BAC Information

Click to search

BAC

Clone NameB6Ng01-220D05
ChromosomeX (Build37)
Map Location 84,304,194 - 84,445,029
singlet/doubletdoublet
Overlap geneIl1rapl1
Upstream geneNr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneLOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220D05.bB6Ng01-220D05.g
ACCGA035821GA035822
length1,1291,063
definitionB6Ng01-220D05.b B6Ng01-220D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,304,194 - 84,305,325)(84,443,968 - 84,445,029)
sequence
gaattctaactgattgcatatctgattttaagcatttaaagtaaattgat
gtgtgtactcagagataaagtttaaaatggtgagaaaaagaaaacaatgc
atggctagtgaaattatgataaaacctagaaaaaggatgctgattgatat
aacagctataatcaagaaggtgagcatgccaattattgttttcacttctg
ttgacaggaaaatagaaaacaagcacacacacacacacacacacacacag
caaatcctgatggttactaatcagctttctggcacaatgaataattccaa
aaaaattatatgttctccaatcttctgtagcaaggtggaagtatgcaaaa
attattatagtatattattttttattgatatgtaaatgatttcatataaa
aattaataaacacatttttgaaatgttattgaaagtaaattgtagatcag
atgaatggcatcatgctaccaataagaatcaatacatttaaaattatttt
cttttcatggcataacaccataaaacattatagctccatagcataacata
gtgcaatttagtgaccttccagattatactgagttggtttatttatagct
atatttctgcagaatgttacatttcttgaggttttttatactaacgtgtg
tgaccctatgttttcaagtagggttgttatgagtagtaggaagtatattt
tgacttttgttgccaaatagcttagaacttttaggaactcctcctccagg
tgttttattcttttaagattaaaaataatgtctgataactatttattgaa
aatggtgttattacctacatttcaagcccaaattatacaaagattacaat
tatctgggagacagaaatcgactgacgacacagactgaaaacacaaggca
tctgaagactcagcctgggctctcggagtagtcacagtcagggaatcatc
tctaaaacccttcataggctcagcatgcaaaaagggtaaagtttagtaag
tatgcagtggatacatgaaaaacaaaggtaggatgattagttaatagtca
aataagagtggagtatctactatcctatcctgaacctcataagtagtatt
cactgcaaagggcctctttcccacaccca

gaattcttctgtgtagacgtagctgattggactggattgctgtttttatc
agtctttcattatttctcttgtgcaggacatggtcttcacacctgatgtc
atttttttggctaattttgtatcaacttgacacaagctagaatctttgga
agagagtttcaattgataaagacgcctccacaagattggtctgtgggaaa
acctgtgatgcatttctttgagtagtgattggtatgggaagtcccattta
ctgtgcatagtgctttccctgggtcagttttcctgggtatataagcaagt
cagaaagagcaagcaaacagcattcctctaaagctcctgcttcagctcct
acctccagctttctgctttgagttcttgtcctgacttcactcagtgatgc
actgtgatgtagatgtgtaagctgataaaaatctttcctctccaagttgc
tcttggtcatggtgctttatcacagccatagaaaccctaagacattatct
aagttctttttggttttgtttatttttttctttttatgacaccttactga
ttgttccttgtcttttatttttgtagccctgcttttccatttccattcaa
attctttcgaagtgcttcagtgttttttttttctttttttcagtgggttg
tatagatagtatcctagttcttcataaaccaggcacaattcaacagaata
agagagtattgagtcacatatcacacttccatacatcagagagtaaatct
tacagatatgtgtccatatagaaatggtaaaatctaatgaataaatcctg
gtggtctattatacaaggtgaatatcattaatgataatgtatttttgtgg
aagaataagttttaaatcacaaaaacaaatggaaactctcacagatcaat
gaaaacagtatcctaattattctgacagtggtaattacttcatgtatgtg
tatatcaaaagttattttgtacagtcaaatatattgagtattaaattgac
aatttataataccataaagcaaggggtgaaaaatacaagatgcatggaat
tcatgtaaaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_84304194_84305325
seq2: B6Ng01-220D05.b_46_1174

seq1  GAATTCTAACTGATTGCATATCTGATTTTAAGCATTTAAAGTAAATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTGATTGCATATCTGATTTTAAGCATTTAAAGTAAATTGAT  50

seq1  GTGTGTACTCAGAGATAAAGTTTAAAATGGTGAGAAAAAGAAAACAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTCAGAGATAAAGTTTAAAATGGTGAGAAAAAGAAAACAATGC  100

seq1  ATGGCTAGTGAAATTATGATAAAACCTAGAAAAAGGATGCTGATTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGTGAAATTATGATAAAACCTAGAAAAAGGATGCTGATTGATAT  150

