BAC Information

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BAC

Clone NameB6Ng01-217E09
ChromosomeX (Build37)X (Build37)
Map Location 27,218,148 - 27,219,26933,028,652 - 33,029,373
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC619991, LOC664844, LOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881
Downstream geneLOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898, LOC22526, EG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217E09.bB6Ng01-217E09.g
ACCGA033732GA033733
length1,1091,034
definitionB6Ng01-217E09.b B6Ng01-217E09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,218,148 - 27,219,269)(33,028,652 - 33,029,373)
sequence
gaattccaaggtaaatgctgatacacaatgccatattgaggtaagtgttg
ttatctgacactggatagaaaattgatgtctgagatcctacccaccacag
gaagttctgttgatgtccctgatgcattcatgtagctcctgatgtgaaac
atgtatggtattttcattattatgattctacgtgtaaaaaaaaaaaaaag
aaaactatgttgatgccagtgatgtatgctgtgaccagcaattttgatgg
agtccaagtttgattttattcctattgctaatggaaaccctagtggtggc
tatgatctgtgctactgcttgaaaatataatgaacctcaaggtccacaat
aatgcccaagtttattttgagggaagtattcttatctggttctggagatc
agattaaaatctggaaacctacctgcaacaggatcatcagttggtatttc
tcatgtatgagtgtagctcacaatatctaacatgtgataaatattgatac
ttgtgatcctgctggaaacatgaagttattttgaaatcagtgatgccgct
atgaccagcaaccatgatggggtattttattcctgttgctaattgagacc
ctggtgatggctatgatctgtgttgtttcttgagaacctgatgaattcaa
aggcccgtagtgaaacgataggttatattgaggtaagtgttctcagtaat
ggagatcagattgatatctaagatcctaacagccactacaaattctgatg
atgtcactgatacatgaatacattgcatgatgttgactaagtaatgtgca
aaatccttactgccacatgaaataatgtgaatatcagtgatttatcctgc
aactaaatgaacaattatgacaatgatttattctgctctgtgaattgagg
ttgatgtcattgatatataactgtcttcacaccccatggattgccctagg
tccatgctaccattcgcacctggtgccagtgatccctgctgtccctggta
ctatgtaatatcactattactagtcctgtagaaactatggtgatatcatc
atcattctggctcagtaagccatgttgatcccacagtccatgatgcttct
gggattatt
gaattcctgggacatctcccagggtggcagccagttatcccctgacatgt
catcccttccatcctggacaaggagttcattgctctcacgagctctgaag
actgcaaactgaaaccgaaagtaccaaattcaaacacagccagcattgaa
agacatagacaaaaacagaatcttacctccaagaggggtctttgagaaat
gggatggccacaaaatcccatgatgatccctcaactgaaagacccccatt
tcggggaaaccctcgctcaagtcctgggatgagccggtaccccaataacg
caagagaaaccattcttgatgcaatattgcatgaggtttattcaggatgc
tgaggccaagctagtaacacacacaggggcagaggagatcgacccccagc
agttgcagttgagggttttaaagaataaaccacaaagtgaggggaggata
agatcaaaaagaatggggaagccaagtaaacataagaatggggatgggga
attagagctcatcgctcatggaaaggttacaggctatctttggcaaacat
tcttggtccgttaaagaatggggaagctgagtaaacatcataagaatggg
gatggtgaattagagctcatctctcctggaaaggttacaggctatctttt
tgcaaacactcttggtcccttacgctatgggtcaggtgcctgggtgggtt
acccagtgctcatctttctctcaggctgaaggcaaaagaacaaagaactc
catgatgggcttccctttctaggggtctaagaaacacattgagttggggt
cttacacctatccctggatggttagatatagttgtttttacaagtatgct
atcaagtatgctatgggtgcaatgaaggtcccagtagataacctaaaact
ccaagggcaaacccctcctttttcagtaatgttagaggaaaaaagatgag
tcaggtcagtgagatgtaaagctagaagcttaagagagcttgttggagcc
tttgaaatggcttggtaattaggtttggaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27218148_27219269
seq2: B6Ng01-217E09.b_46_1154 (reverse)

seq1  AATAATCCAAGAAGCATCATGGACTGTGGGTTTAAACATGGCTACTTGAG  50
      |||||||| |||||||||||||||||||||  | |||||||||   ||||
seq2  AATAATCCCAGAAGCATCATGGACTGTGGG-ATCAACATGGCTTACTGAG  49

