BAC Information

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BAC

Clone NameB6Ng01-222J07
ChromosomeX (Build37)
Map Location 17,820,757 - 18,010,936
singlet/doubletdoublet
Overlap geneUtx, LOC100043952, 4930578C19Rik
Upstream geneEfhc2, Fundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951
Downstream geneLOC100043098, EG628855, LOC385333, EG628871, LOC100043953
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222J07.bB6Ng01-222J07.g
ACCGA037560GA037561
length1,0261,075
definitionB6Ng01-222J07.b B6Ng01-222J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,010,391 - 18,010,936)(17,820,757 - 17,821,836)
sequence
gaattctacctgggactttccagagggtcagtacattctgagaattttta
ctcaagaatgttcctgtgggtggagaatggaacttggcctagccttgacc
ccagggaggagagggaagctgtaaggaggatgtgggactggaaaaagccc
ttagggtcactcattccgccctttttctgatatgagctctaatcctggag
ttacactcaggggtcttgcataactaactcatattcttcaagtcctatcc
tcagggtctcatattgttagtgcaggactatcagctgtactggtcctatg
ctcgcttttatgaaagccttttcacttgtttagtacacaaggtccaaagg
tcaacaatagtaggagaataattaggggtcctaacaaggtgaatatgaga
gtagttaaccaaggggaggagttaagatttgaaccagccctgagtctgtt
ctcttccacttggctagcccttctctcaccttggccatggaattcttaac
taacccagaatggcctgcagtatgtgcttcccgatgtttcagacctccca
gtagcacagaaaaagtgggtggctcacacacactgatgggcctgctactg
gttcctcacatcttgcgggcactcgtttatgggggtttctctcaggacac
tcctcaacttcgggtgtccgcaccctaagccccaccctccaaggtcactt
ctgagacacagtttagattcacaagtccctcttcccccatcccccacatt
caggtaatccctccccctgtgtctctagggtagagatatcccaggagtca
aggcctaccgctacgtacaggcaggtactgctaccgtaaaggcaggtgtt
cctctgtagtggaccaagctacaccccccccaaaaaaaaaacaacaaaca
aacaaaaaaagcggcagaaagcacttgctaagtcactttggtagggtgtg
agagtgctaagctcctctcagaggaagatacaccatagccatctcttggt
ttctctggccttcagaagtgtgggtc

gaattctagttttataagattagtttataatgaatcatatctagaattac
tgttttaaaatgcagtgatttttttttcagcttcattaagcagtatttca
tatttttttctttccctcagtgaactaattgtgtattctgaaccactgag
atatcttaaactttttcaggtagacattaaattttcctgacttctcaaac
aaggaataattatcacaatctaacttgttttatggttgaagatgatcatt
tcagacagtaattattcttcatctatcatagtattctaggtgtgttttaa
acttttgatgctttctcatagtcactaccatgtaatgctctgcttttatc
atgagaaatgcttatgaatagaaaatactttaaagtttgttttcctatct
ttgtcctttgcttttgttccaatttgatcttatttactgacctcttgtca
caaattctttttcagtataacagtttttgcaggtagtatttgaaacttgc
ttctctgctttgtcagtaaaattatctgattctgtcttatctatgatagt
aatgccttaggcctgttttctactgctctctaatggatgtgctgtgttct
ttcagctttttttcatatagataaatttcaaaggtagatttctatagagc
tattttaaattttgatgtttctctaatagccttacctcttactcatatac
tccaaatcagcttcataaaaccatcctctttttttgaggagaggggtcct
aggctaatatatcgtaaccaaatactttactactgctgttaagttatcct
tctagcttctcccttctccctttatttactctcagacgatcatgaagtct
gggctactcttttgggttttggttcgctccctttttcttttgcttttctg
cttccattcctttcatctcagctttgactcattcccaaccagtgaatata
accatttttttctgtgcataactttactttagtctgtactattacattgt
tgcaagtgatattcttgtgctttatcacagcattcccattgttatggaaa
ctgatttcaagttttgtgggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_18010391_18010936
seq2: B6Ng01-222J07.b_533_1071 (reverse)

