BAC Information

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BAC

Clone NameB6Ng01-218E08
ChromosomeX (Build37)
Map Location 40,017,631 - 40,169,022
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218E08.bB6Ng01-218E08.g
ACCGA034443GA034444
length1,1621,149
definitionB6Ng01-218E08.b B6Ng01-218E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,167,850 - 40,169,022)(40,017,631 - 40,018,806)
sequence
gaattctacttggtctgtataggcactggagttcctatgatatcttaaaa
atatttttatataatcatataatgatcaaattatcattatatgtaagcac
aaatgcagatgctctatagacccagacacagttaacagtgagtgatatct
atcacatctacagtttgccatgaaaatcatgtaattagaaaatgaatgaa
aatcattcattagactctgctgatttaaatatcataagcagatgaaacag
gggcttaccataaattagccttttacttggtctctaagaaaatatgtaaa
acagccaaaataacagaagaatgctcaccatattaaatggcataggcttt
acaagtgcaatatgagaatagtctaactcttatatagcataggaagaacc
tataagctgaaacaagctatggacagtttatttacagacatgatgttgtc
gttgtttttattgactgacttagttgccagtttttcaaaatagagaaggg
tcacattgaaaattcctacttctaacttctcttgaacactagactgtctg
ggcctgcatcagctagagccaagatccttttaaatcgaatacatggtttc
acagtttgctccccatcagcaatatcataacaaataccccatttccttca
cacctgcattctctagcctgttgatttcattcttccaatttcagtatgac
tttcatgatgtaaacatatttataacaagcatttctagtccaggaagaaa
gaagttaataataatcacccttcagaatgatctttattaggaaaacacct
ccatggggatcatggggagtcatgcttgggccttgggtggaaaagagcat
tatgagaacgttaagagtgattagcttgaaatgggagaataagaaacata
gctattacatacaccatcatgggggcagggcctacaaagcaaagagagcc
ttcacaggaacactgtgaacaaagatttatgacttttacagctttctaga
tatagcagaagttgtacacacagaatttaattgagctagcttatgtgaaa
agaagcatgtagaagcaagttattaagtagacttacatagcagtggcaag
agagactggagttgctcctctccccaacgtgttcaagatctgcagtctaa
ctttcactggaa

gaattccatgcacagaacataatcccttagtacttttacaaaggtacagg
agaaggctggtttttcacttctctatattgcaaaatgcattcaggaaatg
gactttggagtaccgaaacacttatgcaagacttgagtacatatgacact
aataaaattgatttagttcattcatatattttctgtactaacagccttta
ctttaccgagaggcccgagtttgcttggagtgctgcaactgtaaatccta
ctttgtaaggattatgctttcacttttgcatatagagtaccaatgggaca
tcacccaagcatttggcttcaactcctatgaagcacagatgttgtgcatt
aaatgtggagccctagtatgcctctaaaatggcaagtacagaatgtggta
tcttagatgtctttgccctactgaaatatgtatagcccaagcacaccaag
ccatggccattttctcagctggtgaatctgcttacctgttggaaccccag
atttctgccttctgaatttcaaaatgctttctagcacctaaatgttctag
gtctgagaatactggctcattactctgcacaccccaatggtgcttttgcc
tcactgccagcttaaaatagatccagttagtctggcatctgatactatct
agtatcagcctctactagatctttagataactttggagagctctgttttt
cctctcctatttggttataacatctggtaaagtgaacaaatagacaaatc
tttaaaacaatggaagaataacaaatcgtaaatgaaaaaatgaatgctaa
tcatttttgtttactgccgttattatgtagtcaggaaaacaaatttattt
gcttctctctctctctctctctctctctctctctctctctctctgtatcc
atatggagagaggtcaaaccatccttaagattatgagaatactcgactct
agtttttataaatgcatgggtcaatctgaagttgcagttacatttccctt
tcttctttctttcttcttcttcttcttcctcttcttcttcttcttcttct
ttcactcacttcttccttcttccttctttttttccttttttttggtttta
ggaacagatttttctctttggttgaccctgactgtcctgaactcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_40167850_40169022
seq2: B6Ng01-218E08.b_42_1203 (reverse)

seq1  TTCCAGTTGAAAGTTAGAACTTGCAGATCTTGACCAACGTTGGGGAGA-G  49
      |||||| |||||||||||   |||||||||||| | |||||||||||| |
seq2  TTCCAG-TGAAAGTTAGA--CTGCAGATCTTGAAC-ACGTTGGGGAGAGG  46

seq1  AGCAACTCCAGTTCCTCCTCTTGCCACTGCTATGTAAGTCCTACTTAATA  99
      ||||||||||||  || |||||||||||||||||||||| ||||||||||
seq2  AGCAACTCCAGT--CT-CTCTTGCCACTGCTATGTAAGT-CTACTTAATA  92

seq1  CTTGGCTTCTACATGCTTCTTTTCACATAGGCTAGGCTCAATTAAATTCT  149
        | ||||||||||||||||||||||||| |||| |||||||||||||||
seq2  ACTTGCTTCTACATGCTTCTTTTCACATAAGCTA-GCTCAATTAAATTCT  141

