BAC Information

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BAC

Clone NameB6Ng01-241L06
ChromosomeX (Build37)
Map Location 121,628,870 - 121,674,858
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942, LOC100039828, EG434843
Downstream geneEG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611, EG626048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241L06.bB6Ng01-241L06.g
ACCGA051549GA051550
length1,1151,174
definitionB6Ng01-241L06.b B6Ng01-241L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,628,870 - 121,629,997)(121,673,692 - 121,674,858)
sequence
gaattctaggctcttcatcttccatagaggcttctggacattccctttct
gaccaagggtctctaaaactgtctataactaggcaagggagtgtacaaaa
tgtgccatctactccaaagactgtgcaacatccaacttattgccagaaag
gtatgagattttctcccctttctgaaccttctggacaaagatccccagct
tcctcatgggatattgggccgttactacctagccagacatatcaaaaatc
catttcatattcaccagcagatgttacacactcaccatctgtactaggta
ctcaggggcatcctctatctagtaaagactctcaaggatatgtgctaacc
tctcaaaagtgtaaggacctttccacagctgcagatgggactttgcctgt
gcaaagatctttgtcatccacccaaatgaatctagaaccttcggcagatt
acacagggatattgggcttgagaaaatgtaaacacacagagactacctcg
ggcccgttgcctctagtgagggagaatacaaaatcttctacatctactct
gcctactctaggacatttgccaccaccacctcgagaacctggtagacatt
catcttttactcaaggagcgtgcagaaacattcccatctggtcccaggaa
cctagcacatttgcaatcagcccaggggcctctgacaatttccatctcaa
cccaggcaatgacacatatctctggatctgctgaaggggctctactgcat
tcagctccttcctcagcagtttcagaaacaaatgaatattctccatctac
ccaagggacttcagacactcccagatgtgctggaccgcacctggatctta
ctacatcactacaggtgtccccatcatctttgagatctgagcaaaaaact
gtgggaccttgctcatctgaagggactaaatctaaaggaaacaactgtag
ggttttctgcatctgctcaggaactagagagcattcctatcagacagcca
cagtagaatgccatgtctgcaaagcagtctgtggaaaattgctcccatca
gtacttagggtctcgcaatcactcggtggtctcagagtctttggacatct
gatccgaagctctgg
gaattcaaaaattctccaagtattaattgtcatttcattggtgagatgaa
atatttgaattcagattctactttctgaaaaaaaaattccacctatctct
tttatttatttttatttttgctctttctttcccagaagtatttgctgtgg
gcaatttctgaatctttaaagttttgcaacactggctggattggctctag
actttcctcaccatcaaatttggattcagttttgtcttcttggctcagtt
gtttattttccattcatctttcttattactttgttctttcatgtgaattc
acagctggtcacttgatattaagtaactaatttggttccttttttggcaa
aaaaaatatcagtcactgtatttataataaattttagattaataaagtca
gtggcctttataaaaattataaactgaattgtagtgggtttgacctaatg
ctgcttacattataattttctgcatgtacaacactgagggattctgctct
gagttggttttgattggtaaataaagattcaaccaggtaatggctggcca
gggcagacagaggtaggacttttaaggttccagagcttaaaacagagagg
aagtagtacaaaggagatccatcaggctgggagaagaagaggtgaaatgc
catacctgagaagagtggagggcaggagtcatagccagcattttaaggtg
ctggaagagtatgacccagtttggcagctctctggttccagggcaacaaa
ggtaacatatagaagttagtaagtaataagctggattgtcagtgggaggt
tgattaaccacatggaggctagaaaatggcccaactgttacactgtttaa
agcataacaaaatataacatttctgtgagtttttttttttttcataaggg
agtgcaaatcattggggcatgtaaacaggaacatgccactatgatttaat
acataaaaaatattgtaacactgaatattaataaaaaataggttcaggga
gtactaattgaattttgtacttgtataatttaaatatatcaatatacata
tacagtgagttaattgttcatatttctttaactcattataaaataccata
aatgtatcagtaatagatgaattttcctaatagttggaatcagtcactat
cttttatcgtataaaaccatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_121628870_121629997
seq2: B6Ng01-241L06.b_46_1160

seq1  GAATTCTAGGCTCTTCATCTTCCATAGAGGCTTCTGGACATTCCCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCTCTTCATCTTCCATAGAGGCTTCTGGACATTCCCTTTCT  50

seq1  GACCAAGGGTCTCTAAAACTGTCTATAACTAGGCAAGGGAGTGTACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGGTCTCTAAAACTGTCTATAACTAGGCAAGGGAGTGTACAAAA  100

seq1  TGTGCCATCTACTCCAAAGACTGTGCAACATCCAACTTATTGCCAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATCTACTCCAAAGACTGTGCAACATCCAACTTATTGCCAGAAAG  150

seq1  GTATGAGATTTTCTCCCCTTTCTGAACCTTCTGGACAAAGATCCCCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGATTTTCTCCCCTTTCTGAACCTTCTGGACAAAGATCCCCAGCT  200

seq1  TCCTCATGGGATATTGGGCCGTTACTACCTAGCCAGACATATCAAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGGGATATTGGGCCGTTACTACCTAGCCAGACATATCAAAAATC  250

