BAC Information

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BAC

Clone NameB6Ng01-233M05
ChromosomeX (Build37)
Map Location 108,773,662 - 108,774,801
singlet/doubletsinglet
Overlap geneD030011N01Rik
Upstream geneLOC100043316, Pou3f4, Cylc1, LOC100042872, Rps6ka6, EG664791
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233M05.bB6Ng01-233M05.g
ACCGA045726GA045727
length1,1371,183
definitionB6Ng01-233M05.b B6Ng01-233M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgagggtaatcactgactgccaatgaaaacacttcacgaatt
tccaagttttgtgttctacagcaagggtctctaatggttggcttttgccc
acataagttatgtgatgccagacctgcatgttcaggtttatatgaccttt
gaatcccaactggttcaattttgcaaggtcgctggcacacagatggcttt
tgaggtactgtcatttctgaagcttgcaccggagaacttccatagctttt
ctttgtgtgattgtacactgagtttccagcatttagtacacttgtctgtc
ttgacaaaataattgtcttttcccctaggagcacagaagcattcttacag
tgcgctacttgtctttgaacaggaatgtgcaattgtaattcagtgtcatt
tttattggctgccttctgaataggaattttatgtgcttctgtaatttgtg
tatttgtatgctttgtagtgccttgcttacttgatgagcttactggactg
tatataccagttacaatgacatcattattggcagaagtccaagaagattg
ctggcttgaagggcgggcaatattaaccacatttctgactgtaatgtctg
gcgctgccaatgaggtaccagacacagttcctgctgctcctgattcacag
cttttactactcatttttcttcgcttattgccaacccacgtctgaaaaga
taaaaaaaaaaaggcaatatgagaaagttaaaaacaagcttagagaaccc
catttctaaatgatgaattgtattcttatcatagaaacaaagcttacaca
caagcaaaaggagaagatccaataaaagacaaagtaaccaaagaataaga
gcaaacatgattaaagactagcacccgagaatacaaggaagaacatatta
ctacttctctctgccataagatccatcaaattaatactgagaactgcaaa
aatgtttaagaattctaaatgtttctatcctttgatccatcaaataatat
ctaggaatgcatctaaaatacagttattatctgggccagttataacttct
ctgcatttaccttggccaacagcaacagagagccttctcctaccaaggat
ggagtggggagccacattgaaatcaacatacttgaca
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaatatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacaatcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcattctggcggttcctca
gaaaattggacatagtactactggaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccagtat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtacttactgataagtggatattagcccaaaact
taggattcccaagatataagatacaatttgctaaacgcatgaaactcaag
aataatgaagaccaaagtgtggacactttgccccttcctagaaatgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttatcaaaa
ggacccagatgtagctgtctcttgtgagactatgcaggggccagcaaaca
ccgaagtgaatgcttcacagtttagctattggatgggtcacatggtcccc
aatggaaggagctagaagaaagtacccaaggagctaaagggaactgcaaa
cctatagtggaacaacaatatgaactaaccagtacctggagcctctttct
tctcttagctgcatatgtatcacaagatgaacctagttcaagcccattca
ctggaaagaggaggtcctttggaacttgcacttatttgtcagtacagtaa
cgccagggacaaatggcttattgtggtggttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_108773662_108774801
seq2: B6Ng01-233M05.b_46_1182

seq1  GAATTCTCTGAGGGTAATCACTGACTGCCAATGAAAACACTTCACGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGGGTAATCACTGACTGCCAATGAAAACACTTCACGAATT  50

seq1  TCCAAGTTTTGTGTTCTACAGCAAGGGTCTCTAATGGTTGGCTTTTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTTTGTGTTCTACAGCAAGGGTCTCTAATGGTTGGCTTTTGCCC  100

seq1  ACATAAGTTATGTGATGCCAGACCTGCATGTTCAGGTTTATATGACCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTTATGTGATGCCAGACCTGCATGTTCAGGTTTATATGACCTTT  150

seq1  GAATCCCAACTGGTTCAATTTTGCAAGGTCGCTGGCACACAGATGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAACTGGTTCAATTTTGCAAGGTCGCTGGCACACAGATGGCTTT  200

