BAC Information

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BAC

Clone NameB6Ng01-215M09
ChromosomeX (Build37)
Map Location 17,329,015 - 17,462,347
singlet/doubletdoublet
Overlap geneEG436196
Upstream geneMaob, Ndph, LOC100043063, Efhc2, Fundc1, EG278181, EG668994
Downstream geneEG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098, EG628855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215M09.bB6Ng01-215M09.g
ACCGA032643GA032644
length1,2401,208
definitionB6Ng01-215M09.b B6Ng01-215M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,461,124 - 17,462,347)(17,329,015 - 17,330,227)
sequence
gaattcattagttctttgaagacaaagcaagactattgcttaaatgagtt
ccagaaagaaacgttctagtcttggtggccagcagtttgctgaaggagat
aactttgtgaaactgaagccatacgacaggcgggcccgaaaggcaagaag
tgtctcctcaccacgcaagtcaacagagtcgaggagtcttcaaccaactc
ttcaaagaagactgcgaggccgctctgtgaagaaacgccgtttggtggag
aatggttactctaaggagaaaacgtatacaggggagaaaattccttccac
tgagaaaaattcttccactgagaagcgttgttcccttgctgagaagtatc
acaccacagttaaaagttcctcggctgaaaagcttctgttagtggagaag
catccttatgctgataaaagccttactaggaagaagagatcctctgcaga
gaagcactctccaactgaaaaaggtcggatgacccagaaaagttcttctg
gggggaggcgccactctgagacgcaccaatctgggaagagtcctcacttt
tctgaggaatgccagattacagagaaacgtcattcatctgtgaagcatgg
gtcttcagacaaagaccatcctgcagatcgaggtcatcctatcaataaaa
gacgctcttcagaaaaacgtcagtccacagagaaaggtcagttgacaggg
agaagtccctatgctcctgccaatgagagagggcgccctaccaagaaagg
tcaacctacagagaaaggcctttctactaagaagggtcccgatactgaga
accgacaccctgcaaagaaaggctactcagccaagacacttagctctgca
gagagagatagccagatagagagaggcagtgctacaggtagcagactctc
tacagagaaagattgcctttcagggagaggttggcctgccaaaaaaagtc
atctggcagagaagggccattcagagaaaagtagctggtgctttaagaag
gaacttctgcaaggaaagatcgctctgcaggaagagtcacaagttaatta
caagaaggccctgcaagagaagggtccaccagtcaaatgtatctggtgaa
atcaagtgtaccaatctgcaaggtaaagaccaaactgccagaggtcgctt
cttaacaaaagccatcctagaagagaaggaagttcgcctgtttggaatga
gatctggttcgtcaacagaaccttcgtgaaggaaagggag
gaattccaagctcactgttggctttaaggattttctaggaaccattggaa
cactggtggaggcttaggtatatgtcaaaaaatcaatccttaaaggcact
tataataaaacaatactgaaagagagcacacggatccatacaccagacta
actcggggacagagtttgagtataccggctatgggaatgccaaggttcca
ggaggctgtttctgtgaaactctgcctcatgactgctttcaggctttagg
cctaccaagcagactgcactggagtggacgtagcaagagaaatcagcatt
cttctctcttctcacatttaatgtgatggtttaaaattaatccccacaaa
tgcattcccaagtttgtttggccctttctgtcaatgtggcaaacacacct
gaggtgatcaatgtaaaatgaggaacaagttctttctgctcacagtctca
gagttttcagttcatgggtggctggctccttactttcaagcctatgagga
ggcagaacatcaagcaaaagggtatggttgaggaaaggaggtcacctctt
ggcagtacaagagacaagagtctggagacaagatgaactagggactacct
ataccctccaaagaggcacctctagggacccacttcttccaactaagcct
cacctcctaatttctactattttgcagtaattcaattaatgaggccacca
tcaatgtattggttcatttcttagctcaaactccccaggacctaatcacc
tgtccttgattggatccaacacatggtaccccaaacactgtacccaaagc
ataccaaaaggaaaatcagaagcttgtttcaaaagccaatgacttgccaa
ttctatcatgtagatttcttaagtgattctcaggaattacatgtggtttc
tgcctggtctgactacattccatcaacatctgttccctgctacattctgc
agggcttggtcctggaaacttgactgggacagagaaagattgaagaaaga
acagagcatggtagttggctctgttcatatgctgctgtacagctaagcac
aaaaactcagcagttttcttatgtaacagcccaggagtgagtcttttcag
ttagaaacttgtctgtcagtccagtctcttattgtcagcagtttcaggtt
acagtcatctggaacgagagctgtccatggctctgattttttttatgcta
tttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_17461124_17462347
seq2: B6Ng01-215M09.b_45_1284 (reverse)

