BAC Information

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BAC

Clone NameB6Ng01-243G05
ChromosomeX (Build37)
Map Location 125,036,241 - 125,164,408
singlet/doubletdoublet
Overlap geneLOC100040538
Upstream gene4930412D23Rik, LOC385523, LOC100040516, Mdm4-ps, EG237030
Downstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243G05.bB6Ng01-243G05.g
ACCGA052785GA052786
length1,1341,152
definitionB6Ng01-243G05.b B6Ng01-243G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,036,241 - 125,037,389)(125,163,259 - 125,164,408)
sequence
gaattcatattgttattagattctagtttggaaaagggcaaataatctgt
tttatgctgtaataatgaaaaactattttgcactaatctcaactacatga
tatagcattgcatggtcatgaaagataaagaaaaaatatatttcattcgg
ttttgaaaccttagatctaagaaaatgcttgatgcatagaattttctgag
ccagtgccattgaggcaaccaaacaataagcacatactttattccaaatt
caattttcagaaaccattcacaaaaacacctatatttgtagaactgtttt
tgaagacagcatgattgtacaacagtaaattatctcttaattatctttct
caatataattcagctatcatttaaagaaatagtttacaatcctattggtt
tcgtgaatttgatttctcatggctgatttccttgaaattcaaagggggaa
aaaacccacccaattctgtgaaggtttacctatttgaggactagggcaga
tgaaatgtgctagtataggaatagagcaaaacaaaacaacaagcaaactt
gtttgtctatgcatgaatttatttaagttggttgtatgctcctggtgaga
ttgacagtattctgggtccctatctcaatgtacttagatctaaggggaaa
aggcaaaaagtataccaatgtataaaacctaatatgaaactgagattact
gtattgatgcagggttgtagtagaatatagcttttcaggataataagtag
tacccccattgagaactgaaagcaatgtgtgcaggggcactgaagcagga
gagagtttaacctgtacaaacagcataaaacaagcaagggtgactgtgca
caaaatgaatgggtgtgaggaaagcatacagtgagaggagagaagaagca
gatgctacggcttacagaaccaaagaattttagaataggttccaatgaga
tcaaaagcctgtcatcagtccattttaaagagaaagtacaatatcatttt
aaaagttaacaaagattagatcatggaaatattaaatgtaagttcagcat
tcctagaacaaatccatctttcgttatttcaagtgaagaaaaaatgttct
gcagcatcctacaagagtatattgtaactttaac

gaattcatttaatttacagttcaagaaagttaagagctcatcttggtggg
gtggtacaaaagcaaaatagagacatagcagcagaagcagaaaactgtga
acttgtatcttgaactatagaaggggtgcaagtctttaaatgcatctccc
aaactccctaagacacttggtaaccaattgttcaagtaactgattttaag
gaggttgctttcatttaaaccactctatacacttgtgaccattaatcttg
aatgttaacttgattggatatggaattatctaagaagcatggctcttagg
tgggtctgtaaggatataacaagaaaacattaactggacaggagaaatcc
tgctcaagagaaatgacattaaagaactttgacttaataaataaaaatat
agtcatgaaaaatttaaaatgttttaggactaatagaaagtaaaacagta
aaccagagctaaaggaaaagaccttcaacagtgtgaagggaaatgtatag
ctattaatatgtatctataatgtgatgaaaactcctagaaaacacttttt
ctaatctataaagagctagaaacaccaaactagattcaaagtttgtagat
ataaagaaaaattttatgtatataaagcagtgaaatgaaaattcaacata
atcatataaatttccaagtgttcaaaaacaattgacaaatctttacttaa
catagataagtgtcataataaattatgcatagcattataatcaaaaatcc
acgtgggtattcttagtaattttacaacattttaaattatatgataataa
attggaatagctagatataataaatagttttttttacagctccaaactat
accaacattgaaccacaaagaactagaatatctagctagatatagaaata
aagttgataggtaaaattatcctagcaaaaggagccaggagttatatagc
tccattagaaaattctactacagatttctagaatttcataccagtcttta
cttaagtcatccttaagcttaaagaaagtcaatactttgtgggggttctg
tgatattacgtagccctcaaaacaaaggccagacaaaaaacatccaagag
aaaagaaacaattagttatactcgaatttgcctatggaatattgatggaa
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_125036241_125037389
seq2: B6Ng01-243G05.b_49_1182

seq1  GAATTCATATTGTTATTAGATTCTAGTTTGGAAAAGGGCAAATAATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTGTTATTAGATTCTAGTTTGGAAAAGGGCAAATAATCTGT  50

seq1  TTTATGCTGTAATAATGAAAAACTATTTTGCACTAATCTCAACTACATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTGTAATAATGAAAAACTATTTTGCACTAATCTCAACTACATGA  100

seq1  TATAGCATTGCATGGTCATGAAAGATAAAGAAAAAATATATTTCATTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATTGCATGGTCATGAAAGATAAAGAAAAAATATATTTCATTCGG  150

