BAC Information

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BAC

Clone NameB6Ng01-239E09
ChromosomeX (Build37)
Map Location 11,946,697 - 12,093,243
singlet/doubletdoublet
Overlap geneLOC628441
Upstream gene8430439B09Rik, LOC669520, Rpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946
Downstream geneAtp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E09.bB6Ng01-239E09.g
ACCGA049742GA049743
length1,1361,074
definitionB6Ng01-239E09.b B6Ng01-239E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,946,697 - 11,947,834)(12,092,149 - 12,093,243)
sequence
gaattctcacctatggatgaataggtttcctcttttagactgattctcaa
gtatattagttctttttctgttgctgtgataagaaaacaaaaatcataac
cagaagcaacttaagaaaggaagtttattttgtcttatggctaaccccag
gggcggagaaggcatgacagcaggagcggggagctgagaggtcacatctt
tacccacatgcaggaagcaaagacactgaactgaaagtggagcagagcta
taaactttcaaagattactcccagtgacaaactttctccaccaagacacc
acttcctaaaagccccaatatctccctaaacagtaccacctaagggggac
caagtcctcaaatgcatgagccattgggggacattctcattcagaccacc
aaacccagccaagtaacacaaatgaccacacccccatctctccagcctca
attcagtaacagaacaagagagcagagtaaacttcagtgttctgaaaaga
gaagggtgggagatgatcaactagagctatagagctctcagatcttagtg
tgcaggcttcttacctgcagacggagacagttccttatcaggcccgaagt
tttcttctagatggttattttactcttaccatcctgctctgccagatcta
ggtcttgaggacatctcttctagagggaaatattctcagctagtttcctt
ctcagagtaggaacccaagggttgtttcatatccatacctaactcaagaa
aagtttggcttgtttgatccaggctcaagatttctttgaagacacaagtc
cctttaaaaatataatgggcctctcaaatgttcacttctagacacttcag
gggctatatttaaaactcaagatatgctttaaacgtgtgtgtgtgtgtgt
gcacttgtgcttgagtttacatgcaccacgtgcacacagatgcctgttga
gaccagaaaaaggcattggatcccctggaactagacttcacaggtggtgt
gggtgctgggaaccaacccacgtttcaaatgaagaagtaagcactcttag
agccagaataccaccctcaatagccgcatacatgctcgcctcatcaatct
ccgattactgcttaatggcatttagtggcaacattt
gaattctgcagtctcctcaacagacacttgaaggacgctttccagaatca
gagttgtagcttcactcagaggccaggcagccagagtcattatcctatga
ggagtccttgtccctcaggaagccacctgcagatgatatctggtgtggtg
cttgtagagctgactgaatctccattggctccaggatctgggagggtcca
ccagcttcgtgcctcttgtctcacctcacccacccgctcacgctgtgtgg
gccttcccattcatcctgtgctctgtaattactgcttaatttcctccttc
cattagtattgaaaatgcctccaacgacttgattttcttgctttatttat
acgacagaaaagacgcttagaagcaaattatgcttgcctccatatatctc
tacctgtttatctcagtgtttacggagtgcctgccatggtggtatctggg
cacttagacagccccattagatcaaattcatgacagaagagagaccacca
ccaccaccctctcctcctcttcctctccctcctcttcctcctcttcccct
ctcccttttcctcctcctcttcttcctcctcttcctcttcctcctcctct
tccctctctctctccctccccctcctcctctgtataagcttcttgggtaa
cacacagaggatcaggggaagcaagaactgccagccttttgttctccagc
ccagagagagaggaatgatttttggcaaagaagcacatccccttctggag
ggaggcatggggagcttgcaaactaatttggaaaatctatcagagggtgg
gtttcaatatgttgggcatttaacatttgaaatgatttcagtttcattgc
tctccaaatagcaaattgagcccatttttcacaatgcgcttcatgcactg
aaagcttctaccagagatactagatgctcactcatctttctcagtctgga
gctacgagactcaagttcaacactgctgagcactctttgtgtctgactac
agctgctaagactcagctgcctagctgacttatagaaaggcaggatctct
gactctctgtgctccccacccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_11946697_11947834
seq2: B6Ng01-239E09.b_42_1177

seq1  GAATTCTCACCTATGGATGAATAGGTTTCCTCTTTTAGACTGATTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTATGGATGAATAGGTTTCCTCTTTTAGACTGATTCTCAA  50

seq1  GTATATTAGTTCTTTTTCTGTTGCTGTGATAAGAAAACAAAAATCATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAGTTCTTTTTCTGTTGCTGTGATAAGAAAACAAAAATCATAAC  100

seq1  CAGAAGCAACTTAAGAAAGGAAGTTTATTTTGTCTTATGGCTAACCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAACTTAAGAAAGGAAGTTTATTTTGTCTTATGGCTAACCCCAG  150

seq1  GGGCGGAGAAGGCATGACAGCAGGAGCGGGGAGCTGAGAGGTCACATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGAGAAGGCATGACAGCAGGAGCGGGGAGCTGAGAGGTCACATCTT  200

