BAC Information

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BAC

Clone NameB6Ng01-211M09
ChromosomeX (Build37)
Map Location 40,270,167 - 40,361,072
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneLOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211M09.bB6Ng01-211M09.g
ACCGA029740GA029741
length1,2151,188
definitionB6Ng01-211M09.b B6Ng01-211M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,270,167 - 40,271,377)(40,359,903 - 40,361,072)
sequence
gaattcttccaatggaggagcaagtcacagaaagataagccacagagtga
cagaaattgcaaaccataagtgatcttaaacattttgcttcagtctctca
tctgacagttgatgaaaatgatgttatgttgaagaaagaaaataatcaat
gtcatatacttatttagcagcaaaattggacttgggctcaagatttctaa
cttcaaatcttgtgcctttccactactcacaggtgactattaaaatttgc
aacaaatatcttcgggccattagatattttacacactctccaacatcttt
ccagtttagagcactttataataaaaattcatgtctaaaatgacaattct
tatataactgtgaaagattgaatttattatcatttggattttaaaatgtt
gattcatttttgagtgattttcaataagaatgataattttttttgaaaag
ttctttttaacattaagctaatcaccaaatccaattaaccagaagcccgc
cattttctgagcatttagcctcattaagattttcatattaatagaataca
aactaacatacattcatagtcagggaaaattagctgaaccataaaccaac
tcacaaatagacaaaatgggataatctggagttcttcttagagcagagac
atggtcatacgcaaagattattgtgttgattttgtaaagtttcaattctt
actctgttaataacatttccccaagattctgttacttgcatttaaattgg
gactgcttcctatcatattgccctgccagggttgcacagtctgagataag
atgccatgtaaaagtattttgaataaaaacctatggacacatatatgcat
gtatgtttatatgtacatgcacacatttttacatatatccaatgcattat
ttaaaatccaaggttttgactttgttaaaaatatttagctgttgaaaggc
aaccagtaatgtgttgctacaaagttacctcggttcttgacatagttcac
tacagtagatgacaaaatttgagcgattggacttgtccacacatgcgacc
attattttaattgaattcaggagaaaacagaagattgtgaatatttttat
gccaaagaaataaatttcttaaggggcctaaatatcaatggttgcatttg
atatccaatgaatgaattaggaagtattctaagttaggacccggtttatc
acagtgtaagccctg

gaattcagcactagaattcagcattctctacctcctgattgtataacagg
ttctgtgccttgctctgtcttggtgtcctatataattgacatataaaata
aagtaacacattccttaaattgtttttgtaaggtattctgaaacaacaaa
atagaaagtaactaccatagaaaaatattacttttataaatttaaaatat
ttccagaaaatgaagaaaaattactatacaaaaatagtgtatttggatgc
ttctctttaggactacaaataaaaaaacatttccaagtgtctgatttttt
tctcttaagtttctcctttgattagcacaagtaattaaactaaattaatg
gatgatgctaaaaagaagaaaaacatttcataaactgctgtgccccatcc
tctcagtcttccattgatttttgttgacaggaaaattatctcagccaaaa
ggtcctatgtgcaaatctgtaaggagatttgttttaaaaacgtatcttag
aggtcaccattgcccaaagcaattactttccatgctgttcacccatctaa
gtgatttctttgaaaatttcaagcaattttctagttttcccaagtactag
tacactgtcttataaaatagagcattgtaaatctaggggacattatagaa
ttgtggtgatatgtaaagtaaaagaaatctcttaatgtaacagtgtaggt
actattcaagtgattcttggtccatcagtactttattcaattaagccttt
atgatagaacacaaagctattgacaatgggcactttcaaacagctgagtt
atgaatgtaaattattttacattaactacaatccattatcttcctgtatg
ttcttttgtgttacagaaatattagaaatagaggacagcataaggtatga
gacagtagattgggagaaaaacagttatcatgcgttcattttttaacatc
aatcctgaaaccttatactcttttttgggtctctatttgcctaataacaa
atgtgtacttggctccaggcttcattatggtttacacagcatatatagac
aagtcagcatgcagcttcaaggtatttcagttctttcaatccagttcaaa
agccacttaagaagaagaaatctaaccttcgtaatttgtaaggtacacag
gagactagatatgactcgagatcctctagtggagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_40270167_40271377
seq2: B6Ng01-211M09.b_48_1262

