatctttgattgaatattatatctttatgtgtgtgactgtgt
taatgtactgggttttatgtttcctcaggtactagtatttaatgtacagt
gtcctacattcctagtgttgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161517020_161518079
seq2: B6Ng01-209K21.b_50_1113

seq1  GAATTCAGAGTTTTAAATCATTTGTCTATTTGGATTTTGATGCACACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTTTAAATCATTTGTCTATTTGGATTTTGATGCACACTGT  50

seq1  GAAGTACAGACCCAATCTCAGGTTTTTACCCAGTTGTCTCTGTGCCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACAGACCCAATCTCAGGTTTTTACCCAGTTGTCTCTGTGCCATTT  100

seq1  TAAACAGGCTCAGCTTCACCCAACAGGCTTCAGATGCTGATTCTGCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGCTCAGCTTCACCCAACAGGCTTCAGATGCTGATTCTGCAATG  150

seq1  TGCTAAATTGTCATGTGTGTTTGTCCACCATACCTTGAGACTGTTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATTGTCATGTGTGTTTGTCCACCATACCTTGAGACTGTTCCATT  200

seq1  AAATGTTACTTCTGGTCATGTACCAGTTCCATGTTTCCAAAGTATGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTACTTCTGGTCATGTACCAGTTCCATGTTTCCAAAGTATGGTGC  250

seq1  CATTGTCAATATATTTCAATACACTTGTCATTCTTGGTTGCTCTTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCAATATATTTCAATACACTTGTCATTCTTGGTTGCTCTTACTTC  300

seq1  TTTCCAGGCTTTGCTGATTTATTCCTATCTATTTTCTAATATGACTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGCTTTGCTGATTTATTCCTATCTATTTTCTAATATGACTTTGC  350

seq1  AGTTTGTTTACCTAGTTACAGACACAATATATTGGCATTTATTGAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTACCTAGTTACAGACACAATATATTGGCATTTATTGAGATCT  400

seq1  TATTAACCTTATCAAACATAATCAAAAATTTAATGCTGACTTATTATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACCTTATCAAACATAATCAAAAATTTAATGCTGACTTATTATCTA  450

seq1  TCATATACTGGTATTCCCTAGTTATTGAACATTATTTTATTTTTTGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACTGGTATTCCCTAGTTATTGAACATTATTTTATTTTTTGGACA  500

seq1  GCTAGTTTATAGACACATTACTGTTTTGCAAATTTTGTCTGCTGTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTATAGACACATTACTGTTTTGCAAATTTTGTCTGCTGTCCCCT  550

seq1  TTTCAAGTAATTGATCCTTTCTTACTCTATATGTGTTAGGAGGAGGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTAATTGATCCTTTCTTACTCTATATGTGTTAGGAGGAGGCCAT  600

seq1  GATAAACAGACTCAGTATTCTCCTAGTTGGTTCAACAGATAGCTCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAGACTCAGTATTCTCCTAGTTGGTTCAACAGATAGCTCTAACT  650

seq1  CGGACCACGCAGCTTCCTTGTTTGGAAAGTGGGAGTATCACAGTAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCACGCAGCTTCCTTGTTTGGAAAGTGGGAGTATCACAGTAAGTAT  700

seq1  AAAGTTATGAACCTGTGAGGTTAAAGTCATAAGAATGATTTTCCTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGAACCTGTGAGGTTAAAGTCATAAGAATGATTTTCCTTCCTG  750

seq1  GGAAACTCAGAAGACAAAAGAAAAAGCTTATATTTACAAAATGCCATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCAGAAGACAAAAGAAAAAGCTTATATTTACAAAATGCCATAGG  800

seq1  CACATATTTTAAGGTACTACTACTAGAATTCCACACTTGCTGCTTACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTTTAAGGTACTACTACTAGAATTCCACACTTGCTGCTTACAAC  850

seq1  AGGGAAGAAATTCATTATTGTCAAAATTAGCTTTAGCTGAAGGAATACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAAATTCATTATTGTCAAAATTAGCTTTAGCTGAAGGAATACTG  900

seq1  AGTACCCATCCTTTCCCTCCCTCCTCTGCTCTTGGCCCAGATGTAAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCATCCTTTCCCTCCCTCCTCTGCTCTTGGCCCAGATGTAAGAAT  950

seq1  CACAGTGAACGGCCATCACTGGAAAGAGAGGCCCATTGGAC-ATGCAAAC  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACAGTGAACGGCCATCACTGGAAAGAGAGGCCCATTGGACAATGCAAAC  1000

seq1  TTTATATACCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAA-TGG  1048
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTATATACCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAATTGG  1050

seq1  GTGGG--TAGGGGA  1060
      |||||   ||||||
seq2  GTGGGGTAAGGGGA  1064


seq1: chrX_161620636_161621761
seq2: B6Ng01-209K21.g_64_1186 (reverse)