seq1  AACAGCTATAATCAAGAAGGTGAGCATGCCAATTATTGTTTTCACTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTATAATCAAGAAGGTGAGCATGCCAATTATTGTTTTCACTTCTG  200

seq1  TTGACAGGAAAATAGAAAACAAGCACACACACACACACACACACACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGAAAATAGAAAACAAGCACACACACACACACACACACACACAG  250

seq1  CAAATCCTGATGGTTACTAATCAGCTTTCTGGCACAATGAATAATTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTGATGGTTACTAATCAGCTTTCTGGCACAATGAATAATTCCAA  300

seq1  AAAAATTATATGTTCTCCAATCTTCTGTAGCAAGGTGGAAGTATGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATATGTTCTCCAATCTTCTGTAGCAAGGTGGAAGTATGCAAAA  350

seq1  ATTATTATAGTATATTATTTTTTATTGATATGTAAATGATTTCATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAGTATATTATTTTTTATTGATATGTAAATGATTTCATATAAA  400

seq1  AATTAATAAACACATTTTTGAAATGTTATTGAAAGTAAATTGTAGATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAAACACATTTTTGAAATGTTATTGAAAGTAAATTGTAGATCAG  450

seq1  ATGAATGGCATCATGCTACCAATAAGAATCAATACATTTAAAATTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGCATCATGCTACCAATAAGAATCAATACATTTAAAATTATTTT  500

seq1  CTTTTCATGGCATAACACCATAAAACATTATAGCTCCATAGCATAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGGCATAACACCATAAAACATTATAGCTCCATAGCATAACATA  550

seq1  GTGCAATTTAGTGACCTTCCAGATTATACTGAGTTGGTTTATTTATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTTAGTGACCTTCCAGATTATACTGAGTTGGTTTATTTATAGCT  600

seq1  ATATTTCTGCAGAATGTTACATTTCTTGAGGTTTTTTATACTAACGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGCAGAATGTTACATTTCTTGAGGTTTTTTATACTAACGTGTG  650

seq1  TGACCCTATGTTTTCAAGTAGGGTTGTTATGAGTAGTAGGAAGTATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTATGTTTTCAAGTAGGGTTGTTATGAGTAGTAGGAAGTATATTT  700

seq1  TGACTTTTGTTGCCAAATAGCTTAGAACTTTTAGGAACTCCTCCTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTGTTGCCAAATAGCTTAGAACTTTTAGGAACTCCTCCTCCAGG  750

seq1  TGTTTTATTCTTTTAAGATTAAAAATAATGTCTGATAACTATTTATTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTCTTTTAAGATTAAAAATAATGTCTGATAACTATTTATTGAA  800

seq1  AATGGTGTTATTACCTACATTTCAAGCCCAAATTATACAAAGATTACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTATTACCTACATTTCAAGCCCAAATTATACAAAGATTACAAT  850

seq1  TATCTGGGAGACAGAAATCGACTGACGACACAGACTGAAAACACAAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGAGACAGAAATCGACTGACGACACAGACTGAAAACACAAGGCA  900

seq1  TCTGAAGACTCAGCCTGGGCTCTCGGAGTAGGTCACAGTCA-GGAATCAT  949
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  TCTGAAGACTCAGCCTGGGCTCTCGGAGTA-GTCACAGTCAGGGAATCAT  949

seq1  CTCTAAAACCCTTCATAGGCTCAGCATGCAAAAA-GGTAAAGTTTAGTAA  998
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTAAAACCCTTCATAGGCTCAGCATGCAAAAAGGGTAAAGTTTAGTAA  999

seq1  GTATGCAGTGGATACATGAAAAACAAAAGTAGGATGAATTAGTTAATAAG  1048
      ||||||||||||||||||||||||||| |||||||| |||||||||| ||
seq2  GTATGCAGTGGATACATGAAAAACAAAGGTAGGATG-ATTAGTTAAT-AG  1047

seq1  TCAAATAAAGAGT-GAGTAATCTACTATCCTATCTTGAAACCTCATAAAG  1097
      |||||| |||||| |||| ||||||||||||||| || |||||||| |||
seq2  TCAAAT-AAGAGTGGAGT-ATCTACTATCCTATCCTG-AACCTCAT-AAG  1093

seq1  TAGTAATCACTGCAAA-GGCCTCTTTCCCACACCCA  1132
      ||||| |||||||||| |||||||||||||||||||
seq2  TAGTATTCACTGCAAAGGGCCTCTTTCCCACACCCA  1129


seq1: chrX_84443968_84445029
seq2: B6Ng01-220D05.g_69_1131 (reverse)

