BAC Information

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BAC

Clone NameB6Ng01-219C22
ChromosomeX (Build37)
Map Location 111,414,696 - 111,515,655
singlet/doubletdoublet
Overlap geneLOC100039201
Upstream geneDach2, LOC237016, EG664945, EG634881
Downstream geneKlhl4, Gm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362, LOC100039255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219C22.bB6Ng01-219C22.g
ACCGA035102GA035103
length1,1581,073
definitionB6Ng01-219C22.b B6Ng01-219C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,414,696 - 111,415,452)(111,514,574 - 111,515,655)
sequence
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacatattccactttacttctgatagactg
tcttgaatttccttagaaagttcaagatcagacttacctcgtaaagctgt
actcactggtactctcgttccccagctgaaaagttctgaattcatacagt
tgaatccttcttaacagtctgctttacgggaacctttattaccgcgaccc
gcagttctggttctggaatgagggatcttccttgcgccagtcccgagttt
tttctcgtcccggaattcggcaccaattgttattagacgcgttctcacga
ccggccaggaaagacgcaacaaaccagaatcttctgcggcaaagctttat
tgcttacatcttcaggagccagagtgcaagaagcaagagagcaagaagca
agagagagagaaaacgaaaccccgtccctattttaggagagttatccctc
gcctaggacgtgtcactccctgattggctgcagcccatcggccgagttga
cgtcacggggaaaggcagagcacatggagtgaagaaccaccctcggcaca
tgcgcagattatttgtttaccacttagaacacagctgtcagcgccatctt
gtaacggcgaatgtgggcgcggctcccaacagatatctataagacaaata
aaatgataggagcttgggctgaaaaatatacatttcatgttttagtacta
ctagggaaaatctatgacttttttctggatgatattgaccagccataatt
ttttaagaagttttttttttaatttatgcatgtggagtacctgtcactgc
tcgaacca

gaattccacaggaagaccaactgagtcaacaaatctggggctcccagaga
ctgaaccacaggttgggcatagtcctctctgcacaaatgtagcggatgag
cagcttggtcttcatgtgggtcctgaacaactggagcaggggctatcccc
aaaactgttgcttttctatggaaaatgttcttctagctgagctgcctttc
tggcctcagtgggaaagatatgccaagccttgcagagactttaagtgcta
gggtgggggttatccagaggaacccacccactcagaggaaaagataaagg
gtaagcattgtgggagtagtgtctgggagaggggcagtgagtaggatgca
atgtgaataagtaaaaagaaatatgagcttgtgactgcatcttcacatgc
attattaggaataactccttcgctgaggcattaagaaatgtgtttggaaa
gaaacactctgaaaagccaaaagaaaaataaagaaaagaaacaattcttg
tttcaaatttaatattcatatttatttaggctcatatacaaaataacttg
tttaaatcaatattactcattaattttctcccctgtggcttttcccttta
atgaattttgtttatggatatggtgttggtaaattttgtgcttgagtaca
gatatgtatgaatagtctcaccttgaccagtgacagaattttgttactat
agtagaaaaatgcagttgttttttcaaaatggaatagtgagatattggta
gtgtccatcagttgccatgactccccacaaaatagcatatctaaattttc
cccatttagaaaaaaacacatcaaaaagagcatcatgcttacagaaacat
gtgattattataaatttactgcttttaattttactttgcaaggcatacta
tgacccttaagtatagaggactagaaatagttacattagcaataagtagt
tgaagcttcaaaacaaggcattagtaacatagaagggaataactcactta
gaggaacactaaagcttttttgactttaaaaatctgaaaaatacataaaa
gggtcgataaccatgaatctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_111414696_111415452
seq2: B6Ng01-219C22.b_566_1200

seq1  TTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGG  50

seq1  GATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCAC  100

seq1  CAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAA  150

seq1  CCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGA  200

seq1  GTGCAAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCC  250

seq1  GTCCCTATTTTAGGAGAGTTATCCCTCGCCTAGGACGTGTCACTCCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTATTTTAGGAGAGTTATCCCTCGCCTAGGACGTGTCACTCCCTGA  300

seq1  TTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGGG-AAGGCAGAGCAC  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAAGGCAGAGCAC  350

seq1  ATGGAGTGAAGAACCACCCTCGGCACATGCGCAGATTATTTGTTTACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGAAGAACCACCCTCGGCACATGCGCAGATTATTTGTTTACCAC  400

seq1  TTAGAACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGC  450

seq1  TCCCAACAGATATCTATAAGAACAAAATAAAATGATAGGGAGCTTTGGGC  499
      |||||||||||||||||||||   ||||||||||||| ||||| ||||||
seq2  TCCCAACAGATATCTATAAGA--CAAATAAAATGATA-GGAGC-TTGGGC  496

seq1  TTGAAAAATATACATTTTCATGTTTTAGTACTTAACTAAGGGAAAAATCT  549
       ||||||||||||| |||||||||||||||||  ||||  || |||||||
seq2  -TGAAAAATATACA-TTTCATGTTTTAGTACT--ACTA--GGGAAAATCT  540

seq1  ATGAC-TTTTTCTGGATGAATATTTGAACAGGCAATTAATTTTTTTAAGA  598
      ||||| |||||||||||| ||| |||| ||| ||  ||||||||| |  |
seq2  ATGACTTTTTTCTGGATG-ATA-TTGACCAGCCA--TAATTTTTTAAGAA  586

seq1  GTTTTTTTTTTTTTATTTTATGTATGT-GAGTACACTGTCACTGTCTTCA  647
      |   ||||||||||| |||||| |||| |||||| ||||||||| ||  |
seq2  G---TTTTTTTTTTAATTTATGCATGTGGAGTAC-CTGTCACTG-CTCGA  631

