BAC Information

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BAC

Clone NameB6Ng01-226P08
ChromosomeX (Build37)
Map Location 49,493,311 - 49,624,808
singlet/doubletdoublet
Overlap geneGpc4
Upstream geneMbnl3, LOC665866, LOC385356, Hs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495
Downstream geneGpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226P08.bB6Ng01-226P08.g
ACCGA040754GA040755
length1,1251,119
definitionB6Ng01-226P08.b B6Ng01-226P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,623,700 - 49,624,808)(49,493,311 - 49,494,424)
sequence
gaattctctcagctctctcttgctctcttaggctttctctctgtcatgtc
tctcttcaaagaccacagcatgacagcgctaaccgatgccctgcatttgg
gttgtaaaagtggtcgtcaggaagcttatgctttatcagaagcatctcta
agccgcagcctcagttggcttgttcaacagacacttgcagaaagctcgag
ttttgcgaacccattgagtaactcataaggcaccagatactagagagagt
ggcaggggcaagagcccttgatcactaccctcatggagctgagctcccag
cactcgtgctagctctaacagtgtccttccatgaatcgtagacccagcac
tctgacttcactccatttttgttcacagacaacatcttaagcacgcatgg
cacttactattttactttgattgccttcctgctgccagagaattctggga
ataaccaatttgccatttttctttttttatcatgtatgtaatgctctgta
cgtggcttttctaccagctactgtcaatacagagagccagggtgaggtgc
agggagaggttgggcagttctctttgattctgggaaatagttccccgcgg
gagctccagcttcagtcccagagtagaaggtcaccaggggaagcagaagg
tactatttatcacagcgtagcttcccatctaagtcctcactcctgctgtc
cccaacattcttctgtaagtctcctgccgagcataactttccaatacccg
cttgtcgttgtccctttcagaaatgcctgcaaatgcaagttagagatgtg
ggacttgcctttttctaaacaggttctggttttgtctcgttgctggtttt
attttctgacataacgtgcacggttcacaatgggttggtgagatacaaag
accaagaaactacctttgttttggaggtagtttgaggatgaagctgctct
tgcttcttgaatttgaggtttgtgagaacctttggtccctggatttaatg
aaaatggaacactggacagtgttcaattccttagatttggcagcctgaat
tcaactagcaaacaccgagaccagaaagaaggcttttaccccaggttgtc
tatcttaaaaacttttcctggtcat
gaattcatgctagatgaaaacttgagaaccagatgatccataaccatttt
cctcaacactttcatgtggtcacaatagcttggttcttcttgagacaagt
ccttttcctggactcttctatgctagcaacaaccctgaatgtttccagta
aacatacacgtttactgtacaaacagtgctgactgtaagaagtagatgag
gagttgtagtgtgcacttaattggggagcacaaatggccccagaagtcca
tacttttgagacttcacaggaaaaagaccttttctctacccaccagtgtt
aggtctttgcctgctgtggttttagtccatttgatgtagagggaaagaca
tgcttcaaagcctaatggccctgatgttctaagatcaaagtacaaaagcc
aatgatgctttggtcacacaaaggtactccttgttactattttttttctt
ctaaatgggaaagaaaatgagttttcagggggtaggggcacaaaaaaaaa
gaaaatgagtttttaaatcaagttaataaagatttacttagtccctgacc
ttatatgcaaggcatgatgagggactgtaaaactgaataagacataatgc
ctgaattcaaggagctctttcagaggcaattaaaaaaataaaaagtccct
acccaccccactttttgaaccagggatctgttgtagcccaggctagcttg
aactcactttgtagtcaagaatcaccttgaactcccgaccttctgactca
tcctcctcagtgctgggaaacacaggtttcagccagcacacctgacacaa
cagccaattttaaaataagataaaatgtattgccttgaggactagggcta
tgtccaccttcctcatttttaaatcttagtaaattagcatttaggcgggg
cctgtagtggatacctaatgtattccttaccacagaaatgatgaacaagt
cactaatcaaatcatttactcttctcctaagaaaattgataatgagccaa
aagactttgctacccatgggtatgtgaacaaaacattatgaagagatctt
tttgaccagcagaacatctagggatgaattgaagcacttaccttagcgtg
tacacttactcctggattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_49623700_49624808
seq2: B6Ng01-226P08.b_48_1172 (reverse)