seq1  TGAGGTACTGTCATTTCTGAAGCTTGCACCGGAGAACTTCCATAGCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACTGTCATTTCTGAAGCTTGCACCGGAGAACTTCCATAGCTTTT  250

seq1  CTTTGTGTGATTGTACACTGAGTTTCCAGCATTTAGTACACTTGTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGATTGTACACTGAGTTTCCAGCATTTAGTACACTTGTCTGTC  300

seq1  TTGACAAAATAATTGTCTTTTCCCCTAGGAGCACAGAAGCATTCTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAATAATTGTCTTTTCCCCTAGGAGCACAGAAGCATTCTTACAG  350

seq1  TGCGCTACTTGTCTTTGAACAGGAATGTGCAATTGTAATTCAGTGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTACTTGTCTTTGAACAGGAATGTGCAATTGTAATTCAGTGTCATT  400

seq1  TTTATTGGCTGCCTTCTGAATAGGAATTTTATGTGCTTCTGTAATTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGCTGCCTTCTGAATAGGAATTTTATGTGCTTCTGTAATTTGTG  450

seq1  TATTTGTATGCTTTGTAGTGCCTTGCTTACTTGATGAGCTTACTGGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATGCTTTGTAGTGCCTTGCTTACTTGATGAGCTTACTGGACTG  500

seq1  TATATACCAGTTACAATGACATCATTATTGGCAGAAGTCCAAGAAGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCAGTTACAATGACATCATTATTGGCAGAAGTCCAAGAAGATTG  550

seq1  CTGGCTTGAAGGGCGGGCAATATTAACCACATTTCTGACTGTAATGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGAAGGGCGGGCAATATTAACCACATTTCTGACTGTAATGTCTG  600

seq1  GCGCTGCCAATGAGGTACCAGACACAGTTCCTGCTGCTCCTGATTCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCCAATGAGGTACCAGACACAGTTCCTGCTGCTCCTGATTCACAG  650

seq1  CTTTTACTACTCATTTTTCTTCGCTTATTGCCAACCCACGTCTGAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTACTCATTTTTCTTCGCTTATTGCCAACCCACGTCTGAAAAGA  700

seq1  TAAAAAAAAAAAGGCAATATGAGAAAGTTAAAAACAAGCTTAGAGAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAGGCAATATGAGAAAGTTAAAAACAAGCTTAGAGAACCC  750

seq1  CATTTCTAAATGATGAATTGTATTCTTATCATAGAAACAAAGCTTACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAAATGATGAATTGTATTCTTATCATAGAAACAAAGCTTACACA  800

seq1  CAAGCAAAAGGAGAAGATCCAATAAAAGACAAAGTAACCAAAGAATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAAGGAGAAGATCCAATAAAAGACAAAGTAACCAAAGAATAAGA  850

seq1  GCAAACATGATTAAAGACTAGCACCCGAGAATACAAGGAAGAACATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATGATTAAAGACTAGCACCCGAGAATACAAGGAAGAACATATTA  900

seq1  CTACTTCTCTCTGCCATAAGATCCATCAAATTAATACTGAGAACTGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTACTTCTCTCTGCCATAAGATCCATCAAATTAATACTGAGAACTGC-AA  949

seq1  AAATGTTTAAGAATTCTAAAATTGTTTCTATCCTTTGATCCATCAAATAA  1000
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  AAATGTTTAAGAATTCTAAA--TGTTTCTATCCTTTGATCCATCAAATAA  997

seq1  TATTCTAGGAATGCATCTTAAAATACAGTTATTATCT-GGCCAGTTATAA  1049
      || |||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TA-TCTAGGAATGCATC-TAAAATACAGTTATTATCTGGGCCAGTTATAA  1045

seq1  C-TCTCTGCATTTACCTTTGCCCACAGCAAACAAGAG-CTTCTCTAACCA  1097
      | |||||||||||||||| ||| |||||||   |||| ||||||  ||||
seq2  CTTCTCTGCATTTACCTTGGCCAACAGCAACAGAGAGCCTTCTCCTACCA  1095

seq1  AAGAT-GATGGGAGCACCAATCTGAATATCAACATACTTAGACA  1140
      | ||| ||  || |  |||   |||| |||||||||||| ||||
seq2  AGGATGGAGTGGGGAGCCACATTGAA-ATCAACATACTT-GACA  1137