seq1  GCAGAATGGATGATTGATATCACCATAGTTTCTACAGGAACTATGTAATA  100
       |||||| ||||| |||||||||||||||||||||||| |||| ||||||
seq2  CCAGAAT-GATGA-TGATATCACCATAGTTTCTACAGG-ACTA-GTAATA  95

seq1  GTGATATTAACATAGTAACCAGGGACAGCAGGGATCACTGGCAACCAGGT  150
      |||||||| ||||||| ||||||||||||||||||||||||| |||||| 
seq2  GTGATATT-ACATAGT-ACCAGGGACAGCAGGGATCACTGGC-ACCAGG-  141

seq1  TGCGAATAGTAGCATGGACCTAGGGCAATCCAATGGGGTGTGAAGACAGT  200
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCGAATGGTAGCATGGACCTAGGGCAATCC-ATGGGGTGTGAAGACAGT  190

seq1  TATATATCAATGACATCAACCTCAATTCACAGAGCAGAATAAATCATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCAATGACATCAACCTCAATTCACAGAGCAGAATAAATCATTGT  240

seq1  CATAATTGTTTCATTTAGTTGCAGGATAAATCACTGATATTCACATTATT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTG-TTCATTTAGTTGCAGGATAAATCACTGATATTCACATTATT  289

seq1  TCATGTGGCAGTAAGGATCTTGCACATTACTTAGTCAACATCATGCAATG  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATGTGGCAGTAAGGATTTTGCACATTACTTAGTCAACATCATGCAATG  339

seq1  TATTCATGTATCAGTGACATCATCAGAATTTGTAGTGGCTGTTAGGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGTATCAGTGACATCATCAGAATTTGTAGTGGCTGTTAGGATCT  389

seq1  TAGATATCAATCTGATCTCCATTACTGAGAACACTTACCTCAATATAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATCAATCTGATCTCCATTACTGAGAACACTTACCTCAATATAACC  439

seq1  TATCGTTTCACTACGGGCCTTTGAATTCATCAGGTTCTCAAGAAACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTTTCACTACGGGCCTTTGAATTCATCAGGTTCTCAAGAAACAACA  489

seq1  CAGATCATAGCCATCACCAGGGTCTCAATTAGCAACAGGAATAAAATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATAGCCATCACCAGGGTCTCAATTAGCAACAGGAATAAAATACC  539

seq1  CCATCATGGTTGCTGGTCATAGCGGCATCACTGATTTCAAAATAACTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGGTTGCTGGTCATAGCGGCATCACTGATTTCAAAATAACTTCA  589

seq1  TGTTTCCAGCAGGATCACAAGTATCAATATTTATCACATGTTAGATATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAGCAGGATCACAAGTATCAATATTTATCACATGTTAGATATTG  639

seq1  TGAGCTACACTCATACATGAGAAATACCAACTGATGATCCTGTTGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACACTCATACATGAGAAATACCAACTGATGATCCTGTTGCAGGT  689

seq1  AGGTTTCCACATTTTAATCTGATCTCCAGAACCAGATAAGAATACTTCCC  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCAGATTTTAATCTGATCTCCAGAACCAGATAAGAATACTTCCC  739

seq1  TCAAAATAAACTTGGGCATTATTGTGGACCTTGAGGTTCATTATATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAACTTGGGCATTATTGTGGACCTTGAGGTTCATTATATTTTC  789

seq1  AAGCAGTAGCACAGATCATAGCCACCACTAGGGTTTCCATTAGCAATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGCACAGATCATAGCCACCACTAGGGTTTCCATTAGCAATAGG  839

seq1  AATAAAATCAAACTTGGACTCCATCAAAATTGCTGGTCACAGCATACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCAAACTTGGACTCCATCAAAATTGCTGGTCACAGCATACATC  889

seq1  ACTGGCATCAACATAGTTTTCTTTTTTTTTTTTTTTTACACGTAGAATCA  950
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  ACTGGCATCAACATAGTTTTC--TTTTTTTTTTTTTTACACGTAGAATCA  937

seq1  TAATAATGAAAATACCATACATGTTTCACATCAGGAGCTACATGAATGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGAAAATACCATACATGTTTCACATCAGGAGCTACATGAATGCA  987

seq1  TCAGGGACATCAACAGAACTTCCTGTGGTGGGTAGGATCTCAGACATCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACATCAACAGAACTTCCTGTGGTGGGTAGGATCTCAGACATCAA  1037

