BAC Information

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BAC

Clone NameB6Ng01-233H16
ChromosomeX (Build37)
Map Location 72,822,556 - 73,002,384
singlet/doubletdoublet
Overlap geneRab39b, EG635243
Upstream geneOlfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1
Downstream genePls3, LOC635275, EG635295, LOC667537, LOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233H16.bB6Ng01-233H16.g
ACCGA045526GA045527
length1,148904
definitionB6Ng01-233H16.b B6Ng01-233H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,822,556 - 72,823,698)(73,001,483 - 73,002,384)
sequence
ggaattctcttatgtgagtaacctcatactatttcttcagaaatgattcc
accctctggcaactgactgtatgatggttacaagacagtcaattaatcag
tctccatttcctttatattagggcatattcattctctctgtgtctctgtc
tctccctctgtcttttcttccccacaaatataaacggatatatagaaaga
agtcaatatacatctacctacctatagctttcagttatgttaaaatgact
tggatttttttaaactatgaatcatagggtctgattttgatgaattatac
agtgatcaatttcaagttatttattagctaccaaaagcagattgatggag
ttgtggttcaaataatgtgataatgaatggccttctcctgcctgggcggt
tctttcctgcatcgaactcaaaggtagctcaaagtgggcttgaaaagccc
cagacagacccttgtttgtcaccctggcagcatcgcgaaaagaaccggga
agtcctctttccccagggactgaataagccccaaagaccctcccactgct
cgcgcgggcccgtggtgcactcccacctgaacctctcttgacccgctgta
tcccagatctggagcttgatgcgttttcctggctcgatctccaccaaacg
ggagaaaaaatctacccccacggtgggatctgaaacctgagcaaagcggc
cctcggtgaagcggcggatcaggcaggacttgcccaccgtggaatcgccg
atgacaatgagccggaactggtacagccagatggcctccatggcagtggc
ctggcaggactcttcggcccgggcctggggaggcgggagggggcgcccca
ccaaggcctttagcacagatcaacccgtttctaggatcgggccgcgagaa
catcacctggcctggtagctgaaagcaagggtaggcccaggcgctggggg
aacgaagggatggatgctgcgctcgcaaaggtgatgaatggcagcagcat
cagcaccacgcactctgactcatcactgaaaaccgagttactgtaatttc
tctgcgtagacgcggcagtagtttccaccacctgttctgtagaggagcgc
acacaaaaacggacagagaaagtatggatctggattttaattataccg
gaattcacagatgcagtggtctaggatcttagaagactgggagacccgag
tttctttctttgtctgcctgtctgtctctgtcctttctatctgtccccct
gcctctctgtctctgtctctgtctctgtctctgtctctgtcttctgtctc
tctctgtctctcaccatctctctctacctctctctctctccctctctgtt
tgtgtcagtgtatgtgtgtgtcccatggtcaaaaagctaggagactcaag
tccctgaaggaggtccatcttggttcagggtttggcagttcttatggtgt
tgagctcagtattgtgtgagaaggacaggattggctgtaggggaaacctt
aaggtttcatgtatccccaggccataggtcaggtgtgcaggaggtgcata
aagatcctagggctaaggcaggggtattgtcccctatacttctgttcagg
tggatgagacaactgtgtaacactaatatggagggtggctggatcagtcc
ttccttgtggttgcaggccttgcacctctgagaactcagagcaggcctgc
ctgtgcagacagaactctcttggttgtattagagcagatccctcctgcaa
tttggtagggagggagaattgagaggcaatgtcaggcttgtctcctcgag
actgttagaggggtcttcttccaccagctgtgaactaagatctcaggagt
gcgaggctggacctctggagattctcagtgctcatgaaaggaaggcttgc
ctgtgggtcgtgaaatcatttcccacatggtcatggtatccatcatgtgg
aaccaaagagacccatctgccctggaaactgtgcctggaactgtacatat
tggtgatccagaggcagagaataggtaggttaggtaggtaggtagggaag
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_72822556_72823698
seq2: B6Ng01-233H16.b_45_1192

seq1  GGAATTCTCTTATGTGAGTAACCTCATACTATTTCTTCAGAAATGATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTCTTATGTGAGTAACCTCATACTATTTCTTCAGAAATGATTCC  50

seq1  ACCCTCTGGCAACTGACTGTATGATGGTTACAAGACAGTCAATTAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGGCAACTGACTGTATGATGGTTACAAGACAGTCAATTAATCAG  100

seq1  TCTCCATTTCCTTTATATTAGGGCATATTCATTCTCTCTGTGTCTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTCCTTTATATTAGGGCATATTCATTCTCTCTGTGTCTCTGTC  150