seq1  CTCCCTCTTCCTTCA-GAAGGTCCTGTTGACGAA-CAGATCTCATTCTCA  48
      |||||| |||||||| |||||| ||||||||||| ||||||||||||  |
seq2  CTCCCT-TTCCTTCACGAAGGTTCTGTTGACGAACCAGATCTCATTCCAA  49

seq1  ACAGGGCGACT--CTCCTC-TCTAGGGATGCTTTTGTTA--GAGCGACTT  93
      |||||   |||  || ||| ||||||   ||||||||||   |||||| |
seq2  ACAGGCGAACTTCCTTCTCTTCTAGGATGGCTTTTGTTAAGAAGCGACCT  99

seq1  CTTGCAGGTTGGTCTTT-CCCTGCAGA-TGGTACACTTGA-TTCA-CAGA  139
      || |||| ||||||||| || |||||| |||||||||||| |||| ||||
seq2  CTGGCAGTTTGGTCTTTACCTTGCAGATTGGTACACTTGATTTCACCAGA  149

seq1  TACATTTGACTGGGTGACCCTCCTC-TGCAGGGCC-TCTTGT-ATTA--C  184
      |||||||||||||  |||||| ||| ||||||||| |||||| ||||   
seq2  TACATTTGACTGGTGGACCCTTCTCTTGCAGGGCCTTCTTGTAATTAACT  199

seq1  TGTGAACTCTTCCTGCAGAGCGATCTTTCCCTGCAGAAGTTCC-TCTTAA  233
      |||| ||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TGTG-ACTCTTCCTGCAGAGCGATCTTTCCTTGCAGAAGTTCCTTCTTAA  248

seq1  AGCA-CAGCTACTTTTCTCTGAATGGCCCTTCTCTGCCAGATGACTTTTT  282
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCTACTTTTCTCTGAATGGCCCTTCTCTGCCAGATGACTTTTT  298

seq1  TTGGCAGGCCAACCTCTCCCTGAAAGGCAATCTTTCTCTGTAGAGAGTCT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGCCAACCTCTCCCTGAAAGGCAATCTTTCTCTGTAGAGAGTCT  348

seq1  GCTACCTGTAGCACTGCCTCTCTCTATCTGGCTATCTCTCTCTGCAGAGC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTGTAGCACTGCCTCTCTCTATCTGGCTATCTCTCTCTGCAGAGC  398

seq1  TAAGTGTCTTGGCTGAGTAGCCTTTCTTTGCAGGGTGTCGGTTCTCAGTA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCTTGGCTGAGTAGCCTTTCTTTGCAGGGTGTCGGTTCTCAGTA  448

seq1  TCGGGACCCTTCTTAGTAGAAAGGCCTTTCTCTGTAGGTTGACCTTTCTT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGACCCTTCTTAGTAGAAAGGCCTTTCTCTGTAGGTTGACCTTTCTT  498

seq1  GGTAGGGCGCCCTCTCTCATTGGCAGGAGCATAGGGACTTCTCCCTGTCA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGCGCCCTCTCTCATTGGCAGGAGCATAGGGACTTCTCCCTGTCA  548

seq1  ACTGACCTTTCTCTGTGGACTGACGTTTTTCTGAAGAGCGTCTTTTATTG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTTTCTCTGTGGACTGACGTTTTTCTGAAGAGCGTCTTTTATTG  598

seq1  ATAGGATGACCTCGATCTGCAGGATGGTCTTTGTCTGAAGACCCATGCTT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGACCTCGATCTGCAGGATGGTCTTTGTCTGAAGACCCATGCTT  648

seq1  CACAGATGAATGACGTTTCTCTGTAATCTGGCATTCCTCAGAAAAGTGAG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGAATGACGTTTCTCTGTAATCTGGCATTCCTCAGAAAAGTGAG  698

