BAC Information

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BAC

Clone NameB6Ng01-228H17
ChromosomeX (Build37)11 (Build37)
Map Location 129,325,274 - 129,325,81569,892,035 - 69,892,445
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC245600, EG631264
Downstream geneLOC665846, LOC665850, LOC665854, LOC100040794, Pcdh19, LOC100040831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228H17.bB6Ng01-228H17.g
ACCGA041884GA041885
length657750
definitionB6Ng01-228H17.b B6Ng01-228H17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,325,274 - 129,325,815)(69,892,035 - 69,892,445)
sequence
gaattcctttgtttagtgtaaaatggataatgtgaatacacaaagagtca
aatgaggaaaacaaatatcagcagagtatttaatcataaatgggacacca
atattagcacaacaaacacctctcattctaagaattcttgggttatcatt
gaagagagtgcataaagattaaaaagccaaagtttgcgatgattggggtg
aaaaattatcttctggacatgatagtatcataatactcatgaactcacaa
tagatatgacactgcaagccagtcatcattcaaacaagtgttggggaagg
gaaatggggccacacctgtagttgaagaagcattggtatttgatggctac
caggacagatgtttgtttccattaaggtggcagcctctgttaggttatct
atgatatggttgttaagccttcacccatgtatatgtaggcagcagtgact
ggtctcaatggattatgaaaagaggacttgaagttgggagggaggaatat
gtggtagagaaggtctctacagagtagacaggaagtgaagtatggatata
atcaaaatacatcattcattttatcgatcgataatgctaattaaggcaat
ttaaagtgaaataacataagtatgggcaatagagaaagaaaagtgtgtgt
atgtgtg

gaattctggtgtaatgctgatagggtctgcctttatatgttacttgactt
tttctcttactgcttttaatattctttgttttgttcatttggtgttttga
ctattatctgactggatgaatttcttttctggtccaatctatttggaatt
ctgtagtcctcttgtatatttatgagcatctgtttaggttagggaagttt
tcttctataattttgttgaacatatttagtggtcctttaatttgggaatc
ttagctctctgttatacctattatccatatatttggtcttctcattgtgt
cctggatttcctggttgttttgggttagaagctttacgtgttttgctttt
tgtttgtttgtttgtttgtttgtttgttttttcgagacagggtttctctg
tataaccctggctgaccatggaacacactttgtagaccaggctggcctcg
aactgagaaatctgcctctctctgcctcccaagtgctgggattaaaggtg
tgtaccaccatgcccagcgtgttttgcattttctttgagtgttgtatcaa
tgttttctatggaatcttctgcacctgagattctctcctctatctcttgt
attctatgactcccaatctcttttccaggatttctatcagtggggttgtc
tcgcctcatgatttcattattgtttatatttccatttttagatcctggaa
ggtttttatttcaaattttcttcacctgtttgtgtgtgtgtgtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_129325274_129325815
seq2: B6Ng01-228H17.b_160_703 (reverse)

seq1  CACACATACACACACTTTTC-TTCTCTATTGCCCATACTTATGTTATTTC  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACACATACACACACTTTTCTTTCTCTATTGCCCATACTTATGTTATTTC  50

seq1  ACTTT-AATTGCCTTAATTAGCATTATCGATCGATAAAATGAATGATGTA  98
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATTGCCTTAATTAGCATTATCGATCGATAAAATGAATGATGTA  100

seq1  TTTTGATTATATCCATACTTCACTTCCTGTCTACTCTGTAGAGACCTTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTATATCCATACTTCACTTCCTGTCTACTCTGTAGAGACCTTCT  150

seq1  CTACCACATATTCCTCCCTCCCAACTTCAAGTCCTCTTTTCATAATCCAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACATATTCCTCCCTCCCAACTTCAAGTCCTCTTTTCATAATCCAT  200

seq1  TGAGACCAGTCACTGCTGCCTACATATACATGGGTGAAGGCTTAACAACC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCAGTCACTGCTGCCTACATATACATGGGTGAAGGCTTAACAACC  250