seq1  TTTTCTATCCAGTGTCAGATAACAACACTTACCTCAATATGGCATTGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCCAGTGTCAGATAACAACACTTACCTCAATATGGCATTGTGT  1087

seq1  ATCAGCATTTACCTTGGAATTC  1122
      ||||||||||||||||||||||
seq2  ATCAGCATTTACCTTGGAATTC  1109

seq1: chrX_33028652_33029373
seq2: B6Ng01-217E09.g_377_1100

seq1  CATTCTTGATGCAATATTGCATGAGGTTTATTCGGGATGCTGAGGCCAAG  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTCTTGATGCAATATTGCATGAGGTTTATTCAGGATGCTGAGGCCAAG  50

seq1  CTAGTAACACACAGAGGGGCAGAGGAGATCGACCCCAGGCAGTTACAGTT  100
      ||||||||||||| ||||||||||||||||||||||  |||||| |||||
seq2  CTAGTAACACACACAGGGGCAGAGGAGATCGACCCCCAGCAGTTGCAGTT  100

seq1  GAGGGTTTTAAAGAATAAACCACAAAGTGAGGGGAGGATAAGACCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  GAGGGTTTTAAAGAATAAACCACAAAGTGAGGGGAGGATAAGATCAAAAA  150

seq1  GAATGGGGAAGCCAAGTAAACATAAGAATGGGGATGGGGAATTAGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGAAGCCAAGTAAACATAAGAATGGGGATGGGGAATTAGAGCTC  200

seq1  ATAGCTCATGGAAACGTTACAGGCTATCTTTGGCAAACATTCTTGGTCCC  250
      || ||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  ATCGCTCATGGAAAGGTTACAGGCTATCTTTGGCAAACATTCTTGGTCCG  250

seq1  TTAAAGAATGGGGAAGCTGAGTAAACATCATAAGAATGGGGATGGTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAATGGGGAAGCTGAGTAAACATCATAAGAATGGGGATGGTGAAT  300

seq1  TACAGCTCATCTCTCATGGAAAGGTTACAGGCTATCTTTTTGCAAACACT  350
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCATCTCTCCTGGAAAGGTTACAGGCTATCTTTTTGCAAACACT  350

seq1  CTTGGTCCCTTACGCTATGGGTCAGGTGCCTGGGTGGGTTACCCAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCCTTACGCTATGGGTCAGGTGCCTGGGTGGGTTACCCAGTGCT  400

seq1  CATCTTTCTCTCAGGCTGAAGGCAAAAGAACAAAGAACTCCATGATGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTCTCAGGCTGAAGGCAAAAGAACAAAGAACTCCATGATGGGC  450

seq1  TT-CGTTTCTAGGGTTCTAAGAAACACATTGAGTTGGGGTCTTACACCTA  499
      || | ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCTAGGGGTCTAAGAAACACATTGAGTTGGGGTCTTACACCTA  500

seq1  TCCCTGGATGGTTAGATATAGTTGTTTTTACAAGTATGCTATCAAGTATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGATGGTTAGATATAGTTGTTTTTACAAGTATGCTATCAAGTATG  550

seq1  CTATGGGTGCAAAAGAAGGTCCCAGTAGATATCCTAAAACTCCAAGGGCA  599
      |||||||||| || ||||||||||||||||| ||||||||||||||||||
seq2  CTATGGGTGC-AATGAAGGTCCCAGTAGATAACCTAAAACTCCAAGGGCA  599

seq1  AACCCCT-CTTTTTCAGTAATG-TAGAGGAAAAAAGGATGAGTCAGGTCA  647
      ||||||| |||||||||||||| |||||||||||| ||||||||||||||
seq2  AACCCCTCCTTTTTCAGTAATGTTAGAGGAAAAAA-GATGAGTCAGGTCA  648

seq1  GTGAGATGTAAAGCTAGAGCCTTAAGGAGAGCCTGTTGGAGCCTTTGAAA  697
      ||||||||||||||||||  ||||| |||||| |||||||||||||||||
seq2  GTGAGATGTAAAGCTAGAAGCTTAA-GAGAGCTTGTTGGAGCCTTTGAAA  697

seq1  GGGCTTGGTAA-TAGGTTT-GAGGAGA  722
       |||||||||| ||||||| |||||||
seq2  TGGCTTGGTAATTAGGTTTGGAGGAGA  724