BAC Information

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BAC

Clone NameB6Ng01-227H22
ChromosomeX (Build37)8 (Build37)
Map Location 158,204,251 - 158,204,28933,778,231 - 33,779,290
singlet/doubletsingletsinglet
Overlap geneRai2
Upstream geneRs1, Gja6, Scml2, LOC414364, Prkaca-ps1
Downstream geneGm47, Nhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227H22.bB6Ng01-227H22.g
ACCGA041151GA041152
length9651,136
definitionB6Ng01-227H22.b B6Ng01-227H22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(158,204,251 - 158,204,289)(33,778,231 - 33,779,290)
sequence
ggaattcaaatagatccatatttatcatcatgcacaaaactcaagtttaa
gtggattaagtacctcaacataaacttgaatacactaaatctaatacaag
agaaaatggggaataaccttgaatgcatgggcaccggagacaactttctg
aatagaacatcaacagctcaggcactaagatcaacaactgatacgtggga
cctcatggaactgaaaaagtttctgtaaggcaaaagacactgtcaatagg
acaaaatagcagcttacagagtgggaaaaaaatcttcactcacccttcat
ccaacagagggctaacatccaaaacttttaaagaagtcaagaagttaggc
actaacaatccaaataacccaattaaaaatagggtatagaattaaatgga
gaattcttaacagaggactcttaaatggctgagaaacacttaaagaaaat
ttcaaagttcttaggcatcaggaaaacgcaaatcaaaattactctgattc
tcataccagtcagaatggttaagataaaaaactcaagtgacagtacatgc
tgaaaaggatgtgaagaaaggaacacttttccattggtggtgggattgaa
aacttgtacaatcaatctttaaatcaatttggtggcttctcagaaaattg
ggactacttttaccttaagacccagatgatttagtcctgggcatataccc
acaagatgctctaccataccataaggatacttgatcaactatctttctag
cagcaatatctagaaactggagagaatccagatgtccctcaaccaaagaa
tagataatgaaaatgtagaatattattcacagctattaaaaacaaggaca
tcatgacattttcaaacaaatggatggaactagaaaatatcatcctgaat
gaggtaacccagatcccaaaagacacatggtatgtactcacttatcagtg
gatatagtcataaag
gaattcagtaggaattcagtgagaaggttatcaattcaataacattcaaa
tttacttctagtagagatggtgaagctaattaggcattacaaagaacgga
atagctcagggctggtctgcagagtgtttacttgggacaatagccagcct
tacccagacaagggaattcacaatggcctagtgaataggtgggtttacca
tgaaagagttagggaatccccctgagacaggtttcttaactaggcccaaa
gaaacagcataatcaggcatttactagaacccctggtggtgggcttaaca
atagactagcattatacctggctcccttcttagtggcaggtccccacctt
cttttgatgtatacattccttttgtattgtgtcactgtaattcagtggat
gtatctaacctggtttcttgtcactcttctgcataaaaagtatgatgctc
gccttgaaaaattacattcaggttctactcaatctcttgtgccacatctg
tttgtcattcattcgccgactccttgtccacctgcaactagagacctgtt
ctacgcagacagggaccaaaaagggtctgcagcaaatgagtccatgaaac
tctccttgcttcctaagacccttccatttctactcctagtctcagcatac
agaaaaattgatgatctccttattatatcaagaacagaaaagaatggcta
accttactgggaactcttcaagtaacaatgtgtaagttaacatggcttca
gatatcctcacaaaaaaaaaaaaaaaaaaaaaaagaagatgagaaaagaa
agaaaaaaaaagactattttcttttttaaaagcgggtgctgtcttagctt
gttttgtgtcactttttaaagtagagcatgaactagaatctttagaaaga
gatgtgtttctcagccctggaggctggagcggttctatatcaagacatgg
gcatcttctttttctcctcattatatggaaaactcaaatagtgacaacag
cagatgccctgaaatgcagctcatgcaatgaaaattaatccatccagaag
tgatcagcctctatgcctaaatctcctcatgaccctctaacctcctccat
tgtctgctgagttaccaccctaaccctctaagtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158204251_158204289
seq2: B6Ng01-227H22.b_913_951 (reverse)

seq1  ACCTCACTCAGGATGATATTTTCTAGTTCCATCCATTTG  39
      |||||| ||||||||||||||||||||||||||||||||
seq2  ACCTCATTCAGGATGATATTTTCTAGTTCCATCCATTTG  39

seq1: chr8_33778231_33779290
seq2: B6Ng01-227H22.g_148_1198

seq1  ATTACAAAGAACGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGAACGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGG  50

