BAC Information

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BAC

Clone NameB6Ng01-239M05
ChromosomeX (Build37)
Map Location 126,363,429 - 126,520,208
singlet/doubletdoublet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239M05.bB6Ng01-239M05.g
ACCGA050105GA050106
length2921,115
definitionB6Ng01-239M05.b B6Ng01-239M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,363,429 - 126,363,720)(126,519,092 - 126,520,208)
sequence
tttgcttctgttttggaagctgtgtgctacttgttttggattattgctgg
gctttgaacaaaaagtaaaacaacaacagaaacctccaatgtgtcaagtt
aacattgacacatttattttaaagagacattaaaatagttaaggattttg
tatagattctttctatgaagtgaaaaatgacaaaatgtcttctattacct
atctgaaagtatcaaaggatttagagtcaggcagagggagaactgaatga
tggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttg

gaattcactggaagctggcagtctggaaattaaaaccaccaagttcaaat
tcagttgtgttgttttctattgagtgaattaatctccctatgacattatg
gacataataaaatatattttaatgatgtccttttatgaggtttaattgag
tgaatacatgtaatgtattcggaacaaaatgagataacaagtaccctatg
aatcaattcagtcccaactgtcctagacattcattctttagataaaaagg
tatgttttaatcgtatatatgtatttcttgatgacaaatgcatggtacgt
acagaatatacatgaatcatctgacagatggcacagtgctgaaggagtaa
agtaaatgtattaaagtttcataaagtaatttgcatatatttattacaat
tttaatgataccaatctggaggtgctgtaattgaaagaacaatataacta
ttgaattaaattacaaaaaactatgaggtagaattaagacaatctacaat
aacatagtcatgaaatttaaaataacactcaaaatggaatatagccatag
taattcctatttccatgaaggaactaagtgataaatatcagatttcatat
aatatgtgacataaaagaaaactattgtttgaaaatggatatccatagca
attttcctttttccacttctgctggaaattttaaaattattttgggggaa
aagtacccctagtctaggagattgtaaattgttataggctaaatatatca
aaatagaagtaaaattacttaaatagttgtgtttcacttcaaatacaaag
ttatataaattcagtatactttattaatggagaacaactatttacttcat
acaaatactaaattacaaaaaaagagaaattattttcagctacttataaa
atttaaattgatcagaaaaaaaaaaactttagatttctgcatactaagaa
gggtcccagtctaattaattacactaacttattaatacatattcccaagt
aataacacatagtatataaacactagcacataattatatatagtccacat
gggaaactgatagtttattttaatagattatgatctgaaaaggcctgata
caaatatagttatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_126363429_126363720
seq2: B6Ng01-239M05.b_48_339

seq1  TTTGCTTCTGTTTTGGAAGCTGTGTGCTACTTGTTTTGGATTATTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTGTTTTGGAAGCTGTGTGCTACTTGTTTTGGATTATTGCTGG  50

seq1  GCTTTGAACAAAAAGTAAAACAACAACAGAAACCTCCAATGTGTCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAACAAAAAGTAAAACAACAACAGAAACCTCCAATGTGTCAAGTT  100

seq1  AACATTGACACATTTATTTTAAAGAGACATTAAAATAGTTAAGGATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGACACATTTATTTTAAAGAGACATTAAAATAGTTAAGGATTTTG  150

seq1  TATAGATTCTTTCTATGAAGTGAAAAATGACAAAATGTCTTCTATTACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTCTTTCTATGAAGTGAAAAATGACAAAATGTCTTCTATTACCT  200

seq1  ATCTGAAAGTATCAAAGGATTTAGAGTCAGGCAGAGGGAGAACTGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGTATCAAAGGATTTAGAGTCAGGCAGAGGGAGAACTGAATGA  250

seq1  TGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTG  292
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTG  292


seq1: chrX_126519092_126520208
seq2: B6Ng01-239M05.g_65_1179 (reverse)

seq1  ACATAATTATATTTGTTATCA-GCTTTTTCAGATTCAATAATCTATTAAA  49
      |||||| |||||||| ||||| || |||||||||   |||||||||||||
seq2  ACATAACTATATTTG-TATCAGGCCTTTTCAGAT--CATAATCTATTAAA  47

seq1  ATAAAACTATCAGTTT-CCATGGTGACTATATTATAATTATGTGCTAGTG  98
      || ||||||||||||| |||||  ||||||| ||||||||||||||||||
seq2  AT-AAACTATCAGTTTCCCATGTGGACTATA-TATAATTATGTGCTAGTG  95