seq1  GACTCTTCCCAGATTGGTGCGTCTCAGAGTGGCGCCTCCCCCCAGAAGAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCCCAGATTGGTGCGTCTCAGAGTGGCGCCTCCCCCCAGAAGAA  748

seq1  CTTTTCTGGGTCATCCGACCTTTTTCAGTTGGAGAGTGCTTCTCTGCAGA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGGTCATCCGACCTTTTTCAGTTGGAGAGTGCTTCTCTGCAGA  798

seq1  GGATCTCTTCTTCCTAGTAAGGCTTTTATCAGCATAAGGATGCTTCTCCA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTTCTTCCTAGTAAGGCTTTTATCAGCATAAGGATGCTTCTCCA  848

seq1  CTAACAGAAGCTTTTCAGCCGAGGAACTTTTAACTGTGGTGTGATACTTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAAGCTTTTCAGCCGAGGAACTTTTAACTGTGGTGTGATACTTC  898

seq1  TCAGCAAGGGAACAACGCTTCTCAGTGGAAGAATTTTTCTCAGTGGAAGG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGGGAACAACGCTTCTCAGTGGAAGAATTTTTCTCAGTGGAAGG  948

seq1  AATTTTCTCCCCTGTATACGTTTTCTCCTTAGAGTAACCATTCTCCACCA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCCCCTGTATACGTTTTCTCCTTAGAGTAACCATTCTCCACCA  998

seq1  AACGGCGTTTCTTCACAGAGCGGCCTCGCAGTCTTCTTTGAAGAGTTGGT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCGTTTCTTCACAGAGCGGCCTCGCAGTCTTCTTTGAAGAGTTGGT  1048

seq1  TGAAGACTCCTCGACTCTGTTGACTTGCGTGGTGAGGAGACACTTCTTGC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCCTCGACTCTGTTGACTTGCGTGGTGAGGAGACACTTCTTGC  1098

seq1  CTTTCGGGCCCGCCTGTCGTATGGCTTCAGTTTCACAAAGTTATCTCCTT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGGGCCCGCCTGTCGTATGGCTTCAGTTTCACAAAGTTATCTCCTT  1148

seq1  CAGCAAACTGCTGGCCACCAAGACTAGAACGTTTCTTTCTGGAACTCATT  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACTGCTGGCCACCAAGACTAGAACGTTTCTTTCTGGAACTCATT  1198

seq1  TAAGCAATAGTCTTGCTTTGTCTTCAAAGAACTAATGAATTC  1224
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATAGTCTTGCTTTGTCTTCAAAGAACTAATGAATTC  1240

seq1: chrX_17329015_17330227
seq2: B6Ng01-215M09.g_67_1274

seq1  GAATTCCAAGCTCACTGTTGGCTTTAAGGATTTTCTAGGAACCATTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCACTGTTGGCTTTAAGGATTTTCTAGGAACCATTGGAA  50

seq1  CACTGGTGGAGGCTTAGGTATATGTCAAAAAATCAATCCTTAAAGGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGGAGGCTTAGGTATATGTCAAAAAATCAATCCTTAAAGGCACT  100

seq1  TATAATAAAACAATACTGAAAGAGAGCACACGGATCCATACACCAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAACAATACTGAAAGAGAGCACACGGATCCATACACCAGACTA  150

seq1  ACTCGGGGACAGAGTTTGAGTATACCGGCTATGGGAATGCCAAGGTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGGACAGAGTTTGAGTATACCGGCTATGGGAATGCCAAGGTTCCA  200

seq1  GGAGGCTGTTTCTGTGAAACTCTGCCTCATGACTGCTTTCAGGCTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGTTTCTGTGAAACTCTGCCTCATGACTGCTTTCAGGCTTTAGG  250

seq1  CCTACCAAGCAGACTGCACTGGAGTGGACGTAGCAAGAGAAATCAGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAAGCAGACTGCACTGGAGTGGACGTAGCAAGAGAAATCAGCATT  300

seq1  CTTCTCTCTTCTCACATTTAATGTGATGGTTTAAAATTAATCCCCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTTCTCACATTTAATGTGATGGTTTAAAATTAATCCCCACAAA  350

seq1  TGCATTCCCAAGTTTGTTTGGCCCTTTCTGTCAATGTGGCAAACACACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCCAAGTTTGTTTGGCCCTTTCTGTCAATGTGGCAAACACACCT  400

