BAC Information

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BAC

Clone NameB6Ng01-238F18
ChromosomeX (Build37)
Map Location 22,252,890 - 22,407,680
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc6a14, LOC100043180, LOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
Downstream geneKlhl13, EG635719, Wdr44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238F18.bB6Ng01-238F18.g
ACCGA049075GA049076
length1,1211,048
definitionB6Ng01-238F18.b B6Ng01-238F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,252,890 - 22,254,000)(22,406,635 - 22,407,680)
sequence
gaattctctaacagccaatttgttcttgttcccaaacccttgaagtgcct
attttataatttcacagagatgtaaccataggaactaagtggttagcaac
ataaaactttataattatgagggtatgttttcacctttttgcattatatt
gaaatgtatatggatttcaggtgctatacctcaaggactattggtttgtt
caaaatgaaaatgttgtcatatagctctccatttcctaaggtttcattgt
catttttaagaaaacatttactgggtacctgttgtgttccactgactata
ttagacaccgtaaaaatgaatgcaagaatttaaccactctcgtttctatc
cagaagcttaaaacatgaaagaacacagtatataacctttaggtacatta
gggagtttggtatacaaaaggtgccattagctaaatgagaaactgtccta
gttgtattcttgcagcaatgatttctgcataactggtagccaggactaat
ttcctatgcatattacttcttatcctagaaagggctatgaaaatgcaaat
gaaatgccttcaattcacagttatagcaataaatgaaaatctataaaata
gattaaggctttgaccaaggaaagcttatcaattgttctttcatttgcaa
atgacctaaaatgaattttaatcttcctttcatcttttcctctctgcctc
ccattctccctttcccctaacctcaatcatacgtctaacctagctatatc
tatatctagctgaatatgattactcatttttatttctatgtgtgaatgtg
gatactatgcatatatatatatatatatatatatacacatatacatatac
atacatatacacacatctataactcaaggggaagtgaatgatctatttta
tgtaggcatgtataaaatattttatgtttacatttgctaggagttgtaaa
tattcaaaattatttaccaagcatccttgatttatgaaagaagtctcagt
taagaaaaatgtttaattgccattatttaaatgttcaagccagtatttcc
aaatgggaaaaagcttatcttatccttttctaatagaataattaaaacga
aagccatacatttatgtttat

gaattctttcagttttcggatccatattaagtaaagtgtatactcttctt
cctatcatctacctgacacagataactgacattgtagaaattccaaaatg
aggtatttctgggtttatttagaacaaaccaaaggaattgcttagtcttt
tgaaaccctgttggtcagcaattcaagattctgtattgtactactcagta
attttgaattttctttctgatgtttgttattttcttttttttttttttat
tgtttgtttctagagacagggtctctccatagagccctggctgtcttgga
gctggctacataaatgagactgggattaaacacttgcgccactacaccta
gcctctatagactttcaaatgtagaaacgtccactgctttctatagaaga
aaaaagctctgctaaagccctgagactacccagggcatatatccatcact
catgttagtttactttcaaaacactttgtgcttgaagggaatgaaaatga
aataacagacacaacatgaataatctatactacagccaacgcatatatct
ttgactttaatgtgtagaatgagaatgcatctataatagtatggaattaa
acacctaaaactgaaatcaatatatgtcaaaaattaaaaatggcaccaaa
agtcaattcaataattctaacagaagccaacttacagagtatgtaaggac
acgggaaagccacagcagaggcaaataagagagaatagaagatggaagag
aaagagtttgaaggaaagagaaaaaaagttagctagaaggaaaatgatat
tttgttcataaaaaggaaggagatgtacagattgtgctaggccacatgat
agaagctagctcactagggccacttaaaataacaactctgttggctgaga
tacacggatttttttttctttcctgtttaatatctttcaattttgtttat
tttttattgttctggattgctttgttatcagacacatgtgttgcagttgc
ccgtgcaaagcagaagagggcatagattttcttgtcgggagttacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_22252890_22254000
seq2: B6Ng01-238F18.b_45_1165

seq1  GAATTCTCTAACAGCCAATTTGTTCTTGTTCCCAAACCCTTGAAGTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACAGCCAATTTGTTCTTGTTCCCAAACCCTTGAAGTGCCT  50

seq1  ATTTTATAATTTCACAGAGATGTAACCATAGGAACTAAGTGGTTAGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATTTCACAGAGATGTAACCATAGGAACTAAGTGGTTAGCAAC  100

seq1  ATAAAACTTTATAATTATGAGGGTATGTTTTCACCTTTTTGCATTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTTATAATTATGAGGGTATGTTTTCACCTTTTTGCATTATATT  150

seq1  GAAATGTATATGGATTTCAGGTGCTATACCTCAAGGACTATTGGTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATATGGATTTCAGGTGCTATACCTCAAGGACTATTGGTTTGTT  200