seq1  ATGA-CAGGGAAAGTTTTT-AGAT-GACAA-CTGGGTTAAAGCCCTTC-T  45
      |||| |||| ||||||||| |||| ||||| ||||| ||||  ||||| |
seq2  ATGACCAGGAAAAGTTTTTAAGATAGACAACCTGGGGTAAAAGCCTTCTT  50

seq1  TCTGGTCT--GTTGTTGCTAG-TGAA-TCAGGCTG-CAAATCTAAGGAA-  89
      ||||||||  ||  ||||||| |||| |||||||| ||||||||||||| 
seq2  TCTGGTCTCGGTGTTTGCTAGTTGAATTCAGGCTGCCAAATCTAAGGAAT  100

seq1  TGAACACTCT-CAGTGTTCCATTTTCA-TAAATCCA-GGACCAAAGGTTC  136
      |||||||| | |||||||||||||||| |||||||| |||||||||||||
seq2  TGAACACTGTCCAGTGTTCCATTTTCATTAAATCCAGGGACCAAAGGTTC  150

seq1  TCACAAACCTCAAATTC-AGAAGCAAGAGCAGCTTCATCCTCAAACTACC  185
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCACAAACCTCAAATTCAAGAAGCAAGAGCAGCTTCATCCTCAAACTACC  200

seq1  TCCAAAACAAAGGTAGTTTCTTGGTCTTTGTATCTCACCAA-CCATTGTG  234
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCAAAACAAAGGTAGTTTCTTGGTCTTTGTATCTCACCAACCCATTGTG  250

seq1  AACCGTGCACGTTATGTCAGAAAATAAAACCAGCAACGAGACAAAACCAG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGCACGTTATGTCAGAAAATAAAACCAGCAACGAGACAAAACCAG  300

seq1  AACCTGTTTAGAAAAAGGCAAGTCCCACATCTCTAACTTGCATTTGCAGG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTTTAGAAAAAGGCAAGTCCCACATCTCTAACTTGCATTTGCAGG  350

seq1  CATTTCTGAAAGGGACAACGACAAGCGGGTATTGGAAAGTTATGCTCGGC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGAAAGGGACAACGACAAGCGGGTATTGGAAAGTTATGCTCGGC  400

seq1  AGGAGACTTACAGAAGAATGTTGGGGACAGCAGGAGTGAGGACTTAGATG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTTACAGAAGAATGTTGGGGACAGCAGGAGTGAGGACTTAGATG  450

seq1  GGAAGCTACGCTGTGATAAATAGTACCTTCTGCTTCCCCTGGTGACCTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTACGCTGTGATAAATAGTACCTTCTGCTTCCCCTGGTGACCTTC  500

seq1  TACTCTGGGACTGAAGCTGGAGCTCCCGCGGGGAACTATTTCCCAGAATC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGGGACTGAAGCTGGAGCTCCCGCGGGGAACTATTTCCCAGAATC  550

seq1  AAAGAGAACTGCCCAACCTCTCCCTGCACCTCACCCTGGCTCTCTGTATT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACTGCCCAACCTCTCCCTGCACCTCACCCTGGCTCTCTGTATT  600

seq1  GACAGTAGCTGGTAGAAAAGCCACGTACAGAGCATTACATACATGATAAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGCTGGTAGAAAAGCCACGTACAGAGCATTACATACATGATAAA  650