seq1  CATTTCATATTCACCAGCAGATGTTACACACTCACCATCTGTACTAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATATTCACCAGCAGATGTTACACACTCACCATCTGTACTAGGTA  300

seq1  CTCAGGGGCATCCTCTATCTAGTAAAGACTCTCAAGGATATGTGCTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGCATCCTCTATCTAGTAAAGACTCTCAAGGATATGTGCTAACC  350

seq1  TCTCAAAAGTGTAAGGACCTTTCCACAGCTGCAGATGGGACTTTGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGTGTAAGGACCTTTCCACAGCTGCAGATGGGACTTTGCCTGT  400

seq1  GCAAAGATCTTTGTCATCCACCCAAATGAATCTAGAACCTTCGGCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATCTTTGTCATCCACCCAAATGAATCTAGAACCTTCGGCAGATT  450

seq1  ACACAGGGATATTGGGCTTGAGAAAATGTAAACACACAGAGACTACCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGATATTGGGCTTGAGAAAATGTAAACACACAGAGACTACCTCG  500

seq1  GGCCCGTTGCCTCTAGTGAGGGAGAATACAAAATCTTCTACATCTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGTTGCCTCTAGTGAGGGAGAATACAAAATCTTCTACATCTACTCT  550

seq1  GCCTACTCTAGGACATTTGCCACCACCACCTCGAGAACCTGGTAGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCTAGGACATTTGCCACCACCACCTCGAGAACCTGGTAGACATT  600

seq1  CATCTTTTACTCAAGGAG-GTGCAGAAACATTCCCATCTGGTCCCAGGAA  649
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATCTTTTACTCAAGGAGCGTGCAGAAACATTCCCATCTGGTCCCAGGAA  650

seq1  CCTAGCACATTTGCAATCAGCCCAGGGGCCTCTGACAATTTCCATCTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACATTTGCAATCAGCCCAGGGGCCTCTGACAATTTCCATCTCAA  700

seq1  CCCAGGCAATGACCCATATCTCTGGATCTGCTGAAGGGGCTCTACTGCAT  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAATGACACATATCTCTGGATCTGCTGAAGGGGCTCTACTGCAT  750

seq1  TCAGCTCCTTCCTCAGCAGTTTCAGAAACAAATGAATATTCTCCATCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTTCCTCAGCAGTTTCAGAAACAAATGAATATTCTCCATCTAC  800

seq1  CCAAGGGACTTCAGACACTCCCAGATGTGCTGGACCGCACCTGGATCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGACTTCAGACACTCCCAGATGTGCTGGACCGCACCTGGATCTTA  850

seq1  CTACATCACTACAGGTGTCCCCATCATCTTTGAGATCTGAGCAAAAAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCACTACAGGTGTCCCCATCATCTTTGAGATCTGAGCAAAAAACT  900

seq1  GTGGGACCTTGCTCATCTGAAGGGACTAAATCT-AAGGAAACAACTGTAG  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGGGACCTTGCTCATCTGAAGGGACTAAATCTAAAGGAAACAACTGTAG  950

seq1  GGTTTTCTGCATCTGCTCAGGGAACTAGAGAGCATTCCTTATCAGGACAA  998
      ||||||||||||||||||| |||||||||||||||||| ||||| ||| |
seq2  GGTTTTCTGCATCTGCTCA-GGAACTAGAGAGCATTCC-TATCA-GAC-A  996

seq1  GCCACAGTAGGAATGCCCATGTCTGCAAAGCAGTCTGTGGAAAATTTGCT  1048
      ||||||||| ||||| |||||||||||||||||||||||||||| |||| 
seq2  GCCACAGTA-GAATG-CCATGTCTGCAAAGCAGTCTGTGGAAAA-TTGC-  1042

seq1  TCCCATTCCAGTACCTTTAGGGTCTCCGCAAATCACTCGGGTGGTCTCAG  1098
      ||||||  ||||||  ||||||||| ||| |||||||| |||||||||||
seq2  TCCCAT--CAGTAC--TTAGGGTCT-CGC-AATCACTC-GGTGGTCTCAG  1085

seq1  AGTCTTT-GACATCTGATCAGAAGCCTCTGG  1128
      ||||||| ||||||||||| |||| ||||||
seq2  AGTCTTTGGACATCTGATCCGAAG-CTCTGG  1115

seq1: chrX_121673692_121674858
seq2: B6Ng01-241L06.g_67_1240 (reverse)

seq1  ATACAT-GTTTTATACGTATAAAAAATAGTGAACTGATTACAACTAT--A  47
      |||||| |||||||||| |||||| |||||| ||||||| |||||||   
seq2  ATACATGGTTTTATACG-ATAAAAGATAGTG-ACTGATTCCAACTATTAG  48

seq1  GAAATATCATCTATTACTTGATACATTTATGGTATTTTATAATGAGTTTA  97
      ||||  ||||||||||| |||||||||||||||||||||||||||||| |
seq2  GAAAATTCATCTATTAC-TGATACATTTATGGTATTTTATAATGAGTTAA  97