seq1  CAAAATGAAAATGTTGTCATATAGCTCTCCATTTCCTAAGGTTTCATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAATGTTGTCATATAGCTCTCCATTTCCTAAGGTTTCATTGT  250

seq1  CATTTTTAAGAAAACATTTACTGGGTACCTGTTGTGTTCCACTGACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAGAAAACATTTACTGGGTACCTGTTGTGTTCCACTGACTATA  300

seq1  TTAGACACCGTAAAAATGAATGCAAGAATTTAACCACTCTCGTTTCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACCGTAAAAATGAATGCAAGAATTTAACCACTCTCGTTTCTATC  350

seq1  CAGAAGCTTAAAACATGAAAGAACACAGTATATAACCTTTAGGTACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTTAAAACATGAAAGAACACAGTATATAACCTTTAGGTACATTA  400

seq1  GGGAGTTTGGTATACAAAAGGTGCCATTAGCTAAATGAGAAACTGTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTGGTATACAAAAGGTGCCATTAGCTAAATGAGAAACTGTCCTA  450

seq1  GTTGTATTCTTGCAGCAATGATTTCTGCATAACTGGTAGCCAGGACTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTCTTGCAGCAATGATTTCTGCATAACTGGTAGCCAGGACTAAT  500

seq1  TTCCTATGCATATTACTTCTTATCCTAGAAAGGGCTATGAAAATGCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGCATATTACTTCTTATCCTAGAAAGGGCTATGAAAATGCAAAT  550

seq1  GAAATGCCTTCAATTCACAGTTATAGCAATAAATGAAAATCTATAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTTCAATTCACAGTTATAGCAATAAATGAAAATCTATAAAATA  600

seq1  GATTAAGGCTTTGACCAAGGAAAGCTTATCAATTGTTCTTTCATTTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGCTTTGACCAAGGAAAGCTTATCAATTGTTCTTTCATTTGCAA  650

seq1  ATGACCTAAAATGAATTTTAATCTTCCTTTCATCTTTTCCTCTCTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAAAATGAATTTTAATCTTCCTTTCATCTTTTCCTCTCTGCCTC  700

seq1  CCATTCTCCCTTTCCCCTAACCTCAATCATACGTCTAACCTAGCTATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCCCTTTCCCCTAACCTCAATCATACGTCTAACCTAGCTATATC  750

seq1  TATATCTAGCTGAATATGATTACTCATTTTTATTTCTATGTGTGAATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTAGCTGAATATGATTACTCATTTTTATTTCTATGTGTGAATGTG  800

seq1  GATACTATGCATATATATATATATATATATATATACACATATACATATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATGCATATATATATATATATATATATATACACATATACATATAC  850

seq1  ATACATATACACACATCTATAACTCAA-GGGAAGTGAATGATCTATTTTA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACATATACACACATCTATAACTCAAGGGGAAGTGAATGATCTATTTTA  900

seq1  TGTAGGCATGTATAAAATA-TTTATGTTTACATTTGCTAGGAGTTGTAAA  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTAGGCATGTATAAAATATTTTATGTTTACATTTGCTAGGAGTTGTAAA  950

seq1  TATTCAAAATTATTTACCAAGCATCCTTGATTTATGAAAGAAGTCTCAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAATTATTTACCAAGCATCCTTGATTTATGAAAGAAGTCTCAGT  1000

seq1  TAAGAAAAA-GGTTAAATGGCATTTATTAAATG-TCAAGCCCAGTATTT-  1045
      ||||||||| | |||| || ||||  ||||||| ||||| ||||||||| 
seq2  TAAGAAAAATGTTTAATTGCCATTATTTAAATGTTCAAG-CCAGTATTTC  1049

seq1  CAAAT-GGAAAAAGC-TATC-TATC--TTTCTAATAGATAAATTAAAACC  1090
      ||||| ||||||||| |||| ||||  |||||||||||  ||||||||| 
seq2  CAAATGGGAAAAAGCTTATCTTATCCTTTTCTAATAGAATAATTAAAACG  1099

seq1  AAAG-CATACATTTATGTTTAT  1111
      |||| |||||||||||||||||
seq2  AAAGCCATACATTTATGTTTAT  1121


seq1: chrX_22406635_22407680
seq2: B6Ng01-238F18.g_68_1115 (reverse)

seq1  GCTGTAACTCCCGTTCCAGGAAATCTATGCCCTCTTCTGGCTTGCACGGG  50
      |||||||||||||  | || |||||||||||||||||||  |||||||||
seq2  GCTGTAACTCCCG-ACAAGAAAATCTATGCCCTCTTCTGCTTTGCACGGG  49

