BAC Information

Click to search

BAC

Clone NameB6Ng01-227D13
ChromosomeX (Build37)16 (Build37)
Map Location 158,741,017 - 158,741,4883,495,716 - 3,496,701
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrkaca-ps1, Rai2, Gm47, Nhs
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227D13.bB6Ng01-227D13.g
ACCGA040948GA040949
length1,0011,130
definitionB6Ng01-227D13.b B6Ng01-227D13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(158,741,017 - 158,741,488)(3,495,716 - 3,496,701)
sequence
gaattcatagccactatgcctcaagatctccatgcaaagatctaggtagg
aaacttgtatttcccagcctccagattaggattacaggtgaaccttccaa
ttgacaatttccccattttttattattagatattttcttcatttacattt
caaatgctctccggaaagttccctataccctctccatgccttgctcccca
gcccatccacttccactttctgaccctggcattcccctgtactggggcat
ataatcttctcaagaccaagagcctctcctcccaatgatggctgactagg
ccatcttctgctacatatgcagctagagacacgagctctggggtactgct
tagttcatgttgatgttcctcttacaggattgcagatcccttcagctcct
tggatactttctctagctcctccattgggggccctgcgttccatccaata
gatgactgtgagcatccacttctgtatttgccaggcactggcatagcctc
acaagagacatatatatcagcaaaatcttgctggcatatgcaatagtgtc
tggatttgatggctgtttgatggctgtttatgggatggattcccaggtgg
ggcagtctctggatggatactaaagattcttattgcctaaatttgactat
atttgtagcttggtctacatagtaagatccaggactgtgggattctatgg
agaccctgtctaggagagagagagagagagagagagagagagagagagag
agagagagagaaagagagagagatttgatatcaatatatgcgaatatcac
attattgatagtgcaaataggaaaatttatttgaagttacacaaaaacaa
ttctactcatttgatctgatgttttcatcttcctcatgaatgtgtgtggc
atacaatatgaaagcaggaaatggttaattaaaagggaaattacctttct
acaatccagtatccagcatctagcatgccggtcaataaacctctttaatc
c

gaattctatactgaggaaactcaaatggctgagaaacacctaaagaaatg
ttcaacatccttagtcatcagggaaatacaaatcgaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaacactaagctgacagc
agatgctggtgaggatgtggagaaaaatgtgggattgcaatctggtacaa
ccactctggaaatcagtttggtggttcctcagaaaattggagatagtact
acctgaggacccagctataccactcctgagcatgtatccagaagattctc
caacatgtaataaggacgcatgttccactgtgttcatagcagccatattt
ataatagccagaagctgcaagtaacccagatgtccttcaacagaggaatg
gatacagaaaatgtggtactacttagctattaaaaacactgactacatga
aatttgtggacaaatggatggatctagaaaatatcatcctgtgaggtaac
tcagtcacaaaagaacacacttgatatgtactcactgataagtggatatt
aggcaaaggacatgaactatccatgattcaactcatggaccacatgaagc
tgaagaggaaagaacaccaaagagtggatactttagcactacttagactt
tgacaaatgatttaattcaagagtaatgtgaaaaatgccaagagttttga
tggccaaaattgcacaggtccatgcaggaggaatgacaaatggctttaga
actcatggaagatggcccactggttagcacaaccactatgggttcacctt
gtttaagttaaggtcccatggactgtgtcctaaagatgtcatgctgttat
ctgtttctactctgcttactgtcaccacttccctcttaatctaagaaacc
tatgaaaattgcaaatggttttgccagtcctcactatgcagtgtcttggc
actcacaataataatatacatatgtagcagggacttccttgactgacaga
ctttctctggaagaggtgcatctacttctggtgaggttgctgtccagtag
ggggaatactgagtgctgggtaatggagcacatttcatatgttaaatgga
gcaggcatgagatgaagaatttctgaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158741017_158741488
seq2: B6Ng01-227D13.b_161_579 (reverse)

seq1  CCAGCAAGATTTTGCTGAAAGGACCCAGATAGAGCAGTCTCTTGGGAGGC  50
      ||||||||||||||||           |||| |   |||||||| |||||
seq2  CCAGCAAGATTTTGCT-----------GATATATATGTCTCTTGTGAGGC  39

seq1  TATGCCAGTGCCTGGAAAACACAGAAGTGGATGTTCACAGTCATCTATTG  100
      ||||||||||||||| ||| ||||||||||||| ||||||||||||||||
seq2  TATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTG  89

seq1  GATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAG  150
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GATGGAACGCAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAG  139

seq1  CTGAAGGGGTCTGCAACCCTATAGGTGGAACATCAATATGAACTAACCAG  200
      |||||||| ||||||| ||| || | |||||||||| ||||||||| |||
seq2  CTGAAGGGATCTGCAATCCTGTAAGAGGAACATCAACATGAACTAAGCAG  189

seq1  TACCCCCCAGAGCT-GTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCT  249
      ||  |||||||||| |||||||||||||||||||||||||||||||||||
seq2  TA--CCCCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCT  237

seq1  AGTCGGCCATCATTGGAAAGAGAGGCCCCTTGGTCTTGTGAAGATTATAT  299
      |||| ||||||||||| | |||||| | |||||||||| |||||||||||
seq2  AGTCAGCCATCATTGGGAGGAGAGG-CTCTTGGTCTTGAGAAGATTATAT  286

