BAC Information

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BAC

Clone NameB6Ng01-234A09
ChromosomeX (Build37)
Map Location 35,371,365 - 35,372,071
singlet/doubletsinglet
Overlap genenone
Upstream geneC330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik
Downstream gene4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234A09.bB6Ng01-234A09.g
ACCGA045910GA045911
length7081,203
definitionB6Ng01-234A09.b B6Ng01-234A09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagttgtgggtcacataccaactattttcaactgcttgacctg
aactaggcctgggagtcagaggaaagtactagagagggagtcatgattac
tcaacaggctggggtgtttgttgctcaggctctaagtgtatgcaacagga
aggtggggacacaaggtactcactagaatggcttagtacattgtcttcct
gggactgtgtgttgaatcacttgtctgaacagttgcagaagggcaggggt
ctggggaactaaccagacttggctggtcagtgaactgcttgacccaaact
caaatctgagtgtcaggatgattcagtaaggtgggctcttgatcctacac
taggttatttggctaccgtaaaggctgttcaacccaagctagaccaggga
gtattaggaggataccccaggatatcttactaaactgagatggtgtccat
tctgattgaccccagtaggccagggagtatgaaaatggctctggctgacc
tgggaattcaccattgtgggctgctgtacagactgtgtaaccccagctgc
acctggcaatatgagaatagattcttactcaccagtctgggctggtgcca
acctgcttaacatgagtgtggtaatggatgaggatgggtggggttctgtg
tcctcatacagactgagatggtagactgacctccccccaatatagagatc
attgctat
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaaat
cttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagataaaaaattcaggtgacag
ctggcaaggatgtggagaaaaaggaacacttctccattgcctctccttca
ttcgtccataatttgattgctgttgtccactataatttctaaagtcatta
caatttcaattgtcattattgttattttcattaaatttcctctgttactg
taaccaccatatattagtaaagacattttaataaaatatttattaaattt
taaaatgccacataactttatatatttaactctaatttttaaaagttgct
ttcacaatatcagaataaaatcattttggcagtcccttagaatattggac
atagtactacctgaggatccagttataccacttctgagcatatacccaga
agatgctccaacatgtaatcaggacacatgctatgttcatagcagcctta
tttataatagccaggagctgaaaagaacgcagttgtccctcaacagagaa
atagatacagaaaatgtggtacatttacacaatggagcactactcagcta
ttaaaaacaatgaatttatgaagttcttgggcaaatggatagaactagaa
aatatcatcctgagtgaggtaacccaatcgcaaaagaacacacatggtat
gtactcactgataagtggctattagccccaaagctccaaataaccaagat
acaagtcacagaccacatgaagctcaagaggaaggaagaacaaattgtgg
gtgctttggtccttggaaaggagaacaaaatactcacaggagcaaatatg
gagataaagtgtagagcagagactgaaggaaaggccacccagagcctgtt
ccatatggagatccatcccatatacagttaccaacccaggcactattgtg
gatgccaacagtgctgctgacaggactgagacagagtccccaatgagact
agagaaaggacccaggagctgatgagctgcagcccataggaggacaacaa
tatgacctacagtaccccagagctccctgtgattaaggcacaaccaagac
acactgggtggactcaatgcttcttagccttgccagtgtgtgtagaccga
tag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_35371365_35372071
seq2: B6Ng01-234A09.b_47_754

seq1  GAATTCACAGTTGTGGGTCACATACCAACTATTTTCAACTGCTTGACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTTGTGGGTCACATACCAACTATTTTCAACTGCTTGACCTG  50

seq1  AACTAGGCCTGGGAGTCAGAGGAAAGTACTAGAGAGGGAGTCATGATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCCTGGGAGTCAGAGGAAAGTACTAGAGAGGGAGTCATGATTAC  100

seq1  TCAACAGGCTGGGGTGTTTGTTGCTCAGGCTCTAAGTGTATGCAACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGCTGGGGTGTTTGTTGCTCAGGCTCTAAGTGTATGCAACAGGA  150

seq1  AGGTGGGGACACAAGGTACTCACTAGAATGGCTTAGTACATTGTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGACACAAGGTACTCACTAGAATGGCTTAGTACATTGTCTTCCT  200

seq1  GGGACTGTGTGTTGAATCACTTGTCTGAACAGTTGCAGAAGGGCAGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTGTGTTGAATCACTTGTCTGAACAGTTGCAGAAGGGCAGGGGT  250

seq1  CTGGGGAACTAACCAGACTTGGCTGGTCAGTGAACTGCTTGACCCAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAACTAACCAGACTTGGCTGGTCAGTGAACTGCTTGACCCAAACT  300

seq1  CAAATCTGAGTGTCAGGATGATTCAGTAAGGTGGGCTCTTGATCCTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGAGTGTCAGGATGATTCAGTAAGGTGGGCTCTTGATCCTACAC  350

seq1  TAGGTTATTTGGCTACCGTAAAGGCTGTTCAACCCAAGCTAGACCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTATTTGGCTACCGTAAAGGCTGTTCAACCCAAGCTAGACCAGGGA  400

seq1  GTATTAGGAGGATACCCCAGGATATCTTACTAAACTGAGATGGTGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGGAGGATACCCCAGGATATCTTACTAAACTGAGATGGTGTCCAT  450

seq1  TCTGATTGACCCCAGTAGGCCAGGGAGTATGAAAATGGCTCTGGCTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGACCCCAGTAGGCCAGGGAGTATGAAAATGGCTCTGGCTGACC  500

seq1  TGGGAATTCACCATTGTGGGCTGCTGTACAGACTGTGTAACCCCAGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTCACCATTGTGGGCTGCTGTACAGACTGTGTAACCCCAGCTGC  550

seq1  ACCTGGCAATATGAGAATAGATTCTTACTCACCAGTCTGGGCTGGTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCAATATGAGAATAGATTCTTACTCACCAGTCTGGGCTGGTGCCA  600

seq1  ACCTGCTTAACATGAGTGTGGTAATGGATGAGGATGGGTGGGGTTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTAACATGAGTGTGGTAATGGATGAGGATGGGTGGGGTTCTGTG  650

seq1  TACTCCTCCAGACTGAGCTGGTAGTCAGACCACCTCCTATTGT-GAGATC  699
      | ||| | ||||||||| |||||| | |||| || || | | | ||||||
seq2  TCCTCATACAGACTGAGATGGTAGACTGACCTCCCCCCAATATAGAGATC  700

seq1  ATTGCTAT  707
      ||||||||
seq2  ATTGCTAT  708