seq1  ACCCACACTTCTGAAAGGCCAGAGAAACCATGAGATGGCTATGGTGTATC  50
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  ACCCACACTTCTG-AAGGCCAGAGAAACCAAGAGATGGCTATGGTGTATC  49

seq1  TTCCTTCTGGAGAGGAGCCTTAGCACTCTCCACAACCCTACCAAAGTGAC  100
      |||| ||| |||||||| ||||||||||| ||| ||||||||||||||||
seq2  TTCC-TCT-GAGAGGAG-CTTAGCACTCT-CAC-ACCCTACCAAAGTGAC  94

seq1  TTAGCAAGTGCTTTCTGCCGCTTTTTTTTGTTTGTTTGTTTGTTTTTTTT  150
      ||||||||||||||||||||| ||||||||||||||||||  ||||||||
seq2  TTAGCAAGTGCTTTCTGCCGC-TTTTTTTGTTTGTTTGTTGTTTTTTTTT  143

seq1  TTGGGGGGGTGTAGCTTGGTCCACTACAGAGGAACACCTGCCTTTACGGT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGTGTAGCTTGGTCCACTACAGAGGAACACCTGCCTTTACGGT  193

seq1  AGCAGTACCTGCCTGTACGTAGCGGTAGGCCTTGACTCCTGGGATATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACCTGCCTGTACGTAGCGGTAGGCCTTGACTCCTGGGATATCTC  243

seq1  TACCCTAGAGACACAGGGGGAGGGATTACCTGAATGTGGGGGATGGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAGAGACACAGGGGGAGGGATTACCTGAATGTGGGGGATGGGGGA  293

seq1  AGAGGGACTTGTGAATCTAAACTGTGTCTCAGAAGTGACCTTGGAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACTTGTGAATCTAAACTGTGTCTCAGAAGTGACCTTGGAGGGTG  343

seq1  GGGCTTAGGGTGCGGACACCCGAAGTTGAGGAGTGTCCTGAGAGAAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAGGGTGCGGACACCCGAAGTTGAGGAGTGTCCTGAGAGAAACCC  393

seq1  CCATAAACGAGTGCCCGCAAGATGTGAGGAACCAGTAGCAGGCCCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACGAGTGCCCGCAAGATGTGAGGAACCAGTAGCAGGCCCATCAG  443

seq1  TGTGTGTGAGCCACCCACTTTTTCTGTGCTACTGGGAGGTCTGAAACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGAGCCACCCACTTTTTCTGTGCTACTGGGAGGTCTGAAACATC  493

seq1  GGGAAGCACATACTGCAGGCCATTCTGGGTTAGTTAAGAATTCCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCACATACTGCAGGCCATTCTGGGTTAGTTAAGAATTCCAT  539


seq1: chrX_17820757_17821836
seq2: B6Ng01-222J07.g_67_1141

seq1  GAATTCTAGTTTTATAAGATTAGTTTATAATGAATCATATCTAGAATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTTTATAAGATTAGTTTATAATGAATCATATCTAGAATTAC  50

seq1  TGTTTTAAAATGCAGTGATTTTTTTTTCAGCTTCATTAAGCAGTATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAATGCAGTGATTTTTTTTTCAGCTTCATTAAGCAGTATTTCA  100

seq1  TATTTTTTTCTTTCCCTCAGTGAACTAATTGTGTATTCTGAACCACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTCTTTCCCTCAGTGAACTAATTGTGTATTCTGAACCACTGAG  150

seq1  ATATCTTAAACTTTTTCAGGTAGACATTAAATTTTCCTGACTTCTCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAAACTTTTTCAGGTAGACATTAAATTTTCCTGACTTCTCAAAC  200

seq1  AAGGAATAATTATCACAATCTAACTTGTTTTATGGTTGAAGATGATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAATTATCACAATCTAACTTGTTTTATGGTTGAAGATGATCATT  250

