BAC Information

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BAC

Clone NameB6Ng01-243P02
ChromosomeX (Build37)
Map Location 83,774,157 - 83,923,468
singlet/doubletdoublet
Overlap genenone
Upstream geneMap3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneIl1rapl1, LOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243P02.bB6Ng01-243P02.g
ACCGA053198GA053199
length9991,169
definitionB6Ng01-243P02.b B6Ng01-243P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,774,157 - 83,775,101)(83,922,293 - 83,923,468)
sequence
gaattcctctggattttcagattgaatttgaacagaaaagttcