BAC Information

Click to search

BAC

Clone NameB6Ng01-237N21
ChromosomeX (Build37)
Map Location 163,697,836 - 163,819,500
singlet/doubletdoublet
Overlap geneTlr8, Tlr7, Prps2
Upstream geneGpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x
Downstream geneEG627311, Frmpd4, EG667822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237N21.bB6Ng01-237N21.g
ACCGA048714GA048715
length7021,097
definitionB6Ng01-237N21.b B6Ng01-237N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,697,836 - 163,698,534)(163,818,406 - 163,819,500)
sequence
gaattcatgctcctctttagcctccggaatgccaggattacatatgcata
cctggcctgagttgtagatttttaaaaaaagatttaagtttatttttatt
tttaatatacttgtgggggatggtgggaggtgaatacatgtgagttctta
tgcccctggaggccagaagaggacatcagatctcctagagctagagttac
aggttgttgtgagttgccctagttgggtgcttggaaccgaacaacaatgc
atggttttaactgctgaataatctctccagcccttggtttgtttttagag
atagaacaaagcaattatttatcttgaatactgagcttcctggtgcccct
gttcattcttaggttttcttcagggcacccacaaaagattcaagtctgcc
tatatcacatggattttagacttcttgtaacactgaaaaggaacgtattt
ctgctgtttgagcactcacatttgtgacacagaacgtcatagtgtgtaaa
caagtatgattcggtggatcccactaccagggcaattggtcccaaatggt
ctctgcacagacataattcatgaactgacagcatgaaaatccctgaagag
gagggtggagctgcaagacccaaggacttgctgttgcctttcgtcagctg
gagaaaaccgaaactcatttattctaaaggaagcctattgaatcataaac
ac
gaattctatttagcacagttaaccaactatacagtgcacagtgacagata
accgttctatatttagtagcgcacgaattcattccgcaagttttacagaa
aaaaaaaaagtcattctccgtatttacaaaagttaacttagaaacggatt
gtagacacaaacgtcaaaactaaaactgaaatttccagaaggaagcacaa
aatcttgatgatggaatgaatcgagaatttggttgtgagattaagggcat
tttttttccttttggttgttttattttggtttggttttcgttttctggga
cagacttttgctatgtatttaggctggtattgaactcacccaggtagtag
tccaggtaggcttcgaactcacaggagaacccttgtttctacctcccaag
cattagaatttcgggtgtgtgtgtcatcagacccagttagattaatattg
atgacaaagatgatttttttctagaggttatgtgaatcccgtgtgacctt
ttctaggtggtaaactccatttacacagcttgggtgataatagaagaaac
ctgtggacaattcaggtgaaagaactgccactttgtttacttattgacat
tacatcctgattgaagtcccccctcctccaagccaccccctaaaataaat
taattaatgggggaacaaaaggaagtaatccaaaccttccaggagtcggc
aacaagaaaacaacaatgaaatgaactgtgacattgaattaagaacagtg
aaaaatttattttcataagttaaaaacaacaacaacaacaaaagaatgcc
actctggggttggggaatgtagttcagttggtagagttgcttgcaggagt
ttgcatgaagcccctgtgcagcatcagatcaggatatgctgggcacacac
tacgttctcagcccttgggtagaagaagccagagaagtggattcaagagc
atctttggctacatgagaaccatgtctattttttttttctagtacagagg
atgttatcccaggtcttttgtgtatgctaggcaacaagaagatcaccact
gagcttccatccccagccgccctttgtagactcaataaattggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163697836_163698534
seq2: B6Ng01-237N21.b_49_750

seq1  GAATTCATGCTCCTCTTTAGCCTCCGGAATGCCAGGATTACATATGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTCCTCTTTAGCCTCCGGAATGCCAGGATTACATATGCATA  50

seq1  CCTGGCCTGAGTTGTAGATTTTTAAAAAAAGATTTAAGTTTATTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGAGTTGTAGATTTTTAAAAAAAGATTTAAGTTTATTTTTATT  100