seq1  AAAAGAAAAATGGCAAATTGGTTATTCCCAGAATTCTCTGGCAGCAGGAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATGGCAAATTGGTTATTCCCAGAATTCTCTGGCAGCAGGAA  700

seq1  GGCAATCAAAGTAAAATAGTAAGTGCCATGCGTGCTTAAGATGTTGTCTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAAAGTAAAATAGTAAGTGCCATGCGTGCTTAAGATGTTGTCTG  750

seq1  TGAACAAAAATGGAGTGAAGTCAGAGTGCTGGGTCTACGATTCATGGAAG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAATGGAGTGAAGTCAGAGTGCTGGGTCTACGATTCATGGAAG  800

seq1  GACACTGTTAGAGCTAGCACGAGTGCTGGGAGCTCAGCTCCATGAGGGTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTAGAGCTAGCACGAGTGCTGGGAGCTCAGCTCCATGAGGGTA  850

seq1  GTGATCAAGGGCTCTTGCCCCTGCCACTCTCTCTAGTATCTGGTGCCTTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAAGGGCTCTTGCCCCTGCCACTCTCTCTAGTATCTGGTGCCTTA  900

seq1  TGAGTTACTCAATGGGTTCGCAAAACTCGAGCTTTCTGCAAGTGTCTGTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACTCAATGGGTTCGCAAAACTCGAGCTTTCTGCAAGTGTCTGTT  950

seq1  GAACAAGCCAACTGAGGCTGCGGCTTAGAGATGCTTCTGATAAAGCATAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCCAACTGAGGCTGCGGCTTAGAGATGCTTCTGATAAAGCATAA  1000

seq1  GCTTCCTGACGACCACTTTTACAACCCAAATGCAGGGCATCGGTTAGCGC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGACGACCACTTTTACAACCCAAATGCAGGGCATCGGTTAGCGC  1050

seq1  TGTCATGCTGTGGTCTTTGAAGAGAGACATGACAGAGAGAAAGCCTAAGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCTGTGGTCTTTGAAGAGAGACATGACAGAGAGAAAGCCTAAGA  1100

seq1  GAGCAAGAGAGAGCTGAGAGAATTC  1109
      |||||||||||||||||||||||||
seq2  GAGCAAGAGAGAGCTGAGAGAATTC  1125

seq1: chrX_49493311_49494424
seq2: B6Ng01-226P08.g_67_1185

seq1  GAATTCATGCTAGATGAAAACTTGAGAACCAGATGATCCATAACCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTAGATGAAAACTTGAGAACCAGATGATCCATAACCATTTT  50

seq1  CCTCAACACTTTCATGTGGTCACAATAGCTTGGTTCTTCTTGAGACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACACTTTCATGTGGTCACAATAGCTTGGTTCTTCTTGAGACAAGT  100

seq1  CCTTTTCCTGGACTCTTCTATGCTAGCAACAACCCTGAATGTTTCCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTGGACTCTTCTATGCTAGCAACAACCCTGAATGTTTCCAGTA  150

seq1  AACATACACGTTTACTGTACAAACAGTGCTGACTGTAAGAAGTAGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACACGTTTACTGTACAAACAGTGCTGACTGTAAGAAGTAGATGAG  200

seq1  GAGTTGTAGTGTGCACTTAATTGGGGAGCACAAATGGCCCCAGAAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTAGTGTGCACTTAATTGGGGAGCACAAATGGCCCCAGAAGTCCA  250

seq1  TACTTTTGAGACTTCACAGGAAAAAGACCTTTTCTCTACCCACCAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGAGACTTCACAGGAAAAAGACCTTTTCTCTACCCACCAGTGTT  300

seq1  AGGTCTTTGCCTGCTGTGGTTTTAGTCCATTTGATGTAGAGGGAAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTGCCTGCTGTGGTTTTAGTCCATTTGATGTAGAGGGAAAGACA  350