seq1  TTTTGAAACCTTAGATCTAAGAAAATGCTTGATGCATAGAATTTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACCTTAGATCTAAGAAAATGCTTGATGCATAGAATTTTCTGAG  200

seq1  CCAGTGCCATTGAGGCAACCAAACAATAAGCACATACTTTATTCCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCATTGAGGCAACCAAACAATAAGCACATACTTTATTCCAAATT  250

seq1  CAATTTTCAGAAACCATTCACAAAAACACCTATATTTGTAGAACTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCAGAAACCATTCACAAAAACACCTATATTTGTAGAACTGTTTT  300

seq1  TGAAGACAGCATGATTGTACAACAGTAAATTATCTCTTAATTATCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCATGATTGTACAACAGTAAATTATCTCTTAATTATCTTTCT  350

seq1  CAATATAATTCAGCTATCATTTAAAGAAATAGTTTACAATCCTATTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATTCAGCTATCATTTAAAGAAATAGTTTACAATCCTATTGGTT  400

seq1  TCGTGAATTTGATTTCTCATGGCTGATTTCCTTGAAATTCAAAGGGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAATTTGATTTCTCATGGCTGATTTCCTTGAAATTCAAAGGGGGAA  450

seq1  AAAACCCACCCAATTCTGTGAAGGTTTACCTATTTGAGGACTAGGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCACCCAATTCTGTGAAGGTTTACCTATTTGAGGACTAGGGCAGA  500

seq1  TGAAATGTGCTAGTATAGGAATAGAGCAAAACAAAACAACAAGCAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGCTAGTATAGGAATAGAGCAAAACAAAACAACAAGCAAACTT  550

seq1  GTTTGTCTATGCATGAATTTATTTAAGTTGGTTGTATGCTCCTGGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTATGCATGAATTTATTTAAGTTGGTTGTATGCTCCTGGTGAGA  600

seq1  TTGACAGTATTCTGGGTCCCTATCTCAATGTACTTAGATCTAAGGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTATTCTGGGTCCCTATCTCAATGTACTTAGATCTAAGGGGAAA  650

seq1  AGGCAAAAAGTATACCAATGTATAAAACCTAATATGAAACTGAGATTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAAGTATACCAATGTATAAAACCTAATATGAAACTGAGATTACT  700

seq1  GTATTGATGCAGGGTTGTAGTAGAATATAGCTTTTCAGGATAATAAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATGCAGGGTTGTAGTAGAATATAGCTTTTCAGGATAATAAGTAG  750

seq1  TACCCCCATTGAGAACTGAAAGCAATGTGTGCAGGGGCACTGAAGCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCATTGAGAACTGAAAGCAATGTGTGCAGGGGCACTGAAGCAGGA  800

seq1  GAGAGTTTAACCTGTACAAACAGCATAAAACAAGCAAGGGTGACTGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTAACCTGTACAAACAGCATAAAACAAGCAAGGGTGACTGTGCA  850

seq1  CAAAATGAATGGGTGTGAGGAAAGCATACAGTGAGAGGAGAGAAGAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAATGGGTGTGAGGAAAGCATACAGTGAGAGGAGAGAAGAAGCA  900

seq1  GATGCTACGGCTTACAGAACCAAAGAATTTTAGAATAGGTTCCAATGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACGGCTTACAGAACCAAAGAATTTTAGAATAGGTTCCAATGAGA  950

seq1  TCAAAAGCCTGTCATCAGTCCATTTTAAAGAGAAAAGTAACAATATCATT  1000
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TCAAAAGCCTGTCATCAGTCCATTTTAAAGAG-AAAGT-ACAATATCATT  998

seq1  TTAAAAGTTAACAAAGATTTAGGATCATTGGAAAATATTTAAATGTAAAG  1050
      |||||||||||||||||||   ||||||  | ||||| |||||||| |||
seq2  TTAAAAGTTAACAAAGATT--AGATCAT--GGAAATA-TTAAATGT-AAG  1042

seq1  TTCAGCATTTCCTTAAGACAAATCCAATCTTTCCGTTTATTTCAAGTGAA  1100
      |||||||||  | ||  |||||||| |||||||   ||||||||||||||
seq2  TTCAGCATT--CCTAGAACAAATCC-ATCTTTC--GTTATTTCAAGTGAA  1087

seq1  GAAAAAAATGTTCTGCAGCATTCTACAAGGAGGTATATTGT-ACTTTAAC  1149
      | ||||||||||||||||||| |||||||   ||||||||| ||||||||
seq2  G-AAAAAATGTTCTGCAGCATCCTACAAG--AGTATATTGTAACTTTAAC  1134


seq1: chrX_125163259_125164408
seq2: B6Ng01-243G05.g_66_1217 (reverse)

seq1  CATT-CATCAATATT-CATA-GCAAATATCGAGTATAACT-ATTGTTTTT  46
      |||| |||||||||| |||| |||||| |||||||||||| ||||||   
seq2  CATTCCATCAATATTCCATAGGCAAAT-TCGAGTATAACTAATTGTT---  46