seq1  GAGGTGATCAATGTAAAATGAGGAACAAGTTCTTTCTGCTCACAGTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATCAATGTAAAATGAGGAACAAGTTCTTTCTGCTCACAGTCTCA  450

seq1  GAGTTTTCAGTTCATGGGTGGCTGGCTCCTTACTTTCAAGCCTATGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCAGTTCATGGGTGGCTGGCTCCTTACTTTCAAGCCTATGAGGA  500

seq1  GGCAGAACATCAAGCAAAAGGGTATGGTTGAGGAAAGGAGGTCACCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACATCAAGCAAAAGGGTATGGTTGAGGAAAGGAGGTCACCTCTT  550

seq1  GGCAGTACAAGAGACAAGAGTCTGGAGACAAGATGAACTAGGGACTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTACAAGAGACAAGAGTCTGGAGACAAGATGAACTAGGGACTACCT  600

seq1  ATACCCTCCAAAGAGGCACCTCTAGGGACCCACTTCTTCCAACTAAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCCAAAGAGGCACCTCTAGGGACCCACTTCTTCCAACTAAGCCT  650

seq1  CACCTCCTAATTTCTACTATTTTGCAGTAATTCAATTAATGAGGCCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTAATTTCTACTATTTTGCAGTAATTCAATTAATGAGGCCACCA  700

seq1  TCAATGTATTGGTTCATTTCTTAGCTCAAACTCCCCAGGACCTAATCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTATTGGTTCATTTCTTAGCTCAAACTCCCCAGGACCTAATCACC  750

seq1  TGTCCTTGATTGGATCCAACACATGGTACCCCAAACACTGTACCCAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGATTGGATCCAACACATGGTACCCCAAACACTGTACCCAAAGC  800

seq1  ATACCAAAAGGAAAATCAGAAGCTTGTTTCAAAAGCCAATGACTTGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAAGGAAAATCAGAAGCTTGTTTCAAAAGCCAATGACTTGCCAA  850

seq1  TTCTATCATGTAGATTTCTTAAGTGATTCTCAGGAATTACATGTGGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCATGTAGATTTCTTAAGTGATTCTCAGGAATTACATGTGGTTTC  900

seq1  TGCCTGGTCTGACTACAATCCATCAACATCTGTTCCCTGCTACATTCTGC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCCTGGTCTGACTACATTCCATCAACATCTGTTCCCTGCTACATTCTGC  950

seq1  AGGGCTTGGTCCTGGAAACTTGACTGGGACAGAGAAAGAATGAAGAAAGA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGGCTTGGTCCTGGAAACTTGACTGGGACAGAGAAAGATTGAAGAAAGA  1000

seq1  ACAGAAGCATGGTAGGTGGGCTCTGTTCATTATGCTGCTGTACCAGCTAA  1050
      |||| ||||||||| || ||||||||||| |||||||||||| |||||||
seq2  ACAG-AGCATGGTA-GTTGGCTCTGTTCA-TATGCTGCTGTA-CAGCTAA  1046

seq1  GCAACAAAAACCTCAGCAGTTTTCTTATGT-ACAGCCCAGGAGGAGAAGT  1099
      || ||||||| ||||||||||||||||||| ||||||||||||    |||
seq2  GC-ACAAAAA-CTCAGCAGTTTTCTTATGTAACAGCCCAGGAG--TGAGT  1092

seq1  C-TTTCAGTAGGAGACCTG-CTGTCAGTCTCAGGTCTC-TATGGCCAGCA  1146
      | |||||||  || || || ||||||||| || ||||| ||| | |||||
seq2  CTTTTCAGTTAGAAACTTGTCTGTCAGTC-CA-GTCTCTTATTGTCAGCA  1140

seq1  GTTTCAGGTTACAGTCATCTGGACCGAGGAAGCTG-CAGTTGCTC--GTT  1193
      ||||||||||||||||||||||| ||||  ||||| |  | ||||   ||
seq2  GTTTCAGGTTACAGTCATCTGGAACGAG--AGCTGTCCATGGCTCTGATT  1188

seq1  TTTTTTTTTTTGTTTTTTTT  1213
      |||||| |  | ||||||||
seq2  TTTTTTATGCTATTTTTTTT  1208