seq1  TCTCCCTCTGTCTTTTCTTCCCCACAAATATAAACGGATATATAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGTCTTTTCTTCCCCACAAATATAAACGGATATATAGAAAGA  200

seq1  AGTCAATATACATCTACCTACCTATAGCTTTCAGTTATGTTAAAATGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATATACATCTACCTACCTATAGCTTTCAGTTATGTTAAAATGACT  250

seq1  TGGATTTTTTTAAACTATGAATCATAGGGTCTGATTTTGATGAATTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTTAAACTATGAATCATAGGGTCTGATTTTGATGAATTATAC  300

seq1  AGTGATCAATTTCAAGTTATTTATTAGCTACCAAAAGCAGATTGATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAATTTCAAGTTATTTATTAGCTACCAAAAGCAGATTGATGGAG  350

seq1  TTGTGGTTCAAATAATGTGATAATGAATGGCCTTCTCCTGCCTGGGCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTCAAATAATGTGATAATGAATGGCCTTCTCCTGCCTGGGCGGT  400

seq1  TCTTTCCTGCATCGAACTCAAAGGTAGCTCAAAGTGGGCTTGAAAAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGCATCGAACTCAAAGGTAGCTCAAAGTGGGCTTGAAAAGCCC  450

seq1  CAGACAGACCCTTGTTTGTCACCCTGGCAGCATCGCGAAAAGAACCGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACCCTTGTTTGTCACCCTGGCAGCATCGCGAAAAGAACCGGGA  500

seq1  AGTCCTCTTTCCCCAGGGACTGAATAAGCCCCAAAGACCCTCCCACTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTTTCCCCAGGGACTGAATAAGCCCCAAAGACCCTCCCACTGCT  550

seq1  CGCGCGGGCCCGTGGTGCACTCCCACCTGAACCTCTCTTGACCCGCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGGGCCCGTGGTGCACTCCCACCTGAACCTCTCTTGACCCGCTGTA  600

seq1  TCCCAGATCTGGAGCTTGATGCGTTTTCCTGGCTCGATCTCCACCAAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATCTGGAGCTTGATGCGTTTTCCTGGCTCGATCTCCACCAAACG  650

seq1  GGAGAAAAAATCTACCCCCACGGTGGGATCTGAAACCTGAGCAAAGCGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAATCTACCCCCACGGTGGGATCTGAAACCTGAGCAAAGCGGC  700

seq1  CCTCGGTGAAGCGGCGGATCAGGCAGGACTTGCCCACCGTGGAATCGCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTGAAGCGGCGGATCAGGCAGGACTTGCCCACCGTGGAATCGCCG  750

seq1  ATGACAATGAGCCGGAACTGGTACAGCCAGATGGCCTCCATGGCAGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGAGCCGGAACTGGTACAGCCAGATGGCCTCCATGGCAGTGGC  800

seq1  CTGGCAGGACTCTTCGGCCCGGGCCTGGGGAGGCGGGAGGGGGCGCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGACTCTTCGGCCCGGGCCTGGGGAGGCGGGAGGGGGCGCCCCA  850

seq1  CCAAGGCC-TTAGCACAGATCAACCCGTTTCTA-GATC-GGCCGCGAGAA  897
      |||||||| |||||||||||||||||||||||| |||| |||||||||||
seq2  CCAAGGCCTTTAGCACAGATCAACCCGTTTCTAGGATCGGGCCGCGAGAA  900

seq1  CATCA-CTGGCCTGGTAGCCTGAAGCAA-GGTAGGCCCAGGCGCTGGGGG  945
      ||||| |||||||||||||   |||||| |||||||||||||||||||||
seq2  CATCACCTGGCCTGGTAGCTGAAAGCAAGGGTAGGCCCAGGCGCTGGGGG  950

seq1  AACGAAGGGATGGATGCTGCGCTCGCAAAGGTGATGAAATGGCAGCAGCA  995
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACGAAGGGATGGATGCTGCGCTCGCAAAGGTGATG-AATGGCAGCAGCA  999

seq1  TCAGCACCACGCACTCTGACTCATCACTGAAAACCGAGTTACTGTAA-TT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGCACCACGCACTCTGACTCATCACTGAAAACCGAGTTACTGTAATTT  1049

seq1  CTCTGCGTAGACGCGGCAGTAGTTT-CACCACACTG-TCTGTTAGAGGAG  1092
      ||||||||||||||||||||||||| |||||| ||| |||| ||||||||
seq2  CTCTGCGTAGACGCGGCAGTAGTTTCCACCAC-CTGTTCTG-TAGAGGAG  1097