seq1  TCAGACAGTAATTATTCTTCATCTATCATAGTATTCTAGGTGTGTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGTAATTATTCTTCATCTATCATAGTATTCTAGGTGTGTTTTAA  300

seq1  ACTTTTGATGCTTTCTCATAGTCACTACCATGTAATGCTCTGCTTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATGCTTTCTCATAGTCACTACCATGTAATGCTCTGCTTTTATC  350

seq1  ATGAGAAATGCTTATGAATAGAAAATACTTTAAAGTTTGTTTTCCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATGCTTATGAATAGAAAATACTTTAAAGTTTGTTTTCCTATCT  400

seq1  TTGTCCTTTGCTTTTGTTCCAATTTGATCTTATTTACTGACCTCTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTGCTTTTGTTCCAATTTGATCTTATTTACTGACCTCTTGTCA  450

seq1  CAAATTCTTTTTCAGTATAACAGTTTTTGCAGGTAGTATTTGAAACTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTTTTTCAGTATAACAGTTTTTGCAGGTAGTATTTGAAACTTGC  500

seq1  TTCTCTGCTTTGTCAGTAAAATTATCTGATTCTGTCTTATCTATGATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTTTGTCAGTAAAATTATCTGATTCTGTCTTATCTATGATAGT  550

seq1  AATGCCTTAGGCCTGTTTTCTACTGCTCTCTAATGGATGTGCTGTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTAGGCCTGTTTTCTACTGCTCTCTAATGGATGTGCTGTGTTCT  600

seq1  TTCAGCTTTTTTTCATATAGATAAATTTCAAAGGTAGATTTCTATAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTTTTTCATATAGATAAATTTCAAAGGTAGATTTCTATAGAGC  650

seq1  TATTTTAAATTTTGATGTTTCTCTAATAGCCTTACCTCTTACTCATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATTTTGATGTTTCTCTAATAGCCTTACCTCTTACTCATATAC  700

seq1  TCCAAATCAGCTTCATAAAACCATCCTCTTTTTTTGAGGAGAGGGGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCAGCTTCATAAAACCATCCTCTTTTTTTGAGGAGAGGGGTCCT  750

seq1  AGGCTAATATATCGTAACCAAATACTTTACTACTGCTGTTAAGTTATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATATATCGTAACCAAATACTTTACTACTGCTGTTAAGTTATCCT  800

seq1  TCTAGCTTCTCCCTTCTCCCTTTATTTACTCTCAGACGATCATGAAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTCTCCCTTCTCCCTTTATTTACTCTCAGACGATCATGAAGTCT  850

seq1  GGGCTACTCTTTTGGTTTTTGGTTCGCTCCCTTTTTCTTTTGCTTTTTCT  900
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GGGCTACTCTTTTGGGTTTTGGTTCGCTCCCTTTTTCTTTTGC-TTTTCT  899

seq1  GCTTCCATTCCTTTCATCTCAGCTTTGACTCATTCCAAACCAGTGAATAT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTCCATTCCTTTCATCTCAGCTTTGACTCATTCCCAACCAGTGAATAT  949

seq1  AACCATTTTTTTCTGTGCATAACTTTACTTTTAGTCTGTACTA-TACATT  999
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  AACCATTTTTTTCTGTGCATAACTTTAC-TTTAGTCTGTACTATTACATT  998

seq1  GTTGGCAGGTGAATATTCTTGTGCTTTTATCACAGCCATTCCCATTGTTA  1049
      ||| ||| ||| |||||||||||| |||||||||| ||||||||||||||
seq2  GTT-GCAAGTG-ATATTCTTGTGC-TTTATCACAG-CATTCCCATTGTTA  1044

seq1  TGGAAACTGATTTCAAAGTTTTGT-GGTGGGG  1080
      |||||||||||||| ||||||||| |||||||
seq2  TGGAAACTGATTTC-AAGTTTTGTGGGTGGGG  1075


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