BAC Information

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BAC

Clone NameB6Ng01-220P08
ChromosomeY (Build37)X (Build37)
Map Location 2,430,602 - 2,430,7307,890,988 - 7,891,833
singlet/doubletsingletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220P08.bB6Ng01-220P08.g
ACCGA036384GA036385
length410849
definitionB6Ng01-220P08.b B6Ng01-220P08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,430,602 - 2,430,730)(7,890,988 - 7,891,833)
sequence
tctttagatctgtacccactttttaattggattatttggttttctgacat
tgaatttcttgagcactttatatattttggatattgaccctctgtatatt
cagcgttggtgaatatcttttcccattctgtgtcctgccacgttttctga
atgactgtcctttgccttacagaagcctctcagtttattaggtcccactg
actgttgatcttagagcctggagtgttctgttcagaaaatcgtctcctgt
gacaataagttcaaaggtcctcactctctctctaactctctctctctctc
tctctctctctctctctctctctctctctctctctctctctcctctcccc
ctctctgtctccctcttgtgttctttctctctctccctctctttctctat
tctgtctata
gaattctacatcttgatccataggcagagtggtagaaggagagggagagg
agagagagaggagagagaaagagactgctgaacactgaactgccttgaac
ttttgaagccctaagcccccagtgacacatcaactctaacaaggtcatac
cactcaatccctctcaagtagtcactgaatatgcaaatctatgagcctac
agggaccattcccatccaaaccagcatggtggctaagcaaacagcccaga
gcaagctaaggaaggcaacttggtcacatgggagcagttgcatgattcta
gccaaactgcaaggcaaccttccttaaggccattgggtagagaacccatg
tagtgccatgagcctcaaagatgtgaagtaagaagagaagtagactggag
cttttgcagaagaagaaacaattattccccatccttgtttgtagctttgc
tctcttgctactttgcaggttcttctgtccccctttcttgcaaacatcag
ccctcctctcagtttccaggccagtcccttccaaagtgtgtcttcaccgc
tcctccctcagttccccaacagtgagataaaacagccccatctcccactt
ttccccaacactagcagctccaaacgcctaccagggtttatagtctatct
gctaagctcagcttctgctggctcacttgtcacaaactatcttctctctc
tgttagcactattatcttttatactgtctcctaaaaatatggtgtctggc
ttggctcaccctttcctggcgctacctcagatattcttctgattttccct
ctggtttttgagtaaatcaggttggatcattgcactcttctctctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2430602_2430730
seq2: B6Ng01-220P08.b_328_464

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
        ||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  --CTCTCTCTCTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  48

seq1  CTCTCTCTCTCTCTCTCTCTCTCTTTCTCCCTCTCTCTCTC---------  91
      ||||||||||||||||||||| || || |||||||| ||||         
seq2  CTCTCTCTCTCTCTCTCTCTC-CTCTCCCCCTCTCTGTCTCCCTCTTGTG  97

seq1  -TCTTTCTCTCTCTCTCTCTGTCCTTCT-GTGTGTCTATA  129
       |||||||||||||| |||| |   |||  | ||||||||
seq2  TTCTTTCTCTCTCTCCCTCTCTTTCTCTATTCTGTCTATA  137

seq1: chrX_7890988_7891833
seq2: B6Ng01-220P08.g_68_916

seq1  GAATTCTACATCTTGATCCATAGGCAGAGTGGTAGAAGGAGAGGGAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTGATCCATAGGCAGAGTGGTAGAAGGAGAGGGAGAGG  50

seq1  AGAGAGAGAGGAGAGAGAAAGAGACTGCTGAACACTGAACTGCCTTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGGAGAGAGAAAGAGACTGCTGAACACTGAACTGCCTTGAAC  100

seq1  TTTTGAAGCCCTAAGCCCCCAGTGACACATCAACTCTAACAAGGTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGCCCTAAGCCCCCAGTGACACATCAACTCTAACAAGGTCATAC  150

seq1  CACTCAATCCCTCTCAAGTAGTCACTGAATATGCAAATCTATGAGCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAATCCCTCTCAAGTAGTCACTGAATATGCAAATCTATGAGCCTAC  200

seq1  AGGGACCATTCCCATCCAAACCAGCATGGTGGCTAAGCAAACAGCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCATTCCCATCCAAACCAGCATGGTGGCTAAGCAAACAGCCCAGA  250

seq1  GCAAGCTAAGGAAGGCAACTTGGTCACATGGGAGCAGTTGCATGATTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTAAGGAAGGCAACTTGGTCACATGGGAGCAGTTGCATGATTCTA  300

seq1  GCCAAACTGCAAGGCAACCTTCCTTAAGGCCATTGGGTAGAGAACCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTGCAAGGCAACCTTCCTTAAGGCCATTGGGTAGAGAACCCATG  350

seq1  TAGTGCCATGAGCCTCAAAGATGTGAAGTAAGAAGAGAAGTAGACTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCATGAGCCTCAAAGATGTGAAGTAAGAAGAGAAGTAGACTGGAG  400

seq1  CTTTTGCAGAAGAAGAAACAATTATTCCCCATCCTTGTTTGTAGCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCAGAAGAAGAAACAATTATTCCCCATCCTTGTTTGTAGCTTTGC  450

seq1  TCTCTTGCTACTTTGCAGGTTCTTCTGTCCCCCTTTCTTGCAAACATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTACTTTGCAGGTTCTTCTGTCCCCCTTTCTTGCAAACATCAG  500

seq1  CCCTCCTCTCAGTTTCCAGGCCAGTCCCTTCCAAAGTGTGTCTTCACCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTCAGTTTCCAGGCCAGTCCCTTCCAAAGTGTGTCTTCACCGC  550

seq1  TCCTCCCTCAGTTCCCCAACAGTGAGATAAAACAGCCCCATCTCCCAC-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTCCCTCAGTTCCCCAACAGTGAGATAAAACAGCCCCATCTCCCACTT  600

seq1  TTCCCCAACACTAGCAGCTCCAAACGCCTACCAGGG-TTATAGTCTATCT  648
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCCCAACACTAGCAGCTCCAAACGCCTACCAGGGTTTATAGTCTATCT  650

seq1  GCTAAGCTCAGCTTCTGCTGGCTCACTTGTCACAAACTATCTTCTCTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCTCAGCTTCTGCTGGCTCACTTGTCACAAACTATCTTCTCTCTC  700

seq1  TGTTAGCACTATTATC-TTTATACTGTCTCCTAAAAATATGGTGTCTGGC  747
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTTAGCACTATTATCTTTTATACTGTCTCCTAAAAATATGGTGTCTGGC  750

seq1  TTGGCTCACCTTTTCCTGGCGCTACCTCAGATATTCTTCTGATTTTCCCT  797
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCACCCTTTCCTGGCGCTACCTCAGATATTCTTCTGATTTTCCCT  800

seq1  CTGGTTTTTGAGTAAATCAAGTTGGATCATTGCACTCTTCTCTCTCCTC  846
      ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGGTTTTTGAGTAAATCAGGTTGGATCATTGCACTCTTCTCTCTCCTC  849