seq1  GTGGTGTACAACTTCCTGCTATATCCTAGAAAGCTGTAAAAGTCATAAAT  199
      || ||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  GT-GTGTACAACTT-CTGCTATAT-CTAGAAAGCTGTAAAAGTCATAAAT  188

seq1  CTTTGTTCACAGTGTTCCTGTGAAGGCTCTCTTTGCTTTGTAGGCCCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCACAGTGTTCCTGTGAAGGCTCTCTTTGCTTTGTAGGCCCTGC  238

seq1  CCCCATGATGGTGTATGTAATAGCTATGTTTCTTATTCTCCCATTTCAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGATGGTGTATGTAATAGCTATGTTTCTTATTCTCCCATTTCAAG  288

seq1  CTAATCACTCTTAACGTTCTCATAATGCTCTTTTCCACCCAAGGCCCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCACTCTTAACGTTCTCATAATGCTCTTTTCCACCCAAGGCCCAAG  338

seq1  CATGACTCCCCATGATCCCCATGGAGGTGTTTTCCTAATAAAGATCATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCCCCATGATCCCCATGGAGGTGTTTTCCTAATAAAGATCATTC  388

seq1  TGAAGGGTGATTATTATTAACTTCTTTCTTCCTGGACTAGAAATGCTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTGATTATTATTAACTTCTTTCTTCCTGGACTAGAAATGCTTGT  438

seq1  TATAAATATGTTTACATCATGAAAGTCATACTGAAATTGGAAGAATGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATGTTTACATCATGAAAGTCATACTGAAATTGGAAGAATGAAA  488

seq1  TCAACAGGCTAGAGAATGCAGGTGTGAAGGAAATGGGGTATTTGTTATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGCTAGAGAATGCAGGTGTGAAGGAAATGGGGTATTTGTTATGA  538

seq1  TATTGCTGATGGGGAGCAAACTGTGAAACCATGTATTCGATTTAAAAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGATGGGGAGCAAACTGTGAAACCATGTATTCGATTTAAAAGGA  588

seq1  TCTTGGCTCTAGCTGATGCAGGCCCAGACAGTCTAGTGTTCAAGAGAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTCTAGCTGATGCAGGCCCAGACAGTCTAGTGTTCAAGAGAAGT  638

seq1  TAGAAGTAGGAATTTTCAATGTGACCCTTCTCTATTTTGAAAAACTGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGGAATTTTCAATGTGACCCTTCTCTATTTTGAAAAACTGGCA  688

seq1  ACTAAGTCAGTCAATAAAAACAACGACAACATCATGTCTGTAAATAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCAGTCAATAAAAACAACGACAACATCATGTCTGTAAATAAACT  738

seq1  GTCCATAGCTTGTTTCAGCTTATAGGTTCTTCCTATGCTATATAAGAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAGCTTGTTTCAGCTTATAGGTTCTTCCTATGCTATATAAGAGTT  788

seq1  AGACTATTCTCATATTGCACTTGTAAAGCCTATGCCATTTAATATGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTCTCATATTGCACTTGTAAAGCCTATGCCATTTAATATGGTGA  838

seq1  GCATTCTTCTGTTATTTTGGCTGTTTTACATATTTTCTTAGAGACCAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTGTTATTTTGGCTGTTTTACATATTTTCTTAGAGACCAAGT  888

seq1  AAAAGGCTAATTTATGGTAAGCCCCTGTTTCATCTGCTTATGATATTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTAATTTATGGTAAGCCCCTGTTTCATCTGCTTATGATATTTAA  938

seq1  ATCAGCAGAGTCTAATGAATGATTTTCATTCATTTTCTAATTACATGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGAGTCTAATGAATGATTTTCATTCATTTTCTAATTACATGATT  988

seq1  TTCATGGCAAACTGTAGATGTGATAGATATCACTCACTGTTAACTGTGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCAAACTGTAGATGTGATAGATATCACTCACTGTTAACTGTGTC  1038

seq1  TGGGTCTATAGAGCATCTGCATTTGTGCTTACATATAATGATAATTTGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTATAGAGCATCTGCATTTGTGCTTACATATAATGATAATTTGAT  1088

seq1  CATTATATGATTATATAAAAATATTTTTAAGATATCATAGGAACTCCAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATGATTATATAAAAATATTTTTAAGATATCATAGGAACTCCAGT  1138

seq1  GCCTATACAGACCAAGTAGAATTC  1173
      ||||||||||||||||||||||||
seq2  GCCTATACAGACCAAGTAGAATTC  1162


seq1: chrX_40017631_40018806
seq2: B6Ng01-218E08.g_65_1213

seq1  GAATTCCATGCACAGAACATAATCCCTTAGTACTTTTACAAAGGTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCACAGAACATAATCCCTTAGTACTTTTACAAAGGTACAGG  50

