BAC Information

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BAC

Clone NameB6Ng01-211N08
ChromosomeX (Build37)
Map Location 116,838,712 - 116,839,799
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211N08.bB6Ng01-211N08.g
ACCGA029786GA029787
length1,0751,179
definitionB6Ng01-211N08.b B6Ng01-211N08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaagtatgcttgtgatataatccatctggttggaataagttt
gtttatgggttgagcatactggtataatagttattgccttcgtatttttt
tctttaaaaaaaaacaagcctgtttatagagttcaatgatagttcacttg
cctaccatatataagaatatggttttgattctgaataattccataaaatg
aaataaaactaaataaaataattaacagcatcttcttaatgttgtcaaca
tttctgagtccttgaagaaaaacagaatcatgagtaaaggaacacatttc
ttcagataggattattataaaactcttccataggaacattttatccaatt
caaaggaaacaatatgcatataatatctctgtttcaaaattttatttata
cagtgagataaaatacctcttcagttatgtgccttcttatattttatcta
gaattttatataaacactaatatgctgtttaatttctaagtctgtattaa
attaatataaatgttgcaataattaaggaatctggaagaataagcaaacc
tcagtgatagtgtgcctaaaggttttattacattaaactctttggtaatt
gattcctttcctcttttcactctttgtaaataaatgcttttgtctttata
cttaatatatacctgaaatttcaactgatgtctgttgctgaataaacata
gcatcaatatcagtgtcatttatatctagactacatctgtggtttcctaa
ttttctttgttttgaaatttagtacttttataatcaagaataaaatattt
cctttgaaatctaaacaaactatggccattctttaccaaaattacctatt
ttaaatccaattatttattataaaagtttaagatacaaagttattaaata
tgaaaatattcttaagttattaaatgccagcaattgcatcttgcataata
gggaggaaatattctagccaaaattttagccttttaaatattattttgac
agcagtcgcttctcctgagagagagaaaaaatgagcagttggcacaactg
cagtgcattgaggggagatatcatt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagataaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgttgagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatcctggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctaggagaaagtatccaagagctaaaggatcttcaacctat
agtgaaaacattatgactaaccagtacccctgagctctgactctagctgc
atatgtatcaaaagatgcttagtccgcattcacttgaaagaaagtccatg
aacacgcgacctttgtatgcccgtaaggaatgccaggcaagggggcagtg
atctgttagtacattgagtcacatggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116838712_116839799
seq2: B6Ng01-211N08.b_47_1121 (reverse)

seq1  AATGATATCTCCCCCTCATTGGCCACCTGCAGTTTGTGCCAACTGCCTCA  50
      |||||||||| ||||||| ||  || |||||| |||||||||||| ||||
seq2  AATGATATCT-CCCCTCAATG--CA-CTGCAG-TTGTGCCAACTG-CTCA  44

seq1  TTTTTTTTCTCCTCCTTCTCAGGAGAAGCGACCTGCTGTCAAAATAATAT  100
      |||||| ||||     ||||||||||||||| ||||||||||||||||||
seq2  TTTTTTCTCTC-----TCTCAGGAGAAGCGA-CTGCTGTCAAAATAATAT  88

seq1  TTAAAAGGCTAAAATTTTGGCTAGAATATTTCCTCCCTATTTATGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTAAAAGGCTAAAATTTTGGCTAGAATATTTCCTCCCTA-TTATGCAAGA  137

seq1  TGCAATTGCTGGCATTTAATAACTTAAGAATATTTTCATATTTAATAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGCTGGCATTTAATAACTTAAGAATATTTTCATATTTAATAACT  187

seq1  TTGTATCTTAAACTTTTATAATAAATAATTGGATTTAAAATAGGTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTTAAACTTTTATAATAAATAATTGGATTTAAAATAGGTAATTT  237

seq1  TGGTAAAGAATGGCCATAGTTTGTTTAGATTTCAAAGGAAATATTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGAATGGCCATAGTTTGTTTAGATTTCAAAGGAAATATTTTATT  287

seq1  CTTGATTATAAAAGTACTAAATTTCAAAACAAAGAAAATTAGGAAACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTATAAAAGTACTAAATTTCAAAACAAAGAAAATTAGGAAACCAC  337

seq1  AGATGTAGTCTAGATATAAATGACACTGATATTGATGCTATGTTTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGTCTAGATATAAATGACACTGATATTGATGCTATGTTTATTCA  387

seq1  GCAACAGACATCAGTTGAAATTTCAGGTATATATTAAGTATAAAGACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGACATCAGTTGAAATTTCAGGTATATATTAAGTATAAAGACAAA  437

seq1  AGCATTTATTTACAAAGAGTGAAAAGAGGAAAGGAATCAATTACCAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATTTACAAAGAGTGAAAAGAGGAAAGGAATCAATTACCAAAGA  487

seq1  GTTTAATGTAATAAAACCTTTAGGCACACTATCACTGAGGTTTGCTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGTAATAAAACCTTTAGGCACACTATCACTGAGGTTTGCTTATT  537

seq1  CTTCCAGATTCCTTAATTATTGCAACATTTATATTAATTTAATACAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATTCCTTAATTATTGCAACATTTATATTAATTTAATACAGACT  587

seq1  TAGAAATTAAACAGCATATTAGTGTTTATATAAAATTCTAGATAAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAAACAGCATATTAGTGTTTATATAAAATTCTAGATAAAATAT  637

seq1  AAGAAGGCACATAACTGAAGAGGTATTTTATCTCACTGTATAAATAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCACATAACTGAAGAGGTATTTTATCTCACTGTATAAATAAAAT  687

seq1  TTTGAAACAGAGATATTATATGCATATTGTTTCCTTTGAATTGGATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAGAGATATTATATGCATATTGTTTCCTTTGAATTGGATAAAA  737

seq1  TGTTCCTATGGAAGAGTTTTATAATAATCCTATCTGAAGAAATGTGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTATGGAAGAGTTTTATAATAATCCTATCTGAAGAAATGTGTTCC  787

seq1  TTTACTCATGATTCTGTTTTTCTTCAAGGACTCAGAAATGTTGACAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCATGATTCTGTTTTTCTTCAAGGACTCAGAAATGTTGACAACAT  837

seq1  TAAGAAGATGCTGTTAATTATTTTATTTAGTTTTATTTCATTTTATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGATGCTGTTAATTATTTTATTTAGTTTTATTTCATTTTATGGAA  887

seq1  TTATTCAGAATCAAAACCATATTCTTATATATGGTAGGCAAGTGAACTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGAATCAAAACCATATTCTTATATATGGTAGGCAAGTGAACTAT  937

seq1  CATTGAACTCTATAAACAGGCTTGTTTTTTTTTAAAGAAAAAAATACGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACTCTATAAACAGGCTTGTTTTTTTTTAAAGAAAAAAATACGAA  987

seq1  GGCAATAACTATTATACCAGTATGCTCAACCCATAAACAAACTTATTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAACTATTATACCAGTATGCTCAACCCATAAACAAACTTATTCCA  1037

seq1  ACCAGATGGATTATATCACAAGCATACTTTGAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGGATTATATCACAAGCATACTTTGAGAATTC  1075


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