seq1  GACACAGCAGAAGAGGGCATCAGATCCCATTACAGGTGGTTGTGAGCCAC  697
        ||                                              
seq2  ACCA----------------------------------------------  635

seq1  TATGTGGTTGTTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCACTG  747
                                                        
seq2  --------------------------------------------------  635

seq1  CTCTTAACCA  757
                
seq2  ----------  635


seq1: chrX_111514574_111515655
seq2: B6Ng01-219C22.g_64_1136 (reverse)

seq1  TATAGATCAATGTGTTATCTGACCCTTTTTATGTATTTTTCAGGTTTTTT  50
      |||||||  ||| |||||| ||||| |||||||||||||||| | |||||
seq2  TATAGATTCATG-GTTATC-GACCC-TTTTATGTATTTTTCA-GATTTTT  46

seq1  AAAGTCAAAAAAGCTTTTAGGTGTTCCCTCTAAGTGGGTTTATCCTTTCT  100
      |||||||||||||||||   ||||| |||||||||| |||  ||| ||||
seq2  AAAGTCAAAAAAGCTTT--AGTGTT-CCTCTAAGTGAGTTATTCCCTTCT  93

seq1  AATGTTACTAAATGGCTTGTTTTTGAAAGCTTCAACTATTTATTGCTAAT  150
       |||||||| |||| ||||||||   |||||||||||| |||||||||||
seq2  -ATGTTACT-AATGCCTTGTTTT--GAAGCTTCAACTACTTATTGCTAAT  139

seq1  GTACTTATTTTCTAGTCCTCTATACTTAA-GGTCATAGTATGCCTTGCAA  199
      |||  || ||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAACTA-TTTCTAGTCCTCTATACTTAAGGGTCATAGTATGCCTTGCAA  188

seq1  AGTAAAATTAAAAGCAGTAAA-TTATAATAATCACATGTTTCTGTAAGCA  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTAAAATTAAAAGCAGTAAATTTATAATAATCACATGTTTCTGTAAGCA  238

seq1  TGATGCTCTTTTTGATGTGTTTTTTTCTAAATGGGG-AAATTTAGATATG  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGATGCTCTTTTTGATGTGTTTTTTTCTAAATGGGGAAAATTTAGATATG  288

seq1  CTATTTTGTGGGGAGTCATGGCAACTGATGGACACTACCAATATCTCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGTGGGGAGTCATGGCAACTGATGGACACTACCAATATCTCACT  338

seq1  ATTCCATTTTGAAAAAACAACTGCATTTTTCTACTATAGTAACAAAATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTTGAAAAAACAACTGCATTTTTCTACTATAGTAACAAAATTC  388

seq1  TGTCACTGGTCAAGGTGAGACTATTCATACATATCTGTACTCAAGCACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGGTCAAGGTGAGACTATTCATACATATCTGTACTCAAGCACAA  438

seq1  AATTTACCAACACCATATCCATAAACAAAATTCATTAAAGGGAAAAGCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCAACACCATATCCATAAACAAAATTCATTAAAGGGAAAAGCCA  488

seq1  CAGGGGAGAAAATTAATGAGTAATATTGATTTAAACAAGTTATTTTGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGAAAATTAATGAGTAATATTGATTTAAACAAGTTATTTTGTAT  538

seq1  ATGAGCCTAAATAAATATGAATATTAAATTTGAAACAAGAATTGTTTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTAAATAAATATGAATATTAAATTTGAAACAAGAATTGTTTCTT  588

seq1  TTCTTTATTTTTCTTTTGGCTTTTCAGAGTGTTTCTTTCCAAACACATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTTTCTTTTGGCTTTTCAGAGTGTTTCTTTCCAAACACATTT  638

seq1  CTTAATGCCTCAGCGAAGGAGTTATTCCTAATAATGCATGTGAAGATGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGCCTCAGCGAAGGAGTTATTCCTAATAATGCATGTGAAGATGCA  688

seq1  GTCACAAGCTCATATTTCTTTTTACTTATTCACATTGCATCCTACTCACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGCTCATATTTCTTTTTACTTATTCACATTGCATCCTACTCACT  738

seq1  GCCCCTCTCCCAGACACTACTCCCACAATGCTTACCCTTTATCTTTTCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTCCCAGACACTACTCCCACAATGCTTACCCTTTATCTTTTCCT  788

seq1  CTGAGTGGGTGGGTTCCTCTGGATAACCCCCACCCTAGCACTTAAAGTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGGTGGGTTCCTCTGGATAACCCCCACCCTAGCACTTAAAGTCT  838

seq1  CTGCAAGGCTTGGCATATCTTTCCCACTGAGGCCAGAAAGGCAGCTCAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGGCTTGGCATATCTTTCCCACTGAGGCCAGAAAGGCAGCTCAGC  888

seq1  TAGAAGAACATTTTCCATAGAAAAGCAACAGTTTTGGGGATAGCCCCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAACATTTTCCATAGAAAAGCAACAGTTTTGGGGATAGCCCCTGC  938

seq1  TCCAGTTGTTCAGGACCCACATGAAGACCAAGCTGCTCATCCGCTACATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGTTCAGGACCCACATGAAGACCAAGCTGCTCATCCGCTACATT  988

seq1  TGTGCAGAGAGGACTATGCCCAACCTGTGGTTCAGTCTCTGGGAGCCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAGAGGACTATGCCCAACCTGTGGTTCAGTCTCTGGGAGCCCCA  1038

seq1  GATTTGTTGACTCAGTTGGTCTTCCTGTGGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  GATTTGTTGACTCAGTTGGTCTTCCTGTGGAATTC  1073


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