seq1  CTTTTTTCTCTTTGATG-TTTTTGTCTGG-CTTTGTTTTGAGGGCTACGT  94
       | ||||||||| |||| ||||||||||| ||||||||||||||||||| 
seq2  -TCTTTTCTCTTGGATGTTTTTTGTCTGGCCTTTGTTTTGAGGGCTACG-  94

seq1  TAATATCACAGAA-CCCCACAAAGTATTGACTTTCTTTAAGCTTAAAGGA  143
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  TAATATCACAGAACCCCCACAAAGTATTGACTTTCTTTAAGCTT-AAGGA  143

seq1  TGACTTAAGTAAAGACTGGTATG-AATTCTAGAAATCTGTAGTAGAATTT  192
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGACTTAAGTAAAGACTGGTATGAAATTCTAGAAATCTGTAGTAGAATTT  193

seq1  TCTAATGGAGCTATATAACTCCTGGCTCCTTTTGCTAGGATAATTTTACC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGAGCTATATAACTCCTGGCTCCTTTTGCTAGGATAATTTTACC  243

seq1  TATCAACTTTATTTCTATATCTAGCTAGATATTCTAGTTCTTTGTGGTTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACTTTATTTCTATATCTAGCTAGATATTCTAGTTCTTTGTGGTTC  293

seq1  AATGTTGGTATAGTTTGGAGCTGT-AAAAAAACTATTTATTATATCTAGC  341
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGTTGGTATAGTTTGGAGCTGTAAAAAAAACTATTTATTATATCTAGC  343

seq1  TATTCCAATTTATTATCATATAATTTAAAATGTTGTAAAATTACTAAGAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAATTTATTATCATATAATTTAAAATGTTGTAAAATTACTAAGAA  393

seq1  TACCCACGTGGATTTTTGATTATAATGCTATGCATAATTTATTATGACAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACGTGGATTTTTGATTATAATGCTATGCATAATTTATTATGACAC  443

seq1  TTATCTATGTTAAGTAAAGATTTGTCAATTGTTTTTGAACACTTGGAAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATGTTAAGTAAAGATTTGTCAATTGTTTTTGAACACTTGGAAAT  493

seq1  TTATATGATTATGTTGAATTTTCATTTCACTGCTTTATATACATAAAATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGATTATGTTGAATTTTCATTTCACTGCTTTATATACATAAAATT  543

seq1  TTTCTTTATATCTACAAACTTTGAATCTAGTTTGGTGTTTCTAGCTCTTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATATCTACAAACTTTGAATCTAGTTTGGTGTTTCTAGCTCTTT  593

seq1  ATAGATTAGAAAAAGTGTTTTCTAGGAGTTTTCATCACATTATAGATACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAGAAAAAGTGTTTTCTAGGAGTTTTCATCACATTATAGATACA  643

seq1  TATTAATAGCTATACATTTCCCTTCACACTGTTGAAGGTCTTTTCCTTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGCTATACATTTCCCTTCACACTGTTGAAGGTCTTTTCCTTTA  693

seq1  GCTCTGGTTTACTGTTTTACTTTCTATTAGTCCTAAAACATTTTAAATTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTTTACTGTTTTACTTTCTATTAGTCCTAAAACATTTTAAATTT  743

seq1  TTCATGACTATATTTTTATTTATTAAGTCAAAGTTCTTTAATGTCATTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTATATTTTTATTTATTAAGTCAAAGTTCTTTAATGTCATTTC  793

seq1  TCTTGAGCAGGATTTCTCCTGTCCAGTTAATGTTTTCTTGTTATATCCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCAGGATTTCTCCTGTCCAGTTAATGTTTTCTTGTTATATCCTT  843

seq1  ACAGACCCACCTAAGAGCCATGCTTCTTAGATAATTCCATATCCAATCAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCACCTAAGAGCCATGCTTCTTAGATAATTCCATATCCAATCAA  893

seq1  GTTAACATTCAAGATTAATGGTCACAAGTGTATAGAGTGGTTTAAATGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTCAAGATTAATGGTCACAAGTGTATAGAGTGGTTTAAATGAA  943

seq1  AGCAACCTCCTTAAAATCAGTTACTTGAACAATTGGTTACCAAGTGTCTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTCCTTAAAATCAGTTACTTGAACAATTGGTTACCAAGTGTCTT  993

seq1  AGGGAGTTTGGGAGATGCATTTAAAGACTTGCACCCCTTCTATAGTTCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTTGGGAGATGCATTTAAAGACTTGCACCCCTTCTATAGTTCAA  1043

seq1  GATACAAGTTCACAGTTTTCTGCTTCTGCTGCTATGTCTCTATTTTGCTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGTTCACAGTTTTCTGCTTCTGCTGCTATGTCTCTATTTTGCTT  1093

seq1  TTGTACCACCCCACCAAGATGAGCTCTTAACTTTCTTGAACTGTAAATTA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCACCCCACCAAGATGAGCTCTTAACTTTCTTGAACTGTAAATTA  1143

seq1  AATGAATTC  1150
      |||||||||
seq2  AATGAATTC  1152


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