BAC Information

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BAC

Clone NameB6Ng01-225M17
Chromosome3 (Build37)X (Build37)
Map Location 39,922,263 - 39,922,481152,464,512 - 152,464,826
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225M17.bB6Ng01-225M17.g
ACCGA039897GA039898
length4031,111
definitionB6Ng01-225M17.b B6Ng01-225M17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,922,263 - 39,922,481)(152,464,512 - 152,464,826)
sequence
acttggaatactctgaccaacaacctaaaaagtagtttctcatagttgcc
actgaggtgattttatttggtggtctatgcctttcatgagaagcagtgtt
acatgtgatatgatatatatatataatttgtgtgtgtatgtatatatgta
tatatatatatatatatatatatatatatacacacacacacaatatatat
atatgtgtatgtgtgtgtgtgtgtccctcgcgagagagagacacacccac
aaaaaaaaacacgcgagagagcagagagaaaaactatttttttgtgtgtg
tgagagagtgtgatgagtgtagcgcgcgcgccctctctctcgagagagat
atgcgcgcgcgcgcacatataagagagagatatacacacacacacacaca
cac
gaattctgactaggccatcttctgctgcatatgtagctggagccatgagt
aacaccatgtgtgctctttggttggtggtttagtacctgggatctctggg
gggtactggatagttcatattgtagttcctcctatggggctgctaaccca
ttgagaaccttgggtcctttctctagctccttccttagggatactattat
cagtcaaatggctgactatgattatctacctctgtatttgtgagccactg
gcagagcctctcaggagagagctttatcaggctcctgtcagcaagcactt
gttagcatcctctgttagcatccagtgtctggtgaaagttccacaacgtg
aggcctcccccatgttctgactcaggagaggtgacaccccaaatcactca
tgagaaacggtcttgatgtaaactgcaagaggtttattcaggaaagatca
gtgcactggggatgactcagatcccaagaaagggtaaaggagtcgacaac
aagctcaaggggtaagggatttataaagacacaaaaccctcaaacacttg
gcattgggctatagaaaggcaaaaaccataaacacctggcaaaaactgca
aacacctggcattctggaacaatggggctattttgaacacaggtctaggg
gcttaaataattttttactctctgtcaggatcttttattcccccacttct
tctagttactacttctaatcttagaactacacttcaatctcttcttcaaa
gttctgcagaaactggtactgttgtatcagcaccaacaactggactgcac
taatcctttctcttactaaggtcattaacctattaagaatcagtgggcag
tgccagcagaacagggacaaaggatcccagcccaaccagaggctgggatc
tgttccagtctgggccaccccctgccatcttcccttctgagcccagtgga
ggccctaaaggctccagagtgctctctacactgcaggaccttcggatcac
ctatgtatcactgcctgagtgaatgcacatcagctccaaagaatttgcag
agagttctgtgcagcaggacatgtaccaaggcaccccgcagacgagctgg
gatccattcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39922263_39922481
seq2: B6Ng01-225M17.b_153_456 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTATATGTATGT-ATGTATGTATG--------  41
      |||||||||||||||||||||||| | | |  | |||||  |        
seq2  GTGTGTGTGTGTGTGTGTGTATATCTCTCTCTTATATGTGCGCGCGCGCG  50

seq1  --TATGTATCTGTATGTA----------TCTGTA-TCTCGTCCCCCTCTC  78
        ||| | |||  |   |           |  ||  ||| || | |||||
seq2  CATATCTCTCTCGAGAGAGAGGGCGCGCGCGCTACACTCATCACACTCTC  100

seq1  ------------------------TCTCTATG----------------TA  88
                              ||||| ||                | 
seq2  TCACACACACAAAAAAATAGTTTTTCTCTCTGCTCTCTCGCGTGTTTTTT  150

seq1  TGTGTGTGTGTGTACACACACACAC-----ACACACACACACACACACAC  133
      | |||| |||||| | | | | | |     ||||||||||||||| ||||
seq2  TTTGTGGGTGTGT-CTCTCTCTCGCGAGGGACACACACACACACATACAC  199

seq1  ACACACACATA-------------CATATATATATATATATACATATATA  170
      | | | | |||              ||||||||||||||||| |||||||
seq2  ATATATATATATTGTGTGTGTGTGTATATATATATATATATATATATATA  249

seq1  TATATATATATATACATATATATA-----TATATATATATAT-ATATCAC  214
      |||||| ||||||||||| | | |     ||||||||||||| |||||||
seq2  TATATACATATATACATACACACACAAATTATATATATATATCATATCAC  299

seq1  ATGTA  219
      |||||
seq2  ATGTA  304

seq1: chrX_152464512_152464826
seq2: B6Ng01-225M17.g_1011_1179

seq1  CCAGTGGAGGCCACTAAGGGCTCCAGAGTGCTCTCCACGCTGCAGGCAGG  50
      |||||||||||| |||| ||||||||||||||||| || ||    |||||
seq2  CCAGTGGAGGCC-CTAAAGGCTCCAGAGTGCTCTCTACACT----GCAGG  45

seq1  ACCTCAGGATCACCTCGGGATCACAG-GTGAGTGGA-ACACAACACCAGC  98
      ||||  |||||||||  | ||||| |  |||||| |  |||| || |  |
seq2  ACCTTCGGATCACCTATGTATCACTGCCTGAGTGAATGCACATCAGCTCC  95

seq1  ATGAAGAATCATG--GAGGGTCTTGTGCCAGCAGGAACAGGGACAAAGGA  146
      |  ||||||  ||  ||| ||  |||| ||||||| ||| | || |||| 
seq2  A--AAGAAT-TTGCAGAGAGTTCTGTG-CAGCAGG-ACATGTACCAAGGC  140

seq1  ACCCTGCCCTACCAGA--GGCTGGAATCCATTCCAGTTGGGGCCACCCCT  194
      |||| |      ||||   ||||| ||||||| |||              
seq2  ACCCCG------CAGACGAGCTGGGATCCATT-CAG--------------  169

seq1  GCCATCTTCCTTTCTGAGCCCAGCAGAGGCTGCTAAGGGCTCCCAAGTGC  244
                                                        
seq2  --------------------------------------------------  169

seq1  TCTCCACTTTGCAGGACCTTGGGATCACCACCTCAGGATCTCCTCCTGAC  294
                                                        
seq2  --------------------------------------------------  169

seq1  CAGAGGCTGGGATCCATTCAG  315
                           
seq2  ---------------------  169