BAC Information

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BAC

Clone NameB6Ng01-215O17
ChromosomeX (Build37)
Map Location 80,805,545 - 80,956,811
singlet/doubletdoublet
Overlap geneDmd
Upstream geneTsga8
Downstream geneLOC100042306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215O17.bB6Ng01-215O17.g
ACCGA032747GA032748
length1,132929
definitionB6Ng01-215O17.b B6Ng01-215O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,955,690 - 80,956,811)(80,805,545 - 80,806,472)
sequence
gaattcatggagaactaactaattatatatcagttatactgattcacaat
aattgtatagctaactcattttttaaaacttaaaatttaaaacattattc
accatacagtgtttcaccctcaaaaatgtatgacagtatcacaaattatc
agattttgcttaaacatggcttttccttcaactcttgtgtgagttcccta
tggttgactattttgccctttcatcctagaaaggcttaggagtcattgta
aaatgatgtttagtcttgaattctataatttaaatatgtttagtaggaca
tcccatggcttaaatctctcttattctttgtaaatgctcaataaagtgac
ttatcataaatccaaagatagccaaagatagatttctccaacagtacatg
catatgtgtgtgtgtgtatgtacatatatatatatacatatatattgcag
aatttatagatttatcttttcattgatttaaaatattgaccttcattaaa
attcacatgttgcaactaagcagtgtgtagattatcagtccagtgtagaa
tctatccaaatcatttatttctgtcattgcttgaatgagtgtaaccaact
cattaggcaagcataaataattggaacaaacagaatgggcaggaagctaa
ataattttttgtgtatattctatttattttatttttctagtttataattt
ttctcttttttatttatactccagattttattcccctcgtggtccacgac
tgttccaaattccatacctttcttccagcctccctgtctccaagtggatg
tccccacccccaccccaccagacctccccactccctggggcttccaatct
atttagggataggtacatcatcttagaatgaacacagacccgacagtcct
ctgctgtatgtgttgggggcctcatatcagctgtgtagttgcctgtttgg
tgattcagtgctaaataattttttagtacaacctgcagagaattgaaact
tgtctcttagaggaaaataatatattgtttacctaagtattttctctgaa
ggttcccttgaagtttaagaatattccttgagttttaagaaattgatgca
tacatcctttggtggtagaataaacaaatgcc

gaattctttctgtaaataaatagaggaagatcctatgttcatacatatga
aaacagtatagttaggttttttcccaaacttacagtaatgttcaatgtat
tctctacaataagcacaatgttgtattatgcagtcataggaaaattcacc
agaaaattctgtgtaatttcatggagctcagagaaacctaaaaacttgat
tacaaatagtgtagtacttaatacgtattcatcagtacatcatcaaagct
caagaataaacaacagcatatatggtaaaatatttttggtaagtttattc
aatgaagataaagcaggcttttcaacagatggtacagagaaaatgctctt
tgtaccactaataacagttgggtctttggcacataagcaatatttaagag
aagtacataactttaaacttattagactaaaccatctaacataggtgtca
aaagttctgatactctttaactcttaaatttattagatataaatataaaa
tttaaataaaactaaatccaaacttaaaatttttgcacatcatgtacaga
agggataaagaagcttacagaattgcagaaaatacttacatatcagtttc
ttgacaagggacttatacctgaaaatcagttttataattcaccaacacca
ttgtcatcaccatcaagagcaacaataaaaaataactgaaataaaaatca
gcaaagattttaaacagaaatttctataaagaaaataaagatatacaagt
gttcaacaagaacaggaagcttggctcatcagcattaatatttaaggaaa
cacaaatccatctggagtaaaaagcatttaacacctattgggcttttttc
tcttacgaaacaaacagaaaggaaggaaggaaggaagaatgaaagaaaaa
aaggaaggaagggagggagagatggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_80955690_80956811
seq2: B6Ng01-215O17.b_40_1171 (reverse)

seq1  GGCA-TTGTTTA-TCTACCACCAAA-GATGTATGCATC-ATTTCTAAAAC  46
      |||| ||||||| |||||||||||| |||||||||||| |||||| ||| 
seq2  GGCATTTGTTTATTCTACCACCAAAGGATGTATGCATCAATTTCTTAAAA  50

seq1  TTCAAGGGATA-TCTAAAACTTCAAGGGAACC-TCAGAG-AAATAC-TAA  92
       |||||| ||| ||| |||||||||||||||| |||||| |||||| || 
seq2  CTCAAGGAATATTCTTAAACTTCAAGGGAACCTTCAGAGAAAATACTTAG  100