seq1  TACCCACATGCAGGAAGCAAAGACACTGAACTGAAAGTGGAGCAGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACATGCAGGAAGCAAAGACACTGAACTGAAAGTGGAGCAGAGCTA  250

seq1  TAAACTTTCAAAGATTACTCCCAGTGACAAACTTTCTCCACCAAGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCAAAGATTACTCCCAGTGACAAACTTTCTCCACCAAGACACC  300

seq1  ACTTCCTAAAAGCCCCAATATCTCCCTAAACAGTACCACCTAAGGGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAAAAGCCCCAATATCTCCCTAAACAGTACCACCTAAGGGGGAC  350

seq1  CAAGTCCTCAAATGCATGAGCCATTGGGGGACATTCTCATTCAGACCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTCAAATGCATGAGCCATTGGGGGACATTCTCATTCAGACCACC  400

seq1  AAACCCAGCCAAGTAACACAAATGACCACACCCCCATCTCTCCAGCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGCCAAGTAACACAAATGACCACACCCCCATCTCTCCAGCCTCA  450

seq1  ATTCAGTAACAGAACAAGAGAGCAGAGTAAACTTCAGTGTTCTGAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAACAGAACAAGAGAGCAGAGTAAACTTCAGTGTTCTGAAAAGA  500

seq1  GAAGGGTGGGAGATGATCAACTAGAGCTATAGAGCTCTCAGATCTTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGGGAGATGATCAACTAGAGCTATAGAGCTCTCAGATCTTAGTG  550

seq1  TGCAGGCTTCTTACCTGCAGACGGAGACAGTTCCTTATCAGGCCCGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTTCTTACCTGCAGACGGAGACAGTTCCTTATCAGGCCCGAAGT  600

seq1  TTTCTTCTAGATGGTTATTTTACTCTTACCATCCTGCTCTGCCAGATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTAGATGGTTATTTTACTCTTACCATCCTGCTCTGCCAGATCTA  650

seq1  GGTCTTGAGGACATCTCTTCTAGAGGGAAATATTCTCAGCTAGTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAGGACATCTCTTCTAGAGGGAAATATTCTCAGCTAGTTTCCTT  700

seq1  CTCAGAGTAGGAACCCAAGGGTTGTTTCATATCCATACCTAACTCAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTAGGAACCCAAGGGTTGTTTCATATCCATACCTAACTCAAGAA  750

seq1  AAGTTTGGCTTGTTTGATCCAGGCTCAAGATTTCTTTGAAGACACAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGGCTTGTTTGATCCAGGCTCAAGATTTCTTTGAAGACACAAGTC  800

seq1  CC-TTAAAAATATAATGGGCCTCTCAAATGTTCACTTCTAGACACTTCAG  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAATATAATGGGCCTCTCAAATGTTCACTTCTAGACACTTCAG  850

seq1  GGGCTATATTTAAAACTCAAGATATGCTTTAAACGTGTGTGTGTGTGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATATTTAAAACTCAAGATATGCTTTAAACGTGTGTGTGTGTGTGT  900

seq1  GCACTTGTGCTTGAGTTTACATGCACCACGTGCACACAGATGCCTGTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTGCTTGAGTTTACATGCACCACGTGCACACAGATGCCTGTTGA  950

seq1  GACCAGAAAAAGGCATTGGATCCCCTGGAACTAGAC-TCACAGGTGGTTG  998
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GACCAGAAAAAGGCATTGGATCCCCTGGAACTAGACTTCACAGGTGG-TG  999

seq1  TGGGTGCTGGGAACCAAACCCACGTTTCCAATGAAAGAAGTAAGCACTCT  1048
      ||||||||||||||| |||||||||||| |||| ||||||||||||||||
seq2  TGGGTGCTGGGAACC-AACCCACGTTTCAAATG-AAGAAGTAAGCACTCT  1047

seq1  TAGAGCCAGAATA-CACCTTCAATAGCTGCCATACTTCCTCGCCTCTTC-  1096
      ||||||||||||| |||| |||||||| | ||||| | |||||||| || 
seq2  TAGAGCCAGAATACCACCCTCAATAGCCG-CATACATGCTCGCCTCATCA  1096

seq1  ATCT-CGGTTACCTTGCTTTTTTGCATTTAGTGGCAACCATTT  1138
      |||| || ||||  |||||  | |||||||||||||| |||||
seq2  ATCTCCGATTAC--TGCTTAATGGCATTTAGTGGCAA-CATTT  1136

seq1: chrX_12092149_12093243
seq2: B6Ng01-239E09.g_65_1138 (reverse)

seq1  AAAGGGTGGGGAGCACCAAGAAGAAGCCAGAGATCTTG-CTTTCTAT-AG  48
      ||||||||||||||||  ||    || |||||||| || |||||||| ||
seq2  AAAGGGTGGGGAGCACAGAG----AGTCAGAGATCCTGCCTTTCTATAAG  46