seq1  CGCACACAAAAACGGACAG-GAGAGTAATGTGTTCT-GTTTTTAATTATA  1140
      ||||||||||||||||||| || ||| ||| | ||| | |||||||||||
seq2  CGCACACAAAAACGGACAGAGAAAGT-ATG-GATCTGGATTTTAATTATA  1145

seq1  CCG  1143
      |||
seq2  CCG  1148

seq1: chrX_73001483_73002384
seq2: B6Ng01-233H16.g_67_970 (reverse)

seq1  CCACCTT-CCTACCTACCTACCT-ACCTACCTATTCTCTGCCTCTGGATC  48
      || |||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCCCTTCCCTACCTACCTACCTAACCTACCTATTCTCTGCCTCTGGATC  50

seq1  ACCAATATGTACAGTTCCAGGCACAGTTTCCAGGGCAGATGGGTCTCTTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATGTACAGTTCCAGGCACAGTTTCCAGGGCAGATGGGTCTCTTT  100

seq1  GGTTCCACATGATGGATACCATGACCATGTGGGAAATGATTTCACGACCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCACATGATGGATACCATGACCATGTGGGAAATGATTTCACGACCC  150

seq1  ACAGGCAAGCCTTCCTTTCATGAGCACTGAGAATCTCCAGAGGTCCAGCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAGCCTTCCTTTCATGAGCACTGAGAATCTCCAGAGGTCCAGCC  200

seq1  TCGCACTCCTGAGATCTTAGTTCACAGCTGGTGGAAGAAGACCCCTCTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACTCCTGAGATCTTAGTTCACAGCTGGTGGAAGAAGACCCCTCTAA  250

seq1  CAGTCTCGAGGAGACAAGCCTGACATTGCCTCTCAATTCTCCCTCCCTAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCGAGGAGACAAGCCTGACATTGCCTCTCAATTCTCCCTCCCTAC  300

seq1  CAAATTGCAGGAGGGATCTGCTCTAATACAACCAAGAGAGTTCTGTCTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCAGGAGGGATCTGCTCTAATACAACCAAGAGAGTTCTGTCTGC  350

seq1  ACAGGCAGGCCTGCTCTGAGTTCTCAGAGGTGCAAGGCCTGCAACCACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGCCTGCTCTGAGTTCTCAGAGGTGCAAGGCCTGCAACCACAA  400

seq1  GGAAGGACTGATCCAGCCACCCTCCATATTAGTGTTACACAGTTGTCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACTGATCCAGCCACCCTCCATATTAGTGTTACACAGTTGTCTCA  450

seq1  TCCACCTGAACAGAAGTATAGGGGACAATACCCCTGCCTTAGCCCTAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGAACAGAAGTATAGGGGACAATACCCCTGCCTTAGCCCTAGGA  500

seq1  TCTTTATGCACCTCCTGCACACCTGACCTATGGCCTGGGGATACATGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGCACCTCCTGCACACCTGACCTATGGCCTGGGGATACATGAAA  550

seq1  CCTTAAGGTTTCCCCTACAGCCAATCCTGTCCTTCTCACACAATACTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGTTTCCCCTACAGCCAATCCTGTCCTTCTCACACAATACTGAG  600

seq1  CTCAACACCATAAGAACTGCCAAACCCTGAACCAAGATGGACCTCCTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACCATAAGAACTGCCAAACCCTGAACCAAGATGGACCTCCTTCA  650

seq1  GGGACTTGAGTCTCCTAGCTTTTTGACCATGGGACACACACATACACTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGAGTCTCCTAGCTTTTTGACCATGGGACACACACATACACTGA  700

seq1  CACAAACAGAGAGGGAGAGAGAGAGAGGTAGAGAGAGATGGTGAGAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAGAGAGGGAGAGAGAGAGAGGTAGAGAGAGATGGTGAGAGACA  750

seq1  GAGAGAGACAGAAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAGAAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAG  800

seq1  AGGCAGGGGGACAGATAGAAAGGACAGAGACAGACAGGCAGACAAAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGGACAGATAGAAAGGACAGAGACAGACAGGCAGACAAAGAAA  850

seq1  GAAACTCGGGTCTCCCAGTCTTCTAAGATCCTAGACCACTGCATCTGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCGGGTCTCCCAGTCTTCTAAGATCCTAGACCACTGCATCTGTGA  900

seq1  ATTC  902
      ||||
seq2  ATTC  904