seq1  ATATCATAGATAACCTAACAGAGGCTGCCACCTTAATGGAAACAAACATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATAGATAACCTAACAGAGGCTGCCACCTTAATGGAAACAAACATC  300

seq1  TGTCCTGGTAGCCATCAAATACCAATGCTTCTTCAACTACAGGTGTGGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGTAGCCATCAAATACCAATGCTTCTTCAACTACAGGTGTGGCC  350

seq1  CCATTTCCCTTCCCCAACACTTGTTTGAATGATGACTGGCTTGCAGTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCTTCCCCAACACTTGTTTGAATGATGACTGGCTTGCAGTGTC  400

seq1  ATATCTATTGTGAGTTCATGAGTATTATGATACTATCATGTCCAGAAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATTGTGAGTTCATGAGTATTATGATACTATCATGTCCAGAAGAT  450

seq1  AATTTTTCACCCCAATCATCGCAAACTTTGGCTTTTTAATCTTTATGCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCACCCCAATCATCGCAAACTTTGGCTTTTTAATCTTTATGCAC  500

seq1  TCTCTTCAATGATAACCCAAGAATTCTTAGAATGAGAGGTGTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAATGATAACCCAAGAATTCTTAGAATGAGAGGTGTTT  544


seq1: chr11_69892035_69892445
seq2: B6Ng01-228H17.g_416_817 (reverse)

seq1  TACACACACACACACACACAGAGGTCTGTGTATGAAAATAACATGTCTAA  50
      |||||||||||||||||||| |   | |   | ||||||   |  |  ||
seq2  TACACACACACACACACACAAA---CAGGTGAAGAAAATTTGAAATAAAA  47

seq1  GTCTATTGAGTCCTTATTTTGGGCAGCAGAGGACCAATAAACA--AGTGA  98
        ||      |||    | |    |  |  |||   |||||||  | |||
seq2  ACCT------TCCAGGATCT----AAAAATGGAAATATAAACAATAATGA  87

seq1  CATTGTGAATGGC---ACCAGCCTTGGGATTAAGTTGCCTTTGAAAGCCC  145
       ||  |||  |||   || | ||    |||  |  | |||   ||||   
seq2  AATCATGA--GGCGAGACAACCCCACTGATAGAAAT-CCTGGAAAAGAGA  134

seq1  TTCCAACTGTCCTTGA-------AGAGCGAGGAATGGGTCTACAGGTCC-  187
      ||   |  ||| | ||       |||  |||||  |  ||| ||||| | 
seq2  TTGGGA--GTCATAGAATACAAGAGATAGAGGAGAGAATCT-CAGGTGCA  181

seq1  --TCATGCCATAGCCATCGAGTGCTTATTTCTTAACAC-CACCG-ACATG  233
          || ||||||  | | | || |        ||||| ||  | | |||
seq2  GAAGATTCCATAGAAAAC-ATTGAT------ACAACACTCAAAGAAAATG  224

seq1  CGTCTAAAGAAGGGCTACTCTGCCCACACCTTTAATCCCAGCACTCAGGA  283
      |     | |  ||||      |  |||||||||||||||||||||  |||
seq2  CAAAACACGCTGGGCATGGTGGTACACACCTTTAATCCCAGCACTTGGGA  274

seq1  GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  333
      | |||||  |||| ||||||| ||||||||||||||||||||||||||||
seq2  GGCAGAGAGAGGCAGATTTCTCAGTTCGAGGCCAGCCTGGTCTACAAAGT  324

seq1  GAGTTCCA-GGATAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAACAA  382
      | |||||| ||  |||||||| |||||||||||||||||||| |||| ||
seq2  GTGTTCCATGGTCAGCCAGGGTTATACAGAGAAACCCTGTCTCGAAA-AA  373

seq1  ACAAACAAACAAACAAACAAACAAACAAA  411
      |||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAACAAA  402


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