seq1  TGCTTCAAAGCCTAATGGCCCTGATGTTCTAAGATCAAAGTACAAAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAAGCCTAATGGCCCTGATGTTCTAAGATCAAAGTACAAAAGCC  400

seq1  AATGATGCTTTGGTCACACAAAGGTACTCCTTGTTACTATTTTTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGCTTTGGTCACACAAAGGTACTCCTTGTTACTATTTTTTTTCTT  450

seq1  CTAAATGGGAAAGAAAATGAGTTTTCAGGGGGTAGGGGCACAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGGAAAGAAAATGAGTTTTCAGGGGGTAGGGGCACAAAAAAAAA  500

seq1  GAAAATGAGTTTTTAAATCAAGTTAATAAAGATTTACTTAGTCCCTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAGTTTTTAAATCAAGTTAATAAAGATTTACTTAGTCCCTGACC  550

seq1  TTATATGCAAGGCATGATGAGGGACTGTAAAACTGAATAAGACATAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCAAGGCATGATGAGGGACTGTAAAACTGAATAAGACATAATGC  600

seq1  CTGAATTCAAGGAGCTCTTTCAGAGGCAATTAAAAAAATAAAAAGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCAAGGAGCTCTTTCAGAGGCAATTAAAAAAATAAAAAGTCCCT  650

seq1  ACCCACCCCACTTTTTGAACCAGGGATCTGTTGTAGCCCAGGCTAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCACTTTTTGAACCAGGGATCTGTTGTAGCCCAGGCTAGCTTG  700

seq1  AACTCACTTTGTAGTCAAGAATCACCTTGAACTCCCGACCTTCTGACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTTTGTAGTCAAGAATCACCTTGAACTCCCGACCTTCTGACTCA  750

seq1  TCCTCCTCAGTGCTGGG-AACACAGGTTTCAGCCAGCACACCTGACACAA  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCTCCTCAGTGCTGGGAAACACAGGTTTCAGCCAGCACACCTGACACAA  800

seq1  CAGCCAATTTTAAAATAAGATAAAATGTATTGCCTTGAGGACTAGGGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATTTTAAAATAAGATAAAATGTATTGCCTTGAGGACTAGGGCTA  850

seq1  TGTCCACCTTCCTCATTTTTAAATCTTAGT-AATTAGCATTTAGGCGGGG  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTCCACCTTCCTCATTTTTAAATCTTAGTAAATTAGCATTTAGGCGGGG  900

seq1  CCTGTAGTGGATACCTAATGTATT-CTTACACAAGAAATGAATGAACAAG  947
      |||||||||||||||||||||||| |||||   ||||||| |||||||||
seq2  CCTGTAGTGGATACCTAATGTATTCCTTACCACAGAAATG-ATGAACAAG  949

seq1  TCACTAATCAAATCATTTACTC-TCTCCT-AGAAAATTGAT-ATGAGGCA  994
      |||||||||||||||||||||| |||||| ||||||||||| ||||| ||
seq2  TCACTAATCAAATCATTTACTCTTCTCCTAAGAAAATTGATAATGAGCCA  999

seq1  AAAGACTTTGCTAACCATGGGTATGTGAAC-AAACA-TATG-AGAGATTC  1041
      ||||||||||||| |||||||||||||||| ||||| |||| ||||| ||
seq2  AAAGACTTTGCTACCCATGGGTATGTGAACAAAACATTATGAAGAGA-TC  1048

seq1  TTTTTGACCAGCAGAACCATCTAGGGATGAAATGAAGCACTTACC-TAGC  1090
      |||||||||||||||| |||||||||||||| ||||||||||||| ||||
seq2  TTTTTGACCAGCAGAA-CATCTAGGGATGAATTGAAGCACTTACCTTAGC  1097

seq1  GTGTACAACTAACTCCCTGGATTC  1114
      |||||| ||| ||| |||||||||
seq2  GTGTAC-ACTTACT-CCTGGATTC  1119