BAC Information

Click to search

BAC

Clone NameB6Ng01-232E09
Chromosome15 (Build37)X (Build37)
Map Location 62,948,646 - 62,948,696144,302,421 - 144,303,234
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePvt1, LOC100040584, H2afy3, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232E09.bB6Ng01-232E09.g
ACCGA044653GA044654
length8951,075
definitionB6Ng01-232E09.b B6Ng01-232E09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,948,646 - 62,948,696)(144,302,421 - 144,303,234)
sequence
gaattcaagaagttagactctagagaaccaaataaccttattaaaaatgg
ggtacagatcttctgtattcatttctttgttgagggaaatctgggcagtt
tccagcttctggctactataaatatagctgcaatgaacatagtggagcat
gtgtccttatgacatgtggcagcaccttctgtgtatatggccaggagtgg
tatagctggatcttcattactatgtccaattttctgaggtcctgcaagac
tgatttccatatgggttgtactagcttgcaatcccaccagcaatgaagga
gtgttcttctatctccacatcctcacccacatctgctgttagcttagcgt
ttttattattggatattttcttcatttacatttcaaaagttttctcttct
cctggtttcccctccaaaaaacaccatccccctactcagcaacccaccca
ctcccaatttctggtcctgtcattcccccaaactggggcatagagccttc
aaaggacaaatggcctatcctcccattgatggacatcctactagcccatc
ctctgctgcacatgcaggtcagctgagtttttgatcttagcaattctgac
tggtgtgaggtgtaatgtcatggtctttttgatttgcatttccctgatat
ctaagaatgttgagattttctttaggtgtttctcagagccatttgagatt
cctcagttgtaaactccttgtttagagctgtatcccattttttatttgga
tattttctttatttacatttcaaatattttcccctttctgggtctgttct
ccccttctgaaatgctctatcccatctccactctccctgcatctatgagg
gtgcttcacccacccacctgaccactccttttctttcttgatctg
gaattcagtgagaatattatctattcattaacattcaaatttacttcaag
tagagatggtgaaactaattaggcattacaaaaaacagagctagaatacc
tcagggctagtctgcagggtgatttcttaggacagtagccagtcttaccc
aaacaagggaatgtacaatggcctagctaataggtaggtttaccatgtga
gagttagggaatcccactgagacaggaaacttcactacagccaggtataa
caggcaacattgcatattagaagcaagttggtgaattcttctgacaactg
gagattctccacagatatttaagagaaaatccaatttcactcatacaaga
atttatcaaggcctaggaaataggatgtttgtggtattgcattattcatg
agaaggtctgctagagcagaactccctggtgctagctttcacaaggctca
aaggagtagcacaaattgtaattagggtgtgaaatccttacctgtgatta
gctgaccctaagcagagctgttttatctttactgaaatatgacatggttc
ctgtaaatccttttgaagtcattcctttgttttgtgtcaggtaacttcaa
tgtactttgcctgctgtgacattctacctctttgttttctatattatatt
ctacacaacctctcctgttgattttgtctgtcattccctgactccttgtc
accctgtaactagagacccattctatgcagacagggaacaaaaagggtct
gcggcaggggactagtttaagaacttaggacaaaagctggtgtgaggtat
agggagggaaacacaactgtcagtccagtagggcacccaatatgaggtgt
ctggcacatcctcacactctcaagtcatttcttcctgcagagctttccag
gcagactaagagatactaagaaaccaaggaaatataaatctctctgatgt
ccttggtctccagaagaaacattctcagaacctttggagcctagctatta
gaacaccatgcttcaaagatcatgatgtatcattatggttaaaatatcaa
acgaaatgctgggtaaaatggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_62948646_62948696
seq2: B6Ng01-232E09.b_782_833

seq1  ATTTTTTA-TTGGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTT  49
      |||||||| |||||||||||||||||||||||||||||| || |||||||
seq2  ATTTTTTATTTGGATATTTTCTTTATTTACATTTCAAATATTTTCCCCTT  50