seq1  TTTATATACTATGTGTTATTTACTTGGGAATATGTATTAATAAGTTAGTG  148
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTATATACTATGTGTTA-TTACTTGGGAATATGTATTAATAAGTTAGTG  144

seq1  TAATTAATTAGACT-GGACCCTTCTTAGTATGCAGAAATCTAAAG-TTTT  196
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TAATTAATTAGACTGGGACCCTTCTTAGTATGCAGAAATCTAAAGTTTTT  194

seq1  TTTTTTCTGATCAATTTAAATTTTATAAGTAGCTGAAAATAATTTCTCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGATCAATTTAAATTTTATAAGTAGCTGAAAATAATTTCTCTT  244

seq1  TTTTTGTAATTTAGTATTTGTATGAAGTAAATAGTTGTTCTCCATTAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAATTTAGTATTTGTATGAAGTAAATAGTTGTTCTCCATTAATA  294

seq1  AAGTATACTGAATTTATATAACTTTGTATTTGAAGTGAAACACAACTATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACTGAATTTATATAACTTTGTATTTGAAGTGAAACACAACTATT  344

seq1  TAAGTAATTTTACTTCTATTTTGATATATTTAGCCTATAACAATTTACAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTTTACTTCTATTTTGATATATTTAGCCTATAACAATTTACAA  394

seq1  TCTCCTAGACTAGGGGTACTTTTCCCCCAAAATAATTTTAAAATTTCCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGACTAGGGGTACTTTTCCCCCAAAATAATTTTAAAATTTCCAG  444

seq1  CAGAAGTGGAAAAAGGAAAATTGCTATGGATATCCATTTTCAAACAATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGGAAAAAGGAAAATTGCTATGGATATCCATTTTCAAACAATAG  494

seq1  TTTTCTTTTATGTCACATATTATATGAAATCTGATATTTATCACTTAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTATGTCACATATTATATGAAATCTGATATTTATCACTTAGTT  544

seq1  CCTTCATGGAAATAGGAATTACTATGGCTATATTCCATTTTGAGTGTTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGGAAATAGGAATTACTATGGCTATATTCCATTTTGAGTGTTAT  594

seq1  TTTAAATTTCATGACTATGTTATTGTAGATTGTCTTAATTCTACCTCATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTCATGACTATGTTATTGTAGATTGTCTTAATTCTACCTCATA  644

seq1  GTTTTTTGTAATTTAATTCAATAGTTATATTGTTCTTTCAATTACAGCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTAATTTAATTCAATAGTTATATTGTTCTTTCAATTACAGCAC  694

seq1  CTCCAGATTGGTATCATTAAAATTGTAATAAATATATGCAAATTACTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATTGGTATCATTAAAATTGTAATAAATATATGCAAATTACTTTA  744

seq1  TGAAACTTTAATACATTTACTTTACTCCTTCAGCACTGTGCCATCTGTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTAATACATTTACTTTACTCCTTCAGCACTGTGCCATCTGTCA  794

seq1  GATGATTCATGTATATTCTGTACGTACCATGCATTTGTCATCAAGAAATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCATGTATATTCTGTACGTACCATGCATTTGTCATCAAGAAATA  844

seq1  CATATATACGATTAAAACATACCTTTTTATCTAAAGAATGAATGTCTAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACGATTAAAACATACCTTTTTATCTAAAGAATGAATGTCTAGG  894

seq1  ACAGTTGGGACTGAATTGATTCATAGGGTACTTGTTATCTCATTTTGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGGACTGAATTGATTCATAGGGTACTTGTTATCTCATTTTGTTC  944

seq1  CGAATACATTACATGTATTCACTCAATTAAACCTCATAAAAGGACATCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATACATTACATGTATTCACTCAATTAAACCTCATAAAAGGACATCAT  994

seq1  TAAAATATATTTTATTATGTCCATAATGTCATAGGGAGATTAATTCACTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATATTTTATTATGTCCATAATGTCATAGGGAGATTAATTCACTC  1044

seq1  AATAGAAAACAACACAACTGAATTTGAACTTGGTGGTTTTAATTTCCAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAACAACACAACTGAATTTGAACTTGGTGGTTTTAATTTCCAGA  1094

seq1  CTGCCAGCTTCCAGTGAATTC  1117
      |||||||||||||||||||||
seq2  CTGCCAGCTTCCAGTGAATTC  1115


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