BAC Information

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BAC

Clone NameB6Ng01-235M17
ChromosomeX (Build37)
Map Location 8,450,012 - 8,451,172
singlet/doubletsinglet
Overlap geneEG436188
Upstream geneOtud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480
Downstream geneB630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3, 1700054O13Rik, 4930557A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235M17.bB6Ng01-235M17.g
ACCGA047179GA047180
length1,1581,181
definitionB6Ng01-235M17.b B6Ng01-235M17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcagggaactgatggaggaaatgcggtaagaacggaatgttgg
agcccagggttccatgcaggaagtacatcaccaaagggatgtactaaata
tccccactatagtatgatgattcctcctcccccatcccctgcattgctta
ctcccggttctgtttacctgctgatacttgcattcctctggatacctgag
ctttcccttatatctagactactgtctactgtgcagttgtttctctaaaa
aaaaaatggctaaccacttcaaatctttctcctctgtcttccttagtcat
tctaacctgggacctctttataataaacccataacatttatattatttat
taaaggacagcattagagttgaaattattcctatatgtactctttctcca
aagacccaagagcttgttttctgtgaaattcttatgaataatagcaaaac
agtctgcatgtgattagagtttatagtgctctttaaagggttcccaagtg
cttctgttaggaaggcttctctactcaaattgcatgtgcctccactcccc
cttaatgctatgtagactttgcattctgaggactgctctgtcaataatgt
cctgctcagaatgactgagacctttattctggcaagtcaatgtttcatgg
actttgggaccagcattaatacttcaactgcatattttccttatgttttc
ttcttaaacatttataaaaattaattttaagtcatattacaaaggaatgg
cttcccccacagcccacagtcagtgttatcctaaatggagaacaatgtga
agcagtccctctaaaaacataaacaagtcaggctgtccactgtccccact
ccttttccctatagttcctgaagcagtaactgtagacaaactacttcaat
ttaatcaagggatcaatcaattaataaaatactatagtactaagcaaata
tgcacaaaactctggtgcagccaggtttcataattcatactaatggaata
aacttccagattaacacaactcatagaagggaggcaatttcatcacctcc
agtttctgctatagatgggacatctggaccaaaataaagaaacagaatac
ttcagaatcatggaactctttttatcaagggaccaaggagaattcctacg
gagtattc
gaattcaaggcccatacataaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaatggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctgaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggct
tgactctaactaaggaagtggaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctgtactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtcctgg
cacaactggttgttatcatgtaagaagaatgccaatcgatccatacttat
ctctgtactaagtcaaatctaaatggatcaaagaacttcacataacagag
acactgaaacttatagagagaaggtggggaaaagcttgaagaaatgggca
caggaaaattttggaacgaacgcaatgcttgtgcgtagaaatcggattga
caaagtgggaacctattgtgaaaacttccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_8450012_8451172
seq2: B6Ng01-235M17.b_47_1204 (reverse)

seq1  GAATACTCTGTA-GATATCTCTTTGGTCCTTTTGAT-AAAAGAGTTCATT  48
      |||||||| ||| ||  |||| |||||||  ||||| ||||||||||  |
seq2  GAATACTCCGTAGGAATTCTCCTTGGTCC-CTTGATAAAAAGAGTTCCAT  49

seq1  GAATTCTGAAGTA-TCTGTTTCTTTATTTTTGGTCCAGATGTCCCATCTA  97
      | ||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  G-ATTCTGAAGTATTCTGTTTCTTTA-TTTTGGTCCAGATGTCCCATCTA  97

seq1  TAGCAGAAACTGGA-GTGATGAAATTGCCT-CCTCTTATGAAGTTTGTGT  145
      |||||||||||||| ||||||||||||||| |||  |||||   ||||||
seq2  TAGCAGAAACTGGAGGTGATGAAATTGCCTCCCTTCTATGA--GTTGTGT  145

seq1  TAATCTGGAGTTTTAATTCCATTAGTATGATTTTATGAAA-CTGGCTGCA  194
      |||||||||  ||| |||||||||||||||  |||||||| |||||||||
seq2  TAATCTGGAAGTTT-ATTCCATTAGTATGA-ATTATGAAACCTGGCTGCA  193