seq1  TC  51
      ||
seq2  TC  52

seq1: chrX_144302421_144303234
seq2: B6Ng01-232E09.g_327_1144

seq1  CATTGCATATTAGAAGCAAGTTGGTGAATTCTTCTGACAACTGGAGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATATTAGAAGCAAGTTGGTGAATTCTTCTGACAACTGGAGATTC  50

seq1  TCCACAGATATTTAAGAGAAAATCCAATTTCACTCATACAAGAATTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGATATTTAAGAGAAAATCCAATTTCACTCATACAAGAATTTATC  100

seq1  AAGGCCTAGGAAATAGGATGTTTGTGGTATTGCATTATTCATGAGAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTAGGAAATAGGATGTTTGTGGTATTGCATTATTCATGAGAAGGT  150

seq1  CTGCTAGAGCAGAACTCCCTGGTGCTAGCTTTCACAAGGCTCAAAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGAGCAGAACTCCCTGGTGCTAGCTTTCACAAGGCTCAAAGGAGT  200

seq1  AGCACAAATTGTAATTAGGGTGTGAAATCCTTACCTGTGATTAGCTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATTGTAATTAGGGTGTGAAATCCTTACCTGTGATTAGCTGACC  250

seq1  CTAAGCAGAGCTGTTTTATCTTTACTGAAATATGACATGGTTCCTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAGAGCTGTTTTATCTTTACTGAAATATGACATGGTTCCTGTAAA  300

seq1  TCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTACTT  350

seq1  TGCCTGCTGTGACATTCTACCTCTTTGTTTTCTATATTATATTCTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGTGACATTCTACCTCTTTGTTTTCTATATTATATTCTACACA  400

seq1  ACCTCTCCTGTTGATTTTGTCTGTCATTCCCTGACTCCTTGTCACCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTGTTGATTTTGTCTGTCATTCCCTGACTCCTTGTCACCCTGT  450

seq1  AACTAGAGACCCATTCTATGCAGACAGGGAACAAAAAGGGTCTGCGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGACCCATTCTATGCAGACAGGGAACAAAAAGGGTCTGCGGCAG  500

seq1  GGGACTAGTTTAAGAACTTAGGACAAAAGCTGGTGTGAGGTATAGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGTTTAAGAACTTAGGACAAAAGCTGGTGTGAGGTATAGGGAGG  550

seq1  GAAACACAACTGTCAGTCCAGTAGGGCACCCAATATGAGGTGTCTGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAACTGTCAGTCCAGTAGGGCACCCAATATGAGGTGTCTGGCAC  600

seq1  ATCCTCACACTCTCAAGTCATTTCTTCCTGCAGAGC-TTCCAGGCAGGAC  649
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ATCCTCACACTCTCAAGTCATTTCTTCCTGCAGAGCTTTCCAGGCA-GAC  649

seq1  TAAGAGATACTAAGAAACC-AGGAAATATAAATCTCTTCTGATGTCCTTG  698
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TAAGAGATACTAAGAAACCAAGGAAATATAAATCTC-TCTGATGTCCTTG  698

seq1  GTCTCCAGAAGAAACATTCTCAG-ACCTTTGGAGCCTAGCATATTAGAAC  747
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  GTCTCCAGAAGAAACATTCTCAGAACCTTTGGAGCCTAGC-TATTAGAAC  747

seq1  A-CATGC-TCAAAGATCATGATGTATCA-TAT-GTTAAAATACAAAACAA  793
      | ||||| |||||||||||||||||||| ||| |||||||||  ||||  
seq2  ACCATGCTTCAAAGATCATGATGTATCATTATGGTTAAAATATCAAAC-G  796

seq1  AAATGCT-GTTAAAATGTCTCT  814
      ||||||| | ||||||| ||||
seq2  AAATGCTGGGTAAAATGGCTCT  818