seq1  TCACAACACTAGGAATGTTGAGAACCACTG-ACA-TAAATACAGATTAAC  48
      ||||||||||||||||||  || | ||||| ||| |||||||  | || |
seq2  TCACAACACTAGGAATGT--AGGA-CACTGTACATTAAATAC-TAGTACC  46

seq1  TGAGGGAAAACATAAAACCAGTTACATAAACACAGTCACACACATAAAGA  98
      |||||  ||||||||||||   ||||| ||||||||||||||||||||| 
seq2  TGAGG--AAACATAAAACCCAGTACATTAACACAGTCACACACATAAAG-  93

seq1  ATATAATTATTCAATC-AAGATTCTAAAATG-AAAAAAAATGATTCTAAA  146
      |||||| ||||||||| |||||||||||||| ||||||||||||||||||
seq2  ATATAA-TATTCAATCAAAGATTCTAAAATGAAAAAAAAATGATTCTAAA  142

seq1  AT-GGTTGTCAATTTTAATCTATATGCCCAATTAAAATTGTCAGATAAGT  195
      || ||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  ATGGGTTGTCAAATTTAATCTATATGCCCAATAAAAATTGTCAGATAAGT  192

seq1  CGGGTGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGATTTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGATTTC  242

seq1  TGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  292

seq1  CTATACAGAGAAACCCTGTTCTGAAAAATCAAAATAAATAAATAAATAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCCTGTTCTGAAAAATCAAAATAAATAAATAAATAAA  342

seq1  TAAATAAATAAATGAATGAATAAAAATTGTCAGATAAAAATCAGAGAGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATGAATGAATAAAAATTGTCAGATAAAAATCAGAGAGGC  392

seq1  AAGGGCTATACAGAGAAGCCCTGTTCCAAAAAATCTAAATAAATAAATAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTATACAGAGAAGCCCTGTTCCAAAAAATCTAAATAAATAAATAA  442

seq1  ATAAATAAATAAATAAATAAAATTGTCAGATAAAAATCAGAGAGGCCAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAAATTGTCAGATAAAAATCAGAGAGGCCAGG  492

seq1  GCTATACAGAGAAACCCTGTTCCGAAAAACCAAAATAAATAAATAAATAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAGAAACCCTGTTCCGAAAAACCAAAATAAATAAATAAATAA  542

seq1  ATAAATAAAAATTGTCAGATAAAAATCAGAGAGCCCAGTAAGGTTTGAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAATTGTCAGATAAAAATCAGAGAGCCCAGTAAGGTTTGAAT  592

seq1  TTCATATGACAATAAATAATTTTAGTAAATGTATATCCCATGCACTACTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGACAATAAATAATTTTAGTAAATGTATATCCCATGCACTACTT  642

seq1  TGTATATAGTTATATTAAATGTATTTTCCTGGAACTCAAGTTTAACTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATAGTTATATTAAATGTATTTTCCTGGAACTCAAGTTTAACTGCA  692

seq1  TGCCTTGTAATTTTATCTATTCAAACCTTACCCAACATTTTAAATGAGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTAATTTTATCTATTCAAACCTTACCCAACATTTTAAATGAGTT  742

seq1  GCTTGAGGAGTAATTATGAAAACAATTAAGATAATCTTCTTACTCATGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGGAGTAATTATGAAAACAATTAAGATAATCTTCTTACTCATGTG  792

seq1  TTCTCTTTTTTGAGTTACATTACTTGGTTAACCACCCCAAGTTCCAATGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTTTGAGTTACATTACTTGGTTAACCACCCCAAGTTCCAATGA  842

seq1  TTCCGTACTGAGAGACAATTCTACCTTATTCTGCCTCTTCTGTCGTCTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTACTGAGAGACAATTCTACCTTATTCTGCCTCTTCTGTCGTCTCC  892

seq1  GGAGACGAAGGAACTCCTTATGTTGCCTGGAGACAAAGTTCACTGCTGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGAAGGAACTCCTTATGTTGCCTGGAGACAAAGTTCACTGCTGCA  942

seq1  TATTCCAGTAAGGCAGCAAACACAAAGAGAAGGCATACCGCCATCCAGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGTAAGGCAGCAAACACAAAGAGAAGGCATACCGCCATCCAGAT  992

seq1  GTCAATTGCTTTCACATAGGAGACCTGAAGAATAGGATGGGTGAGAGAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTGCTTTCACATAGGAGACCTGAAGAATAGGATGGGTGAGAGAGA  1042

seq1  GAGAGAAAAGGAAGCTATGAAGGCTTTCAGAAAACCTAATTCTACAGTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAGGAAGCTATGAAGGCTTTCAGAAAACCTAATTCTACAGTTT  1092

seq1  TGTGAATGGCACACATAATAGACAAGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  TGTGAATGGCACACATAATAGACAAGAATTC  1123


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