seq1  C-ACTGC-ACACATGTTGTCTGATAACAAAGCACT-CAGA--CATATAAA  95
      | ||||| ||||||| ||||||||||||||||| | ||||   ||| |||
seq2  CAACTGCAACACATG-TGTCTGATAACAAAGCAATCCAGAACAATAAAAA  98

seq1  ATAAACAAAATTTGAAAGATATTAAAACAGGAAAAGAAAAAAAAATCGGT  145
      |||||||||| |||||||||||| ||||||| ||||||||||||||| ||
seq2  ATAAACAAAA-TTGAAAGATATT-AAACAGG-AAAGAAAAAAAAATCCGT  145

seq1  GTATCTCAGCC-ACAGAGTTGTTATTTTAAGTGGCCCTAGTGAGCTAGCT  194
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCAGCCAACAGAGTTGTTATTTTAAGTGGCCCTAGTGAGCTAGCT  195

seq1  TCTATCATGTGGCCTAGCACAATCTGTACATCTCCTTCCTTTTTATGAAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATGTGGCCTAGCACAATCTGTACATCTCCTTCCTTTTTATGAAC  245

seq1  -AAATATCATTTTCCTTCTAGCTAACTTTTTTTCTCTTTCCTTCAAACTC  293
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCATTTTCCTTCTAGCTAACTTTTTTTCTCTTTCCTTCAAACTC  295

seq1  TTTCTCTTCCATCTTCTATTCTCTCTTATTTGCCTCTGCTGTGGCTTTCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCCATCTTCTATTCTCTCTTATTTGCCTCTGCTGTGGCTTTCC  345

seq1  CGTGTCCTTACATACTCTGTAAGTTGGCTTCTGTTAGAATTATTGAATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTTACATACTCTGTAAGTTGGCTTCTGTTAGAATTATTGAATTG  395

seq1  ACTTTTGGTGCCATTTTTAATTTTTGACATATATTGATTTCAGTTTTAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGTGCCATTTTTAATTTTTGACATATATTGATTTCAGTTTTAGG  445

seq1  TGTTTAATTCCATACTATTATAGATGCATTCTCATTCTACACATTAAAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTCCATACTATTATAGATGCATTCTCATTCTACACATTAAAGT  495

seq1  CAAAGATATATGCGTTGGCTGTAGTATAGATTATTCATGTTGTGTCTGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATATGCGTTGGCTGTAGTATAGATTATTCATGTTGTGTCTGTT  545

seq1  ATTTCATTTTCATTCCCTTCAAGCACAAAGTGTTTTGAAAGTAAACTAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTTCATTCCCTTCAAGCACAAAGTGTTTTGAAAGTAAACTAAC  595

seq1  ATGAGTGATGGATATATGCCCTGGGTAGTCTCAGGGCTTTAGCAGAGCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGATGGATATATGCCCTGGGTAGTCTCAGGGCTTTAGCAGAGCTT  645

seq1  TTTTCTTCTATAGAAAGCAGTGGACGTTTCTACATTTGAAAGTCTATAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTATAGAAAGCAGTGGACGTTTCTACATTTGAAAGTCTATAGA  695

seq1  GGCTAGGTGTAGTGGCGCAAGTGTTTAATCCCAGTCTCATTTATGTAGCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGTGTAGTGGCGCAAGTGTTTAATCCCAGTCTCATTTATGTAGCC  745

seq1  AGCTCCAAGACAGCCAGGGCTCTATGGAGAGACCCTGTCTCTAGAAACAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAGACAGCCAGGGCTCTATGGAGAGACCCTGTCTCTAGAAACAA  795

seq1  ACAATAAAAAAAAAAAAAAGAAAATAACAAACATCAGAAAGAAAATTCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAAAAAAAAAAAAGAAAATAACAAACATCAGAAAGAAAATTCAA  845

seq1  AATTACTGAGTAGTACAATACAGAATCTTGAATTGCTGACCAACAGGGTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGAGTAGTACAATACAGAATCTTGAATTGCTGACCAACAGGGTT  895

seq1  TCAAAAGACTAAGCAATTCCTTTGGTTTGTTCTAAATAAACCCAGAAATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGACTAAGCAATTCCTTTGGTTTGTTCTAAATAAACCCAGAAATA  945

seq1  CCTCATTTTGGAATTTCTACAATGTCAGTTATCTGTGTCAGGTAGATGAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTGGAATTTCTACAATGTCAGTTATCTGTGTCAGGTAGATGAT  995

seq1  AGGAAGAAGAGTATACACTTTACTTAATATGGATCCGAAAACTGAAAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGAGTATACACTTTACTTAATATGGATCCGAAAACTGAAAGAA  1045

seq1  TTC  1046
      |||
seq2  TTC  1048


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