seq1  GAATTCTTCCAATGGAGGAGCAAGTCACAGAAAGATAAGCCACAGAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAATGGAGGAGCAAGTCACAGAAAGATAAGCCACAGAGTGA  50

seq1  CAGAAATTGCAAACCATAAGTGATCTTAAACATTTTGCTTCAGTCTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTGCAAACCATAAGTGATCTTAAACATTTTGCTTCAGTCTCTCA  100

seq1  TCTGACAGTTGATGAAAATGATGTTATGTTGAAGAAAGAAAATAATCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGTTGATGAAAATGATGTTATGTTGAAGAAAGAAAATAATCAAT  150

seq1  GTCATATACTTATTTAGCAGCAAAATTGGACTTGGGCTCAAGATTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATACTTATTTAGCAGCAAAATTGGACTTGGGCTCAAGATTTCTAA  200

seq1  CTTCAAATCTTGTGCCTTTCCACTACTCACAGGTGACTATTAAAATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATCTTGTGCCTTTCCACTACTCACAGGTGACTATTAAAATTTGC  250

seq1  AACAAATATCTTCGGGCCATTAGATATTTTACACACTCTCCAACATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATCTTCGGGCCATTAGATATTTTACACACTCTCCAACATCTTT  300

seq1  CCAGTTTAGAGCACTTTATAATAAAAATTCATGTCTAAAATGACAATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTAGAGCACTTTATAATAAAAATTCATGTCTAAAATGACAATTCT  350

seq1  TATATAACTGTGAAAGATTGAATTTATTATCATTTGGATTTTAAAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTGTGAAAGATTGAATTTATTATCATTTGGATTTTAAAATGTT  400

seq1  GATTCATTTTTGAGTGATTTTCAATAAGAATGATAATTTTTTTTGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTTTTGAGTGATTTTCAATAAGAATGATAATTTTTTTTGAAAAG  450

seq1  TTCTTTTTAACATTAAGCTAATCACCAAATCCAATTAACCAGAAGCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTAACATTAAGCTAATCACCAAATCCAATTAACCAGAAGCCCGC  500

seq1  CATTTTCTGAGCATTTAGCCTCATTAAGATTTTCATATTAATAGAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGAGCATTTAGCCTCATTAAGATTTTCATATTAATAGAATACA  550

seq1  AACTAACATACATTCATAGTCAGGGAAAATTAGCTGAACCATAAACCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACATACATTCATAGTCAGGGAAAATTAGCTGAACCATAAACCAAC  600

seq1  TCACAAATAGACAAAATGGGATAATCTGGAGTTCTTCTTAGAGCAGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATAGACAAAATGGGATAATCTGGAGTTCTTCTTAGAGCAGAGAC  650

seq1  ATGGTCATACGCAAAGATTATTGTGTTGATTTTGTAAAGTTTCAATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATACGCAAAGATTATTGTGTTGATTTTGTAAAGTTTCAATTCTT  700

seq1  ACTCTGTTAATAACATTTCCCCAAGATTCTGTTACTTGCATTTAAATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTAATAACATTTCCCCAAGATTCTGTTACTTGCATTTAAATTGG  750

seq1  GACTGCTTCCTATCATATTGCCCTGCCAGGGTTGCACAGTCTGAGATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTCCTATCATATTGCCCTGCCAGGGTTGCACAGTCTGAGATAAG  800

seq1  ATGCCATGTAAAAGTATTTTGAATAAAAACCTATGGACACATATATGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGTAAAAGTATTTTGAATAAAAACCTATGGACACATATATGCAT  850