seq1  TTTAATATACTTGTGGGGGATGGTGGGAGGTGAATACATGTGAGTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATACTTGTGGGGGATGGTGGGAGGTGAATACATGTGAGTTCTTA  150

seq1  TGCCCCTGGAGGCCAGAAGAGGACATCAGATCTCCTAGAGCTAGAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTGGAGGCCAGAAGAGGACATCAGATCTCCTAGAGCTAGAGTTAC  200

seq1  AGGTTGTTGTGAGTTGCCCTAGTTGGGTGCTTGGAACCGAACAACAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTGTGAGTTGCCCTAGTTGGGTGCTTGGAACCGAACAACAATGC  250

seq1  ATGGTTTTAACTGCTGAATAATCTCTCCAGCCCTTGGTTTGTTTTTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAACTGCTGAATAATCTCTCCAGCCCTTGGTTTGTTTTTAGAG  300

seq1  ATAGAACAAAGCAATTATTTATCTTGAATACTGAGCTTCCTGGTGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAAAGCAATTATTTATCTTGAATACTGAGCTTCCTGGTGCCCCT  350

seq1  GTTCATTCTTAGGTTTTCTTCAGGGCACCCACAAAAGATTCAAGTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTTAGGTTTTCTTCAGGGCACCCACAAAAGATTCAAGTCTGCC  400

seq1  TATATCACATGGATTTTAGACTTCTTGTAACACTGAAAAGGAACGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACATGGATTTTAGACTTCTTGTAACACTGAAAAGGAACGTATTT  450

seq1  CTGCTGTTTGAGCACTCACATTTGTGACACAGAACGTCATAGTGTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTTGAGCACTCACATTTGTGACACAGAACGTCATAGTGTGTAAA  500

seq1  CAAGTATGATTCGGTGGATCCCACTACCAGGGCAATTGGTCCCAAATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGATTCGGTGGATCCCACTACCAGGGCAATTGGTCCCAAATGGT  550

seq1  CTCTGCACAGACATAATTCATGAACTGACAGCATGAAAATCCCTGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACAGACATAATTCATGAACTGACAGCATGAAAATCCCTGAAGAG  600

seq1  GAGGGTGGAGCTGCAGGACCCAAGGACTTGCTGTTGCC-TTCGTCAGCTG  649
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  GAGGGTGGAGCTGCAAGACCCAAGGACTTGCTGTTGCCTTTCGTCAGCTG  650

seq1  GAGAAAACCGAAACTCATTTA-TCTAAAGGAAGCCTA-TGAATCATAAAC  697
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GAGAAAACCGAAACTCATTTATTCTAAAGGAAGCCTATTGAATCATAAAC  700

seq1  AC  699
      ||
seq2  AC  702

seq1: chrX_163818406_163819500
seq2: B6Ng01-237N21.g_64_1160 (reverse)

seq1  CCCTCC-ATTTATTGAAGTCTACAAAGGGC-GCTGGGGATGG-AGCTCAG  47
      |||||| |||||||| |||||||||||||| ||||||||||| |||||||
seq2  CCCTCCAATTTATTG-AGTCTACAAAGGGCGGCTGGGGATGGAAGCTCAG  49

seq1  TGGTTGAATCTTCTTGTTGCCTAGCATACAC-AAAGACCTGGAAT-ACAT  95
      ||||   |||||||||||||||||||||||| |||||||||| || ||||
seq2  TGGT--GATCTTCTTGTTGCCTAGCATACACAAAAGACCTGGGATAACAT  97

seq1  CCTCTGTACTAGAAAAAAAAAATAGACATGG-TCTCATGTAGCCAAAGAT  144
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCTGTACTAGAAAAAAAAAATAGACATGGTTCTCATGTAGCCAAAGAT  147

seq1  GCTCTTGAATTCCCACTTCTCTGGCTTCTTCTACCCAAGGGCTGAGAACG  194
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAAT--CCACTTCTCTGGCTTCTTCTACCCAAGGGCTGAGAACG  195