seq1  TCAGGCCCTAGGGAGCTGGGGTCTTAAGCAGCCTTGTAGGCAGGACCACA  98
      ||||   ||||| |||| | ||||| ||||||  ||||| |||   ||||
seq2  TCAG---CTAGGCAGCT-GAGTCTT-AGCAGC--TGTAGTCAG--ACACA  87

seq1  AAGAGGTGCTCAGCAGTGTTTGAACTTGGAGTCCTCCGTAGCTCCAGACT  148
      |||| ||||||||||||| |||||||| |||||   ||||||||||||||
seq2  AAGA-GTGCTCAGCAGTG-TTGAACTT-GAGTC--TCGTAGCTCCAGACT  132

seq1  GAGAAAGATGGAGTGAGCATCCAGTATCTTCTGGTAGAAGCCTTTCAGTG  198
      ||||||||| ||||||||||| |||||| ||||||||||| |||||||||
seq2  GAGAAAGAT-GAGTGAGCATCTAGTATC-TCTGGTAGAAG-CTTTCAGTG  179

seq1  CATGAAGCCGCATTTGTGAAAAATGGGCTCAATTTGCTATTTGGAGAGCA  248
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  CATGAAG-CGCA-TTGTGAAAAATGGGCTCAATTTGCTATTTGGAGAGCA  227

seq1  ATGAAACTGAAATCATTTCAAATGTTAAATGCCCAACATATTGAAACCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTGAAATCATTTCAAATGTTAAATGCCCAACATATTGAAACCCA  277

seq1  CCCTCTGATAGATTTTCCAAATTAGTTTGCAAGCTCCCCATGCCTCCCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGATAGATTTTCCAAATTAGTTTGCAAGCTCCCCATGCCTCCCTC  327

seq1  CAGAAGGGGATGTGCTTCTTTGCCAAAAATCATTCCTCTCTCTCTGGGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGGATGTGCTTCTTTGCCAAAAATCATTCCTCTCTCTCTGGGCT  377

seq1  GGAGAACAAAAGGCTGGCAGTTCTTGCTTCCCCTGATCCTCTGTGTGTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAAAAGGCTGGCAGTTCTTGCTTCCCCTGATCCTCTGTGTGTTA  427

seq1  CCCAAGAAGCTTATACAGAGGAGGAGGGGGAGGGAGAGAGAGAGGGAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAGCTTATACAGAGGAGGAGGGGGAGGGAGAGAGAGAGGGAAGA  477

seq1  GGAGGAGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAGGAAAAGGGAGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAGGAAAAGGGAGAGG  527

seq1  GGAAGAGGAGGAAGAGGAGGGAGAGGAAGAGGAGGAGAGGGTGGTGGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAGGAAGAGGAGGGAGAGGAAGAGGAGGAGAGGGTGGTGGTGG  577

seq1  TGGTCTCTCTTCTGTCATGAATTTGATCTAATGGGGCTGTCTAAGTGCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCTTCTGTCATGAATTTGATCTAATGGGGCTGTCTAAGTGCCC  627

seq1  AGATACCACCATGGCAGGCACTCCGTAAACACTGAGATAAACAGGTAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCACCATGGCAGGCACTCCGTAAACACTGAGATAAACAGGTAGAG  677

seq1  ATATATGGAGGCAAGCATAATTTGCTTCTAAGCGTCTTTTCTGTCGTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGAGGCAAGCATAATTTGCTTCTAAGCGTCTTTTCTGTCGTATA  727

seq1  AATAAAGCAAGAAAATCAAGTCGTTGGAGGCATTTTCAATACTAATGGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAAGAAAATCAAGTCGTTGGAGGCATTTTCAATACTAATGGAA  777

seq1  GGAGGAAATTAAGCAGTAATTACAGAGCACAGGATGAATGGGAAGGCCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAATTAAGCAGTAATTACAGAGCACAGGATGAATGGGAAGGCCCA  827

seq1  CACAGCGTGAGCGGGTGGGTGAGGTGAGACAAGAGGCACGAAGCTGGTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGTGAGCGGGTGGGTGAGGTGAGACAAGAGGCACGAAGCTGGTGG  877

seq1  ACCCTCCCAGATCCTGGAGCCAATGGAGATTCAGTCAGCTCTACAAGCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCAGATCCTGGAGCCAATGGAGATTCAGTCAGCTCTACAAGCAC  927

seq1  CACACCAGATATCATCTGCAGGTGGCTTCCTGAGGGACAAGGACTCCTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGATATCATCTGCAGGTGGCTTCCTGAGGGACAAGGACTCCTCA  977

seq1  TAGGATAATGACTCTGGCTGCCTGGCCTCTGAGTGAAGCTACAACTCTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAATGACTCTGGCTGCCTGGCCTCTGAGTGAAGCTACAACTCTGA  1027

seq1  TTCTGGAAAGCGTCCTTCAAGTGTCTGTTGAGGAGACTGCAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAAGCGTCCTTCAAGTGTCTGTTGAGGAGACTGCAGAATTC  1074