seq1  GTATGTTTATATGTACATGCACACATTTTTACATATATCCAATGCATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTATATGTACATGCACACATTTTTACATATATCCAATGCATTAT  900

seq1  TTAAAATCCAAGGTTTTGACTTTGTTAAAAATATTTAGCTGTTGAAAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCAAGGTTTTGACTTTGTTAAAAATATTTAGCTGTTGAAAGGC  950

seq1  AACCAGTAATGTGTTGCTACAAAGTTACCTCGGTTCTTGACATAGTTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTAATGTGTTGCTACAAAGTTACCTCGGTTCTTGACATAGTTCAC  1000

seq1  TACAGTAGATGACAAAATTTGAGCGATTGGAC-TGT-CACACATGAAGGA  1048
      |||||||||||||||||||||||||||||||| ||| ||||||||   ||
seq2  TACAGTAGATGACAAAATTTGAGCGATTGGACTTGTCCACACATG--CGA  1048

seq1  CAATTATTTTAATTGAATTCAGGAG-AAACAGAAGATTGTGAATA-TTTT  1096
      | ||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  CCATTATTTTAATTGAATTCAGGAGAAAACAGAAGATTGTGAATATTTTT  1098

seq1  ATGCCAAAAGAAATTAAATTTTCTAAGGGGGCT-AATATCA--TGTTGTA  1143
      ||||| ||||||| |||||||  ||||||| || |||||||   |||| |
seq2  ATGCC-AAAGAAA-TAAATTTCTTAAGGGGCCTAAATATCAATGGTTGCA  1146

seq1  TTTGATAATTCCATGGATGAATTA-GAAGTAGTCATAAGTTAGCAGCTGT  1192
      |||||| || | ||| |||||||| |||||| || |||||||| | | | 
seq2  TTTGAT-ATCCAATGAATGAATTAGGAAGTATTC-TAAGTTAGGACCCGG  1194

seq1  TTTAT--CAATGTAAGCCCTG  1211
      |||||  || |||||||||||
seq2  TTTATCACAGTGTAAGCCCTG  1215


seq1: chrX_40359903_40361072
seq2: B6Ng01-211M09.g_67_1254 (reverse)

seq1  CAAGCTCCATGAG----TATTGAGTTCATATCTTAGTCTCCTGTGTACCT  46
      |||||||||  ||    | | ||| ||||||| |||||||||||||||||
seq2  CAAGCTCCACTAGAGGATCTCGAG-TCATATC-TAGTCTCCTGTGTACCT  48

seq1  TTTACAATTCCG-AGGTAGGATCTC-TCTCCTAAAGT-GCTTTTTGACTG  93
      |  | |||| || ||||  ||| || ||| || |||| ||||||  ||||
seq2  TACA-AATTACGAAGGTTAGATTTCTTCTTCTTAAGTGGCTTTTGAACTG  97

seq1  AAT--GAAGGACTGAAATA-CTTG-AGCTGCATGCTG-CTTGTCTATAAT  138
       ||   ||| ||||||||| |||| |||||||||||| ||||||||| ||
seq2  GATTGAAAGAACTGAAATACCTTGAAGCTGCATGCTGACTTGTCTAT-AT  146

seq1  ATGCTGTTGTAACCAT-ATG-AGCCTGGAG-CAAGTACACATTTGTTA-T  184
      |||||||   |||||| ||| ||||||||| ||||||||||||||||| |
seq2  ATGCTGTGTAAACCATAATGAAGCCTGGAGCCAAGTACACATTTGTTATT  196

seq1  AGGC-AATAGAGACC--AAAAAGAGTAT-AGGTTTCAGGATTGATGTTTA  230
      |||| ||||||||||  ||||||||||| ||||||||||||||||| |||
seq2  AGGCAAATAGAGACCCAAAAAAGAGTATAAGGTTTCAGGATTGATG-TTA  245

seq1  AAAAATGAACGCATGATAACTG-TTTTCT-CCAATCTACTGTCTCATACC  278
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  AAAAATGAACGCATGATAACTGTTTTTCTCCCAATCTACTGTCTCATACC  295

