BAC Information

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BAC

Clone NameB6Ng01-235H18
ChromosomeX (Build37)
Map Location 55,706,353 - 55,707,478
singlet/doubletsinglet
Overlap genenone
Upstream geneGm364, Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
Downstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235H18.bB6Ng01-235H18.g
ACCGA046950GA046951
length1,1201,233
definitionB6Ng01-235H18.b B6Ng01-235H18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacacaccatcttaacttatgccacttcttctcaatgatggatca
agaatgatattgatatcagaacattggaagttttcagtttatgcatataa
gctcttaaacacagctcctactatcagaattctgagataatttcctgaaa
gaaataggctatgtcctcaaagtatagaatggatccagatgtgggtatgt
atggtttgcaatgttctctccatgattttgacgacctacccaacatccca
actctatccctgtagactctcagctgcttgagagtcactttaccgttggc
ttaagcagaggtgttcttgtgagccatagtccagtccgtatacctggagc
tatatacaaccagtctgcactcttctttctggaagatgttcttcctgtat
gacaaatgtccagtccaggcctaattcatgaatgtaaatacacgtagtta
ttgaggctcagaacctggcccagattctaatatgaattatttaagcaaga
accttctcagtataagcatgttgagttatttttaccctactacactatca
tagtatgtaattagaaatgtaagcgagccgggcgtggtggcacacgcctt
taatctcagcactcgggaagcagaggcaggcagatttctgagttcgaggc
cagcctggtctacagagtgagttctaggacagccagggctacacagagaa
accctgtctcaaaaaaaaaaaaaaaaaaagaaatgtaagcgagtctattt
ataaaaatagacacaatctatatatttttaacacattatccttagaccct
ttgatgatttcatccaaccaacatttgttatatagtaaggtcctgttctt
ggaactcaaggggaaataattatttttggtactaactattttatttaata
tttagcaccatccccccaggtagctttaagactgacacatgcaagtcaag
tagggaaatgattaaagttctgaggttttcatctcaggagaaacattctc
tgcttcaagtcttagagtttatttttctaatgatgtcaaaattgagagct
tctttaagtggatggtagagaagactctctttcttatccatgagtctcat
atgtagtatgaatctcatgg

gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccggtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatttgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctctgccttaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatctctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaaggacagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcgggagggtattcagctaaagcaaaaaatatcatggca
aagatggggttataaagaaggaaaagggttaggacatcaagaacagggaa
gggatagagcccatctcacctaatggaaaccaagacaggacagggtctgg
gttttcctttagcggccattgggggcagccacgaacccataccatgggaa
aacagggggacccagtggtggggtttcctcaatggcaccttattccctct
ggaaaaaactagaagctctgtggatccaactgggtagaaggaacaattaa
aactaaggcccataatgaaatcctctacctcacctttggaaatacttcca
aatttttgcactcagaaatagtcagggtacgtggaaacctgctctccatg
aacctcggagagctccttattatatgagagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_55706353_55707478
seq2: B6Ng01-235H18.b_47_1166 (reverse)

seq1  CCATGAGA-TCATACTACATAATGAGACTCATTGATAAGAAAGAGAGTCT  49
      |||||||| ||||||||||| ||||||||||| |||||||||||||||||
seq2  CCATGAGATTCATACTACAT-ATGAGACTCATGGATAAGAAAGAGAGTCT  49

seq1  TCTCTTACCAACCACTTTAAAGAAGCTCTCAATTTTTGACATCAATAGGA  99
      |||| ||||| |||| |||||||||||||||| ||||||||||| || ||
seq2  TCTC-TACCATCCAC-TTAAAGAAGCTCTCAA-TTTTGACATCATTA-GA  95

seq1  AAAATAAACTCT-AGACTTGGAGCAGAGAATGTTTTCTCCTGAGATGAAA  148
      |||||||||||| ||||||| ||||||||||| |||||||||||||| ||
seq2  AAAATAAACTCTAAGACTTGAAGCAGAGAATG-TTTCTCCTGAGATG-AA  143

