BAC Information

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BAC

Clone NameB6Ng01-239D09
ChromosomeX (Build37)
Map Location 32,187,976 - 32,188,786
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743, LOC385298, LOC100039460, LOC100040781
Downstream geneLOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585, LOC100039497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239D09.bB6Ng01-239D09.g
ACCGA049696GA049697
length1,1191,152
definitionB6Ng01-239D09.b B6Ng01-239D09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatttttccaagttttttcttctcaccatttactttgatgct
ggctactggtttgctgtagaattcttttatcatgtttaggtatgggcctt
gaattcctgatctttacaagacttttatcatgaatggatgttggatcttg
tcgaatgctttttctgcatctaacgagatgatcatatggtttttgtcttt
gagtttgtttatatagtggattacgttgatggatttccatatattaagcc
atacctgcatccctggaataaaacctacttggtcaggatggatgattgtt
ttaatgtgttcttggattcggttagtgagaattttattgaggatttttgc
atcgatattcataagggaatttggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatctgagtaattgtggattcataggatgagttg
ggtagactaccttctacttctattttgtggaatagtttgtgcagaactgg
aattagatcttctttgaaagtctgatagaactctgcactaaacccatctg
gtcctgggctttttttttggttgggagactattaaagactgcttctattt
ctttaggtgatatgggactgtttagatcgttaacttgatcctggtttaac
tttggtacctggtatctgtctagaaatttgtccattttgtccaggttttc
cagttttgttgagtatatccttatgtagaaggatatgatggtgttttgga
tcttcaggatctgttgttatgtctccctttcatttctgattttgttcatt
aggatgctttccctgtaccctctagtgagtcgggctaaggttttatctat
ctttgttgattttctcaaagaaccatctccttgtttgggttgattctttg
aatagtttcttcttgaatccactttggttgattttgggcccctgagtttg
attatttcctggtgtctactccttctggggtgaattttgctttccttttt
tctagaagcttttaggggtgttgtcaagctgctagtgtgttgctccgctc
tagtttctttggaggtactcgagcttagcagtttccctcctagaaaatgc
cttgaatatgtgatcctat
gaattcaatgaaaatgaaggcacaacatacccaaatttatgggacccaat
gaaagcagtgctaagaggaaagttcaaaatattatgagcctccataaaga
aattagaaagttcccataccagcaatttaaaagtaaacctgaaagcagta
ggaaaaaaaataagaagcaaggacacataacagaagtagagggtaggaaa
taataaaaatcagggctgaaatcaatctgttagaaacaaataaaacagta
caaagaatcaacaaaaccaagagctggttctttgagaaaattagcaagtt
agccaaacctttagccaaactaaccaaaagacagagagacaatacctgaa
taaacaaaatcagaaatgcaagtagagatctaacaagagacactgaacaa
attcaaagaatcattagatcttgcttcaacaacctgtattcatccaaaag
ggaaaaccttaatgaaacggatgattgtctagacagatatcacatatcaa
agttaaatcaagatcagctaaactatttaaacagccctataaccttaaag
aattagaagcagtcatcaaaagtctctcaacctaaaagcccagggccata
tggttttagtgcacaattctatatgacattcaaagaagagctaattctaa
cactcctcaaactatttcacaaaatagaaaccgagggtctactgccaaac
ttattctatgaagccatagccaccctgatttctaaaccacacaaagacta
aaaggaaaaaaaatttaaggacaatttcttttatgagcattgatgcaagc
atacttaataaagtactcacaaactgaatcttggaacgcatcaaaaacct
gatccatcaagaagaagtaggctagatcagtggcccaatacctgcccaaa
tgtaacagcctagttacctcccagaaggtccaaagtaaccaaagaaacag
ggactctctcctcaaatttccaccacaggctgggaacatgtacacagccc
agctgacaggggactttacccccccacttctactcaacccccaaggctcg
acttcttcgggcaccattcctcacaggtcatatcagtggcccatactgca
caaatacctacagccttgaacatcagagcttcatagttactaggggcaca
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_32187976_32188786
seq2: B6Ng01-239D09.g_439_1216

seq1  GAGATCTAACAAGAGACACTGAACAAATTCAAAGAATCATTAGATCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTAACAAGAGACACTGAACAAATTCAAAGAATCATTAGATCTTGC  50