seq1  TAGTGTGTG-CCAGCATATCCTGATCTGATGCTGCACAGGGGCTTCATGC  243
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTGCCCAGCATATCCTGATCTGATGCTGCACAGGGGCTTCATGC  245

seq1  AAACTCCTGCAAGCAACTCTACCAACTGAACTACATTCCCCAACCCCAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTGCAAGCAACTCTACCAACTGAACTACATTCCCCAACCCCAGA  295

seq1  GTGGCATTCTTTTGTTGTTGTTGTTGTTTTTAACTTATGAAAATAAATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTCTTTTGTTGTTGTTGTTGTTTTTAACTTATGAAAATAAATTT  345

seq1  TTCACTGTTCTTAATTCAATGTCACAGTTCATTTCATTGTTGTTTTCTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTCTTAATTCAATGTCACAGTTCATTTCATTGTTGTTTTCTTG  395

seq1  TTGCCGACTCCTGGAAGGTTTGGATTACTTCCTTTTGTTCCCCCATTAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGACTCCTGGAAGGTTTGGATTACTTCCTTTTGTTCCCCCATTAAT  445

seq1  TAATTTATTTTAGGGGGTGGCTTGGAGGAGGGGGGACTTCAATCAGGATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTTTAGGGGGTGGCTTGGAGGAGGGGGGACTTCAATCAGGATG  495

seq1  TAATGTCAATAAGTAAACAAAGTGGCAGTTCTTTCACCTGAATTGTCCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCAATAAGTAAACAAAGTGGCAGTTCTTTCACCTGAATTGTCCAC  545

seq1  AGGTTTCTTCTATTATCACCCAAGCTGTGTAAATGGAGTTTACCACCTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTCTATTATCACCCAAGCTGTGTAAATGGAGTTTACCACCTAG  595

seq1  AAAAGGTCACACGGGATTCACATAACCTCTAGAAAAAAATCATCTTTGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCACACGGGATTCACATAACCTCTAGAAAAAAATCATCTTTGTC  645

seq1  ATCAATATTAATCTAACTGGGTCTGATGACACACACACCCGAAATTCTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTAATCTAACTGGGTCTGATGACACACACACCCGAAATTCTAA  695

seq1  TGCTTGGGAGGTAGAAACAAGGGTTCTCCTGTGAGTTCGAAGCCTACCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGAGGTAGAAACAAGGGTTCTCCTGTGAGTTCGAAGCCTACCTG  745

seq1  GACTACTACCTGGGTGAGTTCAATACCAGCCTAAATACATAGCAAAAGTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTACCTGGGTGAGTTCAATACCAGCCTAAATACATAGCAAAAGTC  795

seq1  TGTCCCAGAAAACGAAAACCAAACCAAAATAAAACAACCAAAAGGAAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGAAAACGAAAACCAAACCAAAATAAAACAACCAAAAGGAAAAA  845

seq1  AAATGCCCTTAATCTCACAACCAAATTCTCGATTCATTCCATCATCAAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCTTAATCTCACAACCAAATTCTCGATTCATTCCATCATCAAGA  895

seq1  TTTTGTGCTTCCTTCTGGAAATTTCAGTTTTAGTTTTGACGTTTGTGTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCTTCCTTCTGGAAATTTCAGTTTTAGTTTTGACGTTTGTGTCT  945

seq1  ACAATCCGTTTCTAAGTTAACTTTTGTAAATACGGAGAATGACTTTTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCGTTTCTAAGTTAACTTTTGTAAATACGGAGAATGACTTTTTTT  995

seq1  TTTTCTGTAAAACTTGCGGAATGAATTCGTGCGCTACTAAATATAGAACG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTAAAACTTGCGGAATGAATTCGTGCGCTACTAAATATAGAACG  1045

seq1  GTTATCTGTCACTGTGCACTGTATAGTTGGTTAACTGTGCTAAATAGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGTCACTGTGCACTGTATAGTTGGTTAACTGTGCTAAATAGAAT  1095

seq1  TC  1095
      ||
seq2  TC  1097