seq1  GTAAAC-ATATATTATTTTCCTCT-AGAGAC-AGTTTCAATTCTCTTGCA  139
      |||||| ||||||||||||||||| |||||| ||||||||||||| ||||
seq2  GTAAACAATATATTATTTTCCTCTAAGAGACAAGTTTCAATTCTC-TGCA  149

seq1  GTTGTTACTAAAAAATTATTTAGCACTGAATCACCAAACAGGCAACTTAC  189
      | |  ||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTTGTACTAAAAAATTATTTAGCACTGAATCACCAAACAGGCAAC-TAC  198

seq1  ACAGCTGATATGAGGCCCCCAACACATACAGCAGAGGACTGTCGGGTCTG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGATATGAGGCCCCCAACACATACAGCAGAGGACTGTCGGGTCTG  248

seq1  TGTTCATTCTAAGATGATGTACCTATCCCTAAATAGATTGGAAGCCCCAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTCTAAGATGATGTACCTATCCCTAAATAGATTGGAAGCCCCAG  298

seq1  GGAGTGGGGAGGTCTGGTGGGGTGGGGGTGGGGACATCCACTTGGAGACA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGGAGGTCTGGTGGGGTGGGGGTGGGGACATCCACTTGGAGACA  348

seq1  GGGAGGCTGGAAG-AAGGTATGGAATTTGGAACAGTCGTGGACCACGAGG  388
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTGGAAGAAAGGTATGGAATTTGGAACAGTCGTGGACCACGAGG  398

seq1  GGAATAAAATCTGGAGTATAAATAAAAAAGAGAAAAATTATAAACTAGAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAATCTGGAGTATAAATAAAAAAGAGAAAAATTATAAACTAGAA  448

seq1  AAATAAAATAAATAGAATATACACAAAAAATTATTTAGCTTCCTGCCCAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAATAGAATATACACAAAAAATTATTTAGCTTCCTGCCCAT  498

seq1  TCTGTTTGTTCCAATTATTTATGCTTGCCTAATGAGTTGGTTACACTCAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGTTCCAATTATTTATGCTTGCCTAATGAGTTGGTTACACTCAT  548

seq1  TCAAGCAATGACAGAAATAAATGATTTGGATAGATTCTACACTGGACTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAATGACAGAAATAAATGATTTGGATAGATTCTACACTGGACTGA  598

seq1  TAATCTACACACTGCTTAGTTGCAACATGTGAATTTTAATGAAGGTCAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACACACTGCTTAGTTGCAACATGTGAATTTTAATGAAGGTCAAT  648

seq1  ATTTTAAATCAATGAAAAGATAAATCTATAAATTCTGCAATATATATGTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATCAATGAAAAGATAAATCTATAAATTCTGCAATATATATGTA  698

seq1  TATATATATATGTACATACACACACACACATATGCATGTACTGTTGGAGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGTACATACACACACACACATATGCATGTACTGTTGGAGA  748

seq1  AATCTATCTTTGGCTATCTTTGGATTTATGATAAGTCACTTTATTGAGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCTTTGGCTATCTTTGGATTTATGATAAGTCACTTTATTGAGCA  798

seq1  TTTACAAAGAATAAGAGAGATTTAAGCCATGGGATGTCCTACTAAACATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAGAATAAGAGAGATTTAAGCCATGGGATGTCCTACTAAACATA  848

seq1  TTTAAATTATAGAATTCAAGACTAAACATCATTTTACAATGACTCCTAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTATAGAATTCAAGACTAAACATCATTTTACAATGACTCCTAAG  898

seq1  CCTTTCTAGGATGAAAGGGCAAAATAGTCAACCATAGGGAACTCACACAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTAGGATGAAAGGGCAAAATAGTCAACCATAGGGAACTCACACAA  948

seq1  GAGTTGAAGGAAAAGCCATGTTTAAGCAAAATCTGATAATTTGTGATACT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAGGAAAAGCCATGTTTAAGCAAAATCTGATAATTTGTGATACT  998

seq1  GTCATACATTTTTGAGGGTGAAACACTGTATGGTGAATAATGTTTTAAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACATTTTTGAGGGTGAAACACTGTATGGTGAATAATGTTTTAAAT  1048