seq1  CCAGAGTTTTGTGCATATTTGCTTAGTACTATAGTATTTTATTAATTGAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTTTGTGCATATTTGCTTAGTACTATAGTATTTTATTAATTGAT  243

seq1  TGATCCCTTGATTAAATTGAAGTAGGTTTGTCTACAGTTACTGCTTCAGG  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGATCCCTTGATTAAATTGAAGTA-GTTTGTCTACAGTTACTGCTTCAGG  292

seq1  AACTATAGGGAAAAGGAGTGGGGACAGTGGACAGCCCTGACTTGTTTATG  344
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACTATAGGGAAAAGGAGTGGGGACAGTGGACAG-CCTGACTTGTTTATG  341

seq1  TTTTTAGAGGGACTGCTTCACATTGTTCTCCATTTAGGATAACACTGACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAGGGACTGCTTCACATTGTTCTCCATTTAGGATAACACTGACT  391

seq1  GTGGGCTGTGGGGGAAGCCATTCCTTTGTAATATGACTTAAAATTAATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGTGGGGGAAGCCATTCCTTTGTAATATGACTTAAAATTAATTT  441

seq1  TTATAAATGTTTAAGAAGAAAACATAAGGAAAATATGCAGTTGAAGTATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGTTTAAGAAGAAAACATAAGGAAAATATGCAGTTGAAGTATT  491

seq1  AATGCTGGTCCCAAAGTCCATGAAACATTGACTTGCCAGAATAAAGGTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGTCCCAAAGTCCATGAAACATTGACTTGCCAGAATAAAGGTCT  541

seq1  CAGTCATTCTGAGCAGGACATTATTGACAGAGCAGTCCTCAGAATGCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTCTGAGCAGGACATTATTGACAGAGCAGTCCTCAGAATGCAAA  591

seq1  GTCTACATAGCATTAAGGGGGAGTGGAGGCACATGCAATTTGAGTAGAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATAGCATTAAGGGGGAGTGGAGGCACATGCAATTTGAGTAGAGA  641

seq1  AGCCTTCCTAACAGAAGCACTTGGGAACCCTTTAAAGAGCACTATAAACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCTAACAGAAGCACTTGGGAACCCTTTAAAGAGCACTATAAACT  691

seq1  CTAATCACATGCAGACTGTTTTGCTATTATTCATAAGAATTTCACAGAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCACATGCAGACTGTTTTGCTATTATTCATAAGAATTTCACAGAAA  741

seq1  ACAAGCTCTTGGGTCTTTGGAGAAAGAGTACATATAGGAATAATTTCAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCTTGGGTCTTTGGAGAAAGAGTACATATAGGAATAATTTCAAC  791

seq1  TCTAATGCTGTCCTTTAATAAATAATATAAATGTTATGGGTTTATTATAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCTGTCCTTTAATAAATAATATAAATGTTATGGGTTTATTATAA  841

seq1  AGAGGTCCCAGGTTAGAATGACTAAGGAAGACAGAGGAGAAAGATTTGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCCAGGTTAGAATGACTAAGGAAGACAGAGGAGAAAGATTTGAA  891

seq1  GTGGTTAGCCATTTTTTTTTTAGAGAAACAACTGCACAGTAGACAGTAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGCCATTTTTTTTTTAGAGAAACAACTGCACAGTAGACAGTAGT  941

seq1  CTAGATATAAGGGAAAGCTCAGGTATCCAGAGGAATGCAAGTATCAGCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATAAGGGAAAGCTCAGGTATCCAGAGGAATGCAAGTATCAGCAG  991

seq1  GTAAACAGAACCGGGAGTAAGCAATGCAGGGGATGGGGGAGGAGGAATCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAGAACCGGGAGTAAGCAATGCAGGGGATGGGGGAGGAGGAATCA  1041

seq1  TCATACTATAGTGGGGATATTTAGTACATCCCTTTGGTGATGTACTTCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTATAGTGGGGATATTTAGTACATCCCTTTGGTGATGTACTTCCT  1091

seq1  GCATGGAACCCTGGGCTCCAACATTCCGTTCTTACCGCATTTCCTCCATC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAACCCTGGGCTCCAACATTCCGTTCTTACCGCATTTCCTCCATC  1141

seq1  AGTTCCCTGAGGAATTC  1161
      |||||||||||||||||
seq2  AGTTCCCTGAGGAATTC  1158