seq1  AACCTCAGAACTTTTAATCATTTCCCTACTTGACTTGCATGTTGTCAGTC  198
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AACCTCAGAAC-TTTAATCATTTCCCTACTTGACTTGCATG-TGTCAGTC  191

seq1  TTAAAGCTACCTGGGGGGATGGTGCTAAATATTAAATAAAATAGTTAGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTACCTGGGGGGATGGTGCTAAATATTAAATAAAATAGTTAGTA  241

seq1  CC-AAAATAATTATTTCCCCTTGAGTTCCAAGAACAGGACCTTACTATAT  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAATTATTTCCCCTTGAGTTCCAAGAACAGGACCTTACTATAT  291

seq1  AACAAATGTTGGTTGGATGAAATCATCAAAGGGTCTAAGGATAATGTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGTTGGTTGGATGAAATCATCAAAGGGTCTAAGGATAATGTGTT  341

seq1  AAAAATATATAGATTGTGTCTATTTTTATAAATAGACTCGCTTACATTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATATAGATTGTGTCTATTTTTATAAATAGACTCGCTTACATTTC  391

seq1  TTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  441

seq1  TCCTAGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGC  491

seq1  CTGCCTCTGCTTCCCGAGTGCTGAGATTAAAGGCGTGTGCCACCACGCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCTTCCCGAGTGCTGAGATTAAAGGCGTGTGCCACCACGCCC  541

seq1  GGCTCGCTTACATTTCTAATTACATACTATGATAGTGTAGTAGGGTAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCTTACATTTCTAATTACATACTATGATAGTGTAGTAGGGTAAAA  591

seq1  ATAACTCAACATGCTTATACTGAGAAGGTTCTTGCTTAAATAATTCATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAACATGCTTATACTGAGAAGGTTCTTGCTTAAATAATTCATAT  641

seq1  TAGAATCTGGGCCAGGTTCTGAGCCTCAATAACTACGTGTATTTACATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTGGGCCAGGTTCTGAGCCTCAATAACTACGTGTATTTACATTC  691

seq1  ATGAATTAGGCCTGGACTGGACATTTGTCATACAGGAAGAACATCTTCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAGGCCTGGACTGGACATTTGTCATACAGGAAGAACATCTTCCA  741

seq1  GAAAGAAGAGTGCAGACTGGTTGTATATAGCTCCAGGTATACGGACTGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAGTGCAGACTGGTTGTATATAGCTCCAGGTATACGGACTGGA  791

seq1  CTATGGCTCACAAGAACACCTCTGCTTAAGCCAACGGTAAAGTGACTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTCACAAGAACACCTCTGCTTAAGCCAACGGTAAAGTGACTCTC  841

seq1  AAGCAGCTGAGAGTCTACAGGGATAGAGTTGGGATGTTGGGTAGGTCGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGAGAGTCTACAGGGATAGAGTTGGGATGTTGGGTAGGTCGTC  891

seq1  AAAATCATGGAGAGAACATTGCAAACCATACATACCCACATCTGGATCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGGAGAGAACATTGCAAACCATACATACCCACATCTGGATCCA  941

seq1  TTCTATACTTTGAGGACATAGCCTATTTCTTTCAGGAAATTATCTCAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACTTTGAGGACATAGCCTATTTCTTTCAGGAAATTATCTCAGAA  991

seq1  TTCTGATAGTAGGAGCTGTGTTTAAGAGCTTATATGCATAAACTGAAAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAGTAGGAGCTGTGTTTAAGAGCTTATATGCATAAACTGAAAAC  1041

seq1  TTCCAATGTTCTGATATCAATATCATTCTTGATCCATCATTGAGAAGAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTTCTGATATCAATATCATTCTTGATCCATCATTGAGAAGAAG  1091

seq1  TGGCATAAGTTAAGATGGTGTGTGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  TGGCATAAGTTAAGATGGTGTGTGAATTC  1120


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