seq1  TTATGCTGTCCTCTATTTCTAATA-TTCTGTAACACAAAAGAACATACAG  327
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTATGCTGTCCTCTATTTCTAATATTTCTGTAACACAAAAGAACATACAG  345

seq1  GAAGATAATGGATTGTAGTTAATGTAAAATAATTTACATTCATAACTCAG  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAATGGATTGTAGTTAATGTAAAATAATTTACATTCATAACTCAG  395

seq1  CTGTTTGAAAGTGCCCATTGTCAATAGCTTTGTGTTCTATCATAAAGGCT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAAAGTGCCCATTGTCAATAGCTTTGTGTTCTATCATAAAGGCT  445

seq1  TAATTGAATAAAGTACTGATGGACCAAGAATCACTTGAATAGTACCTACA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAATAAAGTACTGATGGACCAAGAATCACTTGAATAGTACCTACA  495

seq1  CTGTTACATTAAGAGATTTCTTTTACTTTACATATCACCACAATTCTATA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACATTAAGAGATTTCTTTTACTTTACATATCACCACAATTCTATA  545

seq1  ATGTCCCCTAGATTTACAATGCTCTATTTTATAAGACAGTGTACTAGTAC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCTAGATTTACAATGCTCTATTTTATAAGACAGTGTACTAGTAC  595

seq1  TTGGGAAAACTAGAAAATTGCTTGAAATTTTCAAAGAAATCACTTAGATG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAACTAGAAAATTGCTTGAAATTTTCAAAGAAATCACTTAGATG  645

seq1  GGTGAACAGCATGGAAAGTAATTGCTTTGGGCAATGGTGACCTCTAAGAT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACAGCATGGAAAGTAATTGCTTTGGGCAATGGTGACCTCTAAGAT  695

seq1  ACGTTTTTAAAACAAATCTCCTTACAGATTTGCACATAGGACCTTTTGGC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTTAAAACAAATCTCCTTACAGATTTGCACATAGGACCTTTTGGC  745

seq1  TGAGATAATTTTCCTGTCAACAAAAATCAATGGAAGACTGAGAGGATGGG  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAATTTTCCTGTCAACAAAAATCAATGGAAGACTGAGAGGATGGG  795

seq1  GCACAGCAGTTTATGAAATGTTTTTCTTCTTTTTAGCATCATCCATTAAT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGTTTATGAAATGTTTTTCTTCTTTTTAGCATCATCCATTAAT  845

seq1  TTAGTTTAATTACTTGTGCTAATCAAAGGAGAAACTTAAGAGAAAAAAAT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAATTACTTGTGCTAATCAAAGGAGAAACTTAAGAGAAAAAAAT  895

seq1  CAGACACTTGGAAATGTTTTTTTATTTGTAGTCCTAAAGAGAAGCATCCA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTTGGAAATGTTTTTTTATTTGTAGTCCTAAAGAGAAGCATCCA  945

seq1  AATACACTATTTTTGTATAGTAATTTTTCTTCATTTTCTGGAAATATTTT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTATTTTTGTATAGTAATTTTTCTTCATTTTCTGGAAATATTTT  995

seq1  AAATTTATAAAAGTAATATTTTTCTATGGTAGTTACTTTCTATTTTGTTG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAAAAGTAATATTTTTCTATGGTAGTTACTTTCTATTTTGTTG  1045

seq1  TTTCAGAATACCTTACAAAAACAATTTAAGGAATGTGTTACTTTATTTTA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAATACCTTACAAAAACAATTTAAGGAATGTGTTACTTTATTTTA  1095

seq1  TATGTCAATTATATAGGACACCAAGACAGAGCAAGGCACAGAACCTGTTA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAATTATATAGGACACCAAGACAGAGCAAGGCACAGAACCTGTTA  1145

seq1  TACAATCAGGAGGTAGAGAATGCTGAATTCTAGTGCTGAATTC  1170
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCAGGAGGTAGAGAATGCTGAATTCTAGTGCTGAATTC  1188


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