seq1  TTCAATAACCTGTATTCATCCAAAAGGGAAAACCTTAATGAAATGGATGA  100
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCAACAACCTGTATTCATCCAAAAGGGAAAACCTTAATGAAACGGATGA  100

seq1  TTGTCTAGACAGATATCACATATCAAAGTTAAATCAAGATCAGCTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGACAGATATCACATATCAAAGTTAAATCAAGATCAGCTAAACT  150

seq1  ATTTAAACAGCCCTATAACCCTTAAAGAATTAGAAGCAGTCATCAAAAGT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTAAACAGCCCTATAA-CCTTAAAGAATTAGAAGCAGTCATCAAAAGT  199

seq1  CTCTCAACCAAAAAGCCCAGGGCCATATGGTTTTAGTGCACAATTCTATA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACCTAAAAGCCCAGGGCCATATGGTTTTAGTGCACAATTCTATA  249

seq1  TGACATTCAAAGAAGAGCTAATTCTAACACTCCTCAAACTATTTCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCAAAGAAGAGCTAATTCTAACACTCCTCAAACTATTTCACAAA  299

seq1  ATAGAAACCGAGGGTCTACTGCCAAACTTAATCTATGAAGCCATAGCCAC  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGAAACCGAGGGTCTACTGCCAAACTTATTCTATGAAGCCATAGCCAC  349

seq1  CCTAATTTCTAAACCACACAAAGACTAAAAGTAAAAGGAATTTAAGGACA  400
      ||| ||||||||||||||||||||||||||| ||||  ||||||||||||
seq2  CCTGATTTCTAAACCACACAAAGACTAAAAGGAAAAAAAATTTAAGGACA  399

seq1  ATTTCTTTTATGAACATTGATGCAAGAATACTTAATAAAGTACTCACAAA  450
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  ATTTCTTTTATGAGCATTGATGCAAGCATACTTAATAAAGTACTCACAAA  449

seq1  CTGAATCTTGGAACACATCAAAAACCTGATCCATCAAGAAGAAGTAGGCT  500
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGAATCTTGGAACGCATCAAAAACCTGATCCATCAAGAAGAAGTAGGCT  499

seq1  AGATCAGTGGCCCAATACCTGCCCAAATGTAACAGCCTAGTTACCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTGGCCCAATACCTGCCCAAATGTAACAGCCTAGTTACCTCCCA  549

seq1  GAAGGTCCAAAGTAACCAAAGAAAAAGGGGACTCTCTTCCTCAAATTTCC  600
      |||||||||||||||||||||||| | ||||||||| |||||||||||||
seq2  GAAGGTCCAAAGTAACCAAAGAAACA-GGGACTCTC-TCCTCAAATTTCC  597

seq1  A-CACAGGCT-GGAACATGTACACAGCCCAGCTACCAGGGGACTT--ACC  646
      | |||||||| ||||||||||||||||||||||  ||||||||||   ||
seq2  ACCACAGGCTGGGAACATGTACACAGCCCAGCTGACAGGGGACTTTACCC  647

seq1  CCCTACTTCTACCTCAACCCCCAA-GCTCCACTTTCCTTC-GGCACCTTT  694
      ||| ||||||| |||||||||||| |||| ||||  |||| ||||||  |
seq2  CCCCACTTCTA-CTCAACCCCCAAGGCTCGACTT--CTTCGGGCACC-AT  693

seq1  TCCTCATCAGGGTCAGATCAGTGGCCCAATACCTGCACAAATA-CTACAG  743
      |||||| || ||||| ||||||||||| ||| ||||||||||| ||||||
seq2  TCCTCA-CA-GGTCATATCAGTGGCCC-ATA-CTGCACAAATACCTACAG  739

seq1  CCTGGAAACATCCCAGGAGCTCCATTGTAACCAAGGGCACAGGACATCTT  793
      ||| | ||||||    ||||| ||| || || | |||||||||       
seq2  CCTTG-AACATC---AGAGCTTCATAGTTACTAGGGGCACAGG-------  778

seq1  AAGTAAAAGGGGCACAGG  811
                        
seq2  ------------------  778