seq1  AAGAATATTGACAATTAACTCACTGTATATGTATA-TGATAATATTAAAT  146
      |  |||||  ||||||||||||||||||||||||| |||||   ||||||
seq2  AGAAATATGAACAATTAACTCACTGTATATGTATATTGATATATTTAAAT  147

seq1  ATAACAAGTACAAAATTC-ATTAGTACT-CCTGAACTTATTTTTTATT-A  193
         ||||||||||||||| ||||||||| ||||||| ||||||||||| |
seq2  TATACAAGTACAAAATTCAATTAGTACTCCCTGAACCTATTTTTTATTAA  197

seq1  TATTCAGTGTAACAATA-TTTTTATGTA-TAAATCATAGTGGCATGTTCC  241
      |||||||||| |||||| |||||||||| |||||||||||||||||||||
seq2  TATTCAGTGTTACAATATTTTTTATGTATTAAATCATAGTGGCATGTTCC  247

seq1  TG-TTACATGCCCCAATGATTTGCACTCCCTTATGAAAAAAAAAAAAACT  290
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATGCCCCAATGATTTGCACTCCCTTATGAAAAAAAAAAAAACT  297

seq1  CACAGAAATGTTATATTTTGTTATGCTTTAAACAGTGTAACAGTTGGGCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATGTTATATTTTGTTATGCTTTAAACAGTGTAACAGTTGGGCC  347

seq1  ATTTTCTAGCCTCCATGTGGTTAATCAACCTCCCACTGACAATCCAGCTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGCCTCCATGTGGTTAATCAACCTCCCACTGACAATCCAGCTT  397

seq1  ATTACTTACTAACTTCTATATGTTACCTTTGTTGCCCTGGAACCAGAGAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTACTAACTTCTATATGTTACCTTTGTTGCCCTGGAACCAGAGAG  447

seq1  CTGCCAAACTGGGTCATACTCTTCCAGCACCTTAAAATGCTGGCTATGAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAACTGGGTCATACTCTTCCAGCACCTTAAAATGCTGGCTATGAC  497

seq1  TCCTGCCCTCCACTCTTCTCAGGTATGGCATTTCACCTCTTCTTCTCCCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCTCCACTCTTCTCAGGTATGGCATTTCACCTCTTCTTCTCCCA  547

seq1  GCCTGATGGATCTCCTTTGTACTACTTCCTCTCTGTTTTAAGCTCTGGAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGGATCTCCTTTGTACTACTTCCTCTCTGTTTTAAGCTCTGGAA  597

seq1  CCTTAAAAGTCCTACCTCTGTCTGCCCTGGCCAGCCATTACCTGGTTGAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAGTCCTACCTCTGTCTGCCCTGGCCAGCCATTACCTGGTTGAA  647

seq1  TCTTTATTTACCAATCAAAACCAACTCAGAGCAGAATCCCTCAGTGTTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTACCAATCAAAACCAACTCAGAGCAGAATCCCTCAGTGTTGT  697

seq1  ACATGCAGAAAATTATAATGTAAGCAGCATTAGGTCAAACCCACTACAAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGAAAATTATAATGTAAGCAGCATTAGGTCAAACCCACTACAAT  747

seq1  TCAGTTTATAATTTTTATAAAGGCCACTGACTTTATTAATCTAAAATTTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTATAATTTTTATAAAGGCCACTGACTTTATTAATCTAAAATTTA  797

seq1  TTATAAATACAGTGACTGATATTTTTTTTGCCAAAAAAGGAACCAAATTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATACAGTGACTGATATTTTTTTTGCCAAAAAAGGAACCAAATTA  847

seq1  GTTACTTAATATCAAGTGACCAGCTGTGAATTCACATGAAAGAACAAAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAATATCAAGTGACCAGCTGTGAATTCACATGAAAGAACAAAGT  897

seq1  AATAAGAAAGATGAATGGAAAATAAACAACTGAGCCAAGAAGACAAAACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAAGATGAATGGAAAATAAACAACTGAGCCAAGAAGACAAAACT  947

seq1  GAATCCAAATTTGATGGTGAGGAAAGTCTAGAGCCAATCCAGCCAGTGTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAATTTGATGGTGAGGAAAGTCTAGAGCCAATCCAGCCAGTGTT  997

seq1  GCAAAACTTTAAAGATTCAGAAATTGCCCACAGCAAATACTTCTGGGAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTTTAAAGATTCAGAAATTGCCCACAGCAAATACTTCTGGGAAA  1047

seq1  GAAAGAGCAAAAATAAAAATAAATAAAAGAGATAGGTGGAATTTTTTTTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCAAAAATAAAAATAAATAAAAGAGATAGGTGGAATTTTTTTTT  1097

seq1  CAGAAAGTAGAATCTGAATTCAAATATTTCATCTCACCAATGAAATGACA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTAGAATCTGAATTCAAATATTTCATCTCACCAATGAAATGACA  1147

seq1  ATTAATACTTGGAGAATTTTTGAATTC  1167
      |||||||||||||||||||||||||||
seq2  ATTAATACTTGGAGAATTTTTGAATTC  1174