seq1  AGAAGGCTGGTTTTTCACTTCTCTATATTGCAAAATGCATTCAGGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGGTTTTTCACTTCTCTATATTGCAAAATGCATTCAGGAAATG  100

seq1  GACTTTGGAGTACCGAAACACTTATGCAAGACTTGAGTACATATGACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGAGTACCGAAACACTTATGCAAGACTTGAGTACATATGACACT  150

seq1  AATAAAATTGATTTAGTTCATTCATATATTTTCTGTACTAACAGCCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTGATTTAGTTCATTCATATATTTTCTGTACTAACAGCCTTTA  200

seq1  CTTTACCGAGAGGCCCGAGTTTGCTTGGAGTGCTGCAACTGTAAATCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCGAGAGGCCCGAGTTTGCTTGGAGTGCTGCAACTGTAAATCCTA  250

seq1  CTTTGTAAGGATTATGCTTTCACTTTTGCATATAGAGTACCAATGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAAGGATTATGCTTTCACTTTTGCATATAGAGTACCAATGGGACA  300

seq1  TCACCCAAGCATTTGGCTTCAACTCCTATGAAGCACAGATGTTGTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAGCATTTGGCTTCAACTCCTATGAAGCACAGATGTTGTGCATT  350

seq1  AAATGTGGAGCCCTAGTATGCCTCTAAAATGGCAAGTACAGAATGTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGAGCCCTAGTATGCCTCTAAAATGGCAAGTACAGAATGTGGTA  400

seq1  TCTTAGATGTCTTTGCCCTACTGAAATATGTATAGCCCAAGCACACCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATGTCTTTGCCCTACTGAAATATGTATAGCCCAAGCACACCAAG  450

seq1  CCATGGCCATTTTCTCAGCTGGTGAATCTGCTTACCTGTTGGAACCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCATTTTCTCAGCTGGTGAATCTGCTTACCTGTTGGAACCCCAG  500

seq1  ATTTCTGCCTTCTGAATTTCAAAATGCTTTCTAGCACCTAAATGTTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCCTTCTGAATTTCAAAATGCTTTCTAGCACCTAAATGTTCTAG  550

seq1  GTCTGAGAATACTGGCTCATTACTCTGCACACCCCAATGGTGCTTTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGAATACTGGCTCATTACTCTGCACACCCCAATGGTGCTTTTGCC  600

seq1  TCACTGCCAGCTTAAAATAGATCCAGTTAGTCTGGCATCTGATACTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCAGCTTAAAATAGATCCAGTTAGTCTGGCATCTGATACTATCT  650

seq1  AGTATCAGCCTCTACTAGATCTTTAGATAACTTTGGAGAGCTCTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGCCTCTACTAGATCTTTAGATAACTTTGGAGAGCTCTGTTTTT  700

seq1  CCTCTCCTATTTGGTTATAACATCTGGTAAAGTGAACAAATAGACAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTATTTGGTTATAACATCTGGTAAAGTGAACAAATAGACAAATC  750

seq1  TTTAAAACAATGGAAGAATAACAAATCGTAAATGAAAAAATGAATGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAATGGAAGAATAACAAATCGTAAATGAAAAAATGAATGCTAA  800

seq1  TCATTTTTGTTTACTGCCGTTATTATGTAGTCAGGAAAACAAATTTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTGTTTACTGCCGTTATTATGTAGTCAGGAAAACAAATTTATTT  850

seq1  GCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTA-TC  899

seq1  CATATGGAGAGAAGTCAAACCATCCTTAAGATTATGAGAATACTCGACTC  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATATGGAGAGAGGTCAAACCATCCTTAAGATTATGAGAATACTCGACTC  949

seq1  TAG-TTTTATAAATGCAT-GGTCAATCTGAAGTTGCAGGTTACATTTCTC  998
      ||| |||||||||||||| |||||||||||||||||| |||||||||| |
seq2  TAGTTTTTATAAATGCATGGGTCAATCTGAAGTTGCA-GTTACATTTCCC  998

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  1048
      ||||             |||||||||||||   |||||   ||||| || 
seq2  TTTC-------------TTCTTTCTTTCTT--CTTCTT--CTTCTTCCTC  1031

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTATCTCTCTTTCTTCCTTCCTTCC  1098
      |  |||||   |||||   |||||||  || |   ||||||||| |||||
seq2  TTCTTCTT--CTTCTT--CTTCTTTCACTCAC---TTCTTCCTT-CTTCC  1073

seq1  TTTCTTTTTTTTCTTTTTTTTTTGTTTTTTTGAGACAG-GGTTTCTCTGT  1147
       |||||||||| |  ||||||||| ||||  || ||||   ||||||| |
seq2  -TTCTTTTTTTCC--TTTTTTTTGGTTTTAGGA-ACAGATTTTTCTCTTT  1119

seq1  G--TAGCCCTGGCTGTCCTGGAACTCACTCT  1176
      |  |  ||||| ||||||| |||||||||||
seq2  GGTTGACCCTGACTGTCCT-GAACTCACTCT  1149


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