seq1  GCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTGAGTGGGTAG  349
      ||| |||||||||||||  |||||| ||  |||||| ||||  ||||  |
seq2  GCCCCAGTACAGGGGAATGCCAGGGTCAGAAAGTGGAAGTGGATGGGCTG  336

seq1  GGGAGC-AGGAAGGGGGAGGGTATAGGGAACTTTTGGGATAGCATTTGAA  398
      |||||| ||| | || ||||||||||||||||||  ||| ||||||||||
seq2  GGGAGCAAGGCATGGAGAGGGTATAGGGAACTTTCCGGAGAGCATTTGAA  386

seq1  ATGTAAATGAAGTAAATACCTAATAAAAATTGGAAAAAAAGAAATGTAAA  448
      |||||||||||| ||||| ||||||| ||    ||||             
seq2  ATGTAAATGAAGAAAATATCTAATAATAA----AAAA-------------  419

seq1  TGAAGAAAATATCTAATTAAAAAA  472
                              
seq2  ------------------------  419


seq1: chr16_3495716_3496701
seq2: B6Ng01-227D13.g_214_1194

seq1  CAGATGCTGGTGAGGATGTGGAGAAAAATGTGGGATTGCAATCTGGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTGGTGAGGATGTGGAGAAAAATGTGGGATTGCAATCTGGTACA  50

seq1  ACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTGGAGATAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTGGAGATAGTAC  100

seq1  TACCTGAGGACCCAGCTATACCACTCCTGAGCATGTATCCAGAAGATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGGACCCAGCTATACCACTCCTGAGCATGTATCCAGAAGATTCT  150

seq1  CCAACATGTAATAAGGACGCATGTTCCACTGTGTTCATAGCAGCCATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGTAATAAGGACGCATGTTCCACTGTGTTCATAGCAGCCATATT  200

seq1  TATAATAGCCAGAAGCTGCAAGTAACCCAGATGTCCTTCAACAGAGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAGCCAGAAGCTGCAAGTAACCCAGATGTCCTTCAACAGAGGAAT  250

seq1  GGATACAGAAAATGTGGTACTACTTAGCTATTAAAAACACTGACTACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGAAAATGTGGTACTACTTAGCTATTAAAAACACTGACTACATG  300

seq1  AAATTTGTGGACAAATGGATGGATCTAGAAAATATCATCCTGTGAGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTGGACAAATGGATGGATCTAGAAAATATCATCCTGTGAGGTAA  350

seq1  CTCAGTCACAAAAGAACACACTTGATATGTACTCACTGATAAGTGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCACAAAAGAACACACTTGATATGTACTCACTGATAAGTGGATAT  400

seq1  TAGGCAAAGGACATGAACTATCCATGATTCAACTCATGGACCACATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAGGACATGAACTATCCATGATTCAACTCATGGACCACATGAAG  450

seq1  CTGAAGAGGAAAGAACACCAAAGAGTGGATACTTTAGCACTACTTAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGGAAAGAACACCAAAGAGTGGATACTTTAGCACTACTTAGACT  500

seq1  TTGACAAATGATTTAATTCAAGAGTAATGTGAAAAATGCCAAGAGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGATTTAATTCAAGAGTAATGTGAAAAATGCCAAGAGTTTTG  550

seq1  ATGGCCAAAATTGCACAGGTCCATGCAGGAGGAATGACAAATGGCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAAAATTGCACAGGTCCATGCAGGAGGAATGACAAATGGCTTTAG  600

seq1  AACTCATGGAAGATGGCCCACTGGTTAGCACAACCACTATGGGTTCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGGAAGATGGCCCACTGGTTAGCACAACCACTATGGGTTCACCT  650

seq1  TGTTTAAGTTAAGGTCCCATGGACTGTGTCCTAAAGATGTCATGCTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGTTAAGGTCCCATGGACTGTGTCCTAAAGATGTCATGCTGTTA  700

seq1  TCTGTTTCTACTCTGCTTACTGTCACCACTTCCCTCTTAATCTAAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTACTCTGCTTACTGTCACCACTTCCCTCTTAATCTAAGAAAC  750

seq1  CTATGAAAATTGCAAATGGTTTTGCCAGTCCTCACTATGCAGTGTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAATTGCAAATGGTTTTGCCAGTCCTCACTATGCAGTGTCTTGG  800

seq1  CACTCACAATAATAATATACATATGTAGCAGGGGACTTCCTTGACTGACA  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTCACAATAATAATATACATATGTAGCA-GGGACTTCCTTGACTGACA  849

seq1  GAC-TTCTCTGAGAGAGGGTGCATCTACTCCTGGTGAGGTTTGCTGTCCC  899
      ||| |||||||  ||| |||||||||||| ||||||||| ||||||||| 
seq2  GACTTTCTCTGGAAGA-GGTGCATCTACTTCTGGTGAGG-TTGCTGTCC-  896

seq1  AGGTAGGGGGGATACTGAGTGGCTGGTAATGGGAAGCACCATTTCATATG  949
        |||||||| ||||||||||   ||||||||  |||| |||||||||||
seq2  -AGTAGGGGGAATACTGAGTGCTGGGTAATGG--AGCA-CATTTCATATG  942

seq1  -TAAAT-GAGCAGGGGATGAGATGAAG-ATTTCTGGACTG  986
       ||||| ||||| || ||||||||||| ||||||| ||||
seq2  TTAAATGGAGCA-GGCATGAGATGAAGAATTTCTGAACTG  981


| Home | SequenceCutter | Blast | Download |