seq1  AACCTTACCATGAATTCCAATGCATCTTGTA-TTTTCACCCCTTGCTTTA  49
      ||||||  |||||||||| |||||||||||| ||||||||||||||||||
seq2  AACCTTTACATGAATTCC-ATGCATCTTGTATTTTTCACCCCTTGCTTTA  49

seq1  TGGTA-TAT-AATTGTCAATTTAATACTCAATATATTTGACTGTACAAAA  97
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTATAAATTGTCAATTTAATACTCAATATATTTGACTGTACAAAA  99

seq1  TAACTTTTTGATATACACATACATGAAGTAATTACCACTGTCAGAATAAT  147
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAC-TTTTGATATACACATACATGAAGTAATTACCACTGTCAGAATAAT  148

seq1  TAGGATACTGTTTTCATTGATCTGTGAGAGTTTCCATTTGTTTTTGTGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACTGTTTTCATTGATCTGTGAGAGTTTCCATTTGTTTTTGTGAT  198

seq1  TTAAAACTTATTCTTCCACAAAAATACATTATCATTAATGATATTCACCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTATTCTTCCACAAAAATACATTATCATTAATGATATTCACCT  248

seq1  TGTATAATAGACCACCAGGATTTATTCATTAGATTTTACCATTTCTATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATAGACCACCAGGATTTATTCATTAGATTTTACCATTTCTATAT  298

seq1  GGACACATATCTGTAAGATTTACTCTCTGATGTATGGAAGTGTGATATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATATCTGTAAGATTTACTCTCTGATGTATGGAAGTGTGATATGT  348

seq1  GACTCAATACTCTCTTATTCTGTTGAATTGTGCCTGGTTTATGAAGAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATACTCTCTTATTCTGTTGAATTGTGCCTGGTTTATGAAGAACT  398

seq1  AGGATACTATCTATACAACCCACTGAAAAAAAGAAAAAAAAAACACTGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTATCTATACAACCCACTGAAAAAAAGAAAAAAAAAACACTGAA  448

seq1  GCACTTCGAAAGAATTTGAATGGAAATGGAAAAGCAGGGCTACAAAAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCGAAAGAATTTGAATGGAAATGGAAAAGCAGGGCTACAAAAATA  498

seq1  AAAGACAAGGAACAATCAGTAAGGTGTCATAAAAAGAAAAAAATAAACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGGAACAATCAGTAAGGTGTCATAAAAAGAAAAAAATAAACAA  548

seq1  AACCAAAAAGAACTTAGATAATGTCTTAGGGTTTCTATGGCTGTGATAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAGAACTTAGATAATGTCTTAGGGTTTCTATGGCTGTGATAAA  598

seq1  GCACCATGACCAAGAGCAACTTGGAGAGGAAAGATTTTTATCAGCTTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGACCAAGAGCAACTTGGAGAGGAAAGATTTTTATCAGCTTACA  648

seq1  CATCTACATCACAGTGCATCACTGAGTGAAGTCAGGACAAGAACTCAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATCACAGTGCATCACTGAGTGAAGTCAGGACAAGAACTCAAAG  698

seq1  CAGAAAGCTGGAGGTAGGAGCTGAAGCAGGAGCTTTAGAGGAATGCTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTGGAGGTAGGAGCTGAAGCAGGAGCTTTAGAGGAATGCTGTT  748

seq1  TGCTTGCTCTTTCTGACTTGCTTATATACCCAGGAAAACTGACCCAGGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCTTTCTGACTTGCTTATATACCCAGGAAAACTGACCCAGGGA  798

seq1  AAGCACTATGCACAGTAAATGGGACTTCCCATACCAATCACTACTCAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTATGCACAGTAAATGGGACTTCCCATACCAATCACTACTCAAAG  848

seq1  AAATGCATCACAGGTTTTCCCACAGACCAATCTTGTGGAGGCGTCTTTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATCACAGGTTTTCCCACAGACCAATCTTGTGGAGGCGTCTTTAT  898

seq1  CAATTGAAACTCTCTTCCAAAGATTCTAGCTTGTGTCAAGTTGATACAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAACTCTCTTCCAAAGATTCTAGCTTGTGTCAAGTTGATACAAA  948

seq1  ATTAGCCAAAAAAATGACATCAGGTGTGAAGACCATGTCCTGCACAAGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCAAAAAAATGACATCAGGTGTGAAGACCATGTCCTGCACAAGAG  998

seq1  AAATAATGAAAGACTGATAAAAACAGCAATCCAGTCCAATCAGCTACGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAAAGACTGATAAAAACAGCAATCCAGTCCAATCAGCTACGTC  1048

seq1  TACACAGAAGAATTC  1062
      |||||||||||||||
seq2  TACACAGAAGAATTC  1063


| Home | SequenceCutter | Blast | Download |