seq1  TTTAAGTTTTAAAAAATGAGTTAGCTATACAATTATTGTGAATCAGTATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTTTAAAAAATGAGTTAGCTATACAATTATTGTGAATCAGTATA  1098

seq1  ACTGATATATAATTAGTTAGTTCTCCATGAATTC  1122
      ||||||||||||||||||||||||||||||||||
seq2  ACTGATATATAATTAGTTAGTTCTCCATGAATTC  1132


seq1: chrX_80805545_80806472
seq2: B6Ng01-215O17.g_67_995

seq1  GAATTCTTTCTGTAAATAAATAGAGGAAGATCCTATGTTCATACATATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTAAATAAATAGAGGAAGATCCTATGTTCATACATATGA  50

seq1  AAACAGTATAGTTAGGTTTTTTCCCAAACTTACAGTAATGTTCAATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTATAGTTAGGTTTTTTCCCAAACTTACAGTAATGTTCAATGTAT  100

seq1  TCTCTACAATAAGCACAATGTTGTATTATGCAGTCATAGGAAAATTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAATAAGCACAATGTTGTATTATGCAGTCATAGGAAAATTCACC  150

seq1  AGAAAATTCTGTGTAATTTCATGGAGCTCAGAGAAACCTAAAAACTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCTGTGTAATTTCATGGAGCTCAGAGAAACCTAAAAACTTGAT  200

seq1  TACAAATAGTGTAGTACTTAATACGTATTCATCAGTACATCATCAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAGTGTAGTACTTAATACGTATTCATCAGTACATCATCAAAGCT  250

seq1  CAAGAATAAACAACAGCATATATGGTAAAATATTTTTGGTAAGTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATAAACAACAGCATATATGGTAAAATATTTTTGGTAAGTTTATTC  300

seq1  AATGAAGATAAAGCAGGCTTTTCAACAGATGGTACAGAGAAAATGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATAAAGCAGGCTTTTCAACAGATGGTACAGAGAAAATGCTCTT  350

seq1  TGTACCACTAATAACAGTTGGGTCTTTGGCACATAAGCAATATTTAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACTAATAACAGTTGGGTCTTTGGCACATAAGCAATATTTAAGAG  400

seq1  AAGTACATAACTTTAAACTTATTAGACTAAACCATCTAACATAGGTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATAACTTTAAACTTATTAGACTAAACCATCTAACATAGGTGTCA  450

seq1  AAAGTTCTGATACTCTTTAACTCTTAAATTTATTAGATATAAATATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTGATACTCTTTAACTCTTAAATTTATTAGATATAAATATAAAA  500

seq1  TTTAAATAAAACTAAATCCAAACTTAAAATTTTTGCACATCATGTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAACTAAATCCAAACTTAAAATTTTTGCACATCATGTACAGA  550

seq1  AGGGATAAAGAAGCTTACAGAATTGCAGAAAATACTTACATATCAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAAAGAAGCTTACAGAATTGCAGAAAATACTTACATATCAGTTTC  600

seq1  TTGACAAGGGACTTATACCTGAAAATCAGTTTTATAATTCACCAACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGGGACTTATACCTGAAAATCAGTTTTATAATTCACCAACACCA  650

seq1  TTGTCATCACCATCAAGAGCAACAATAAAAAATAACTGAAATAAAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCACCATCAAGAGCAACAATAAAAAATAACTGAAATAAAAATCA  700

seq1  GCAAAGATTTTAAACAGAAATTTCTATAAAGAAAAT-AAGATATACAAGT  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCAAAGATTTTAAACAGAAATTTCTATAAAGAAAATAAAGATATACAAGT  750

seq1  GTTCAACAAGAACAGGAAGCTTGGCTCATCAGCATTAATATTTAAGGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACAAGAACAGGAAGCTTGGCTCATCAGCATTAATATTTAAGGAAA  800

seq1  CACAAATCCATCTGGAGTAAAAAGCATTTAACACCTATTGGGCTTTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCCATCTGGAGTAAAAAGCATTTAACACCTATTGGGCTTTTTTC  850

seq1  TCTTACGAAACAAACAGAAAGGAAGGAAGGAAGGAAGAATGAAAGAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACGAAACAAACAGAAAGGAAGGAAGGAAGGAAGAATGAAAGAAAAA  900

seq1  AAGGAAGGAAGGGAGGGAGAGATGGAGGG  928
      |||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGGAGGGAGAGATGGAGGG  929


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