seq1  GACAATAGCCAGCCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGCCAGCCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAA  100

seq1  TAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTTC  150

seq1  TTAACTAGGCCCAAAGAAACAGCATAATCAGGCATTTACTAGAACCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGGCCCAAAGAAACAGCATAATCAGGCATTTACTAGAACCCCTG  200

seq1  GTGGTGGGCTTAACAATAGACTAGCATTATACCTGGCTCCCTTCTTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGCTTAACAATAGACTAGCATTATACCTGGCTCCCTTCTTAGTG  250

seq1  GCAGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTCAC  300

seq1  TGTAATTCAGTGGATGTATCTAACCTGGTTTCTTGTCACTCTTCTGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCAGTGGATGTATCTAACCTGGTTTCTTGTCACTCTTCTGCATA  350

seq1  AAAAGTATGATGCTCGCCTTGAAAAATTACATTCAGGTTCTACTCAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGATGCTCGCCTTGAAAAATTACATTCAGGTTCTACTCAATCT  400

seq1  CTTGTGCCACATCTGTTTGTCATTCATTCGCCGACTCCTTGTCCACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCCACATCTGTTTGTCATTCATTCGCCGACTCCTTGTCCACCTGC  450

seq1  AACTAGAGACCTGTTCTACGCAGACAGGGACCAAAAAGGGTCTGCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGACCTGTTCTACGCAGACAGGGACCAAAAAGGGTCTGCAGCAA  500

seq1  ATGAGTCCATGAAACTCTCCTTGCTTCCTAAGACCCTTCCATTTCTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCATGAAACTCTCCTTGCTTCCTAAGACCCTTCCATTTCTACTC  550

seq1  CTAGTCTCAGCATACAGAAAAATTGATGATCTCCTTATTATATCAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCAGCATACAGAAAAATTGATGATCTCCTTATTATATCAAGAAC  600

seq1  AGAAAAGAATGGCTAACCTTACTGGGAACTCTTCAAGTAACAATGTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATGGCTAACCTTACTGGGAACTCTTCAAGTAACAATGTGTAA  650

seq1  GTTAACATGGCTTCAGATATCCTCACAAAAAAAAAAAAAAAAAAAAAAAA  700
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  GTTAACATGGCTTCAGATATCCTCAC----AAAAAAAAAAAAAAAAAAAA  696

seq1  AAAGAAGAAGAAGAAAAGAAAAGAAAAAAAAAGAACTATTTCTTTTTTAA  750
      |||||||| | ||||||| |||||||||||||| |||||||  ||||| |
seq2  AAAGAAGATG-AGAAAAG-AAAGAAAAAAAAAG-ACTATTTTCTTTTTTA  743

seq1  AAAGCGGGTGCTGTCTTAGCTTGTTTTGTGTCAC-TTTTAAAGTAGAGCA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGCGGGTGCTGTCTTAGCTTGTTTTGTGTCACTTTTTAAAGTAGAGCA  793

seq1  TGAACTAGAATCTTTAGAAAGAGATGTGTTTCTCAGCACTGGAGGCTGGA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAACTAGAATCTTTAGAAAGAGATGTGTTTCTCAGCCCTGGAGGCTGGA  843

seq1  GCGGTTCTATATCAAGACATGGGCATCTTC-TTTTCTCCTCATTATATGG  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCGGTTCTATATCAAGACATGGGCATCTTCTTTTTCTCCTCATTATATGG  893

seq1  AAAAACCCAAATAGTGAC-ACAGCAGATGCCTGGAAATGCAGCCCATGCA  947
       ||||| ||||||||||| ||||||||||||  |||||||||| ||||||
seq2  -AAAACTCAAATAGTGACAACAGCAGATGCCCTGAAATGCAGCTCATGCA  942

seq1  ATGGAAATTAATCCATCCAAGAAGGTGGATTCAGCTCTTATGGCCTAAAT  997
      ||| |||||||||||||| |||| |||   |||||   ||| ||||||||
seq2  ATGAAAATTAATCCATCC-AGAA-GTG--ATCAGCCTCTAT-GCCTAAAT  987

seq1  CT-CTCATGGACCCTCTAAACTTCCTTCAATTGTTCTGCTGAGTTA-CAC  1045
      || ||||| |||||||||| ||  | || |||| |||||||||||| |||
seq2  CTCCTCAT-GACCCTCTAACCT--CCTCCATTG-TCTGCTGAGTTACCAC  1033

seq1  CCTA--CCTCT-AGTGAC  1060
      ||||  ||||| ||||||
seq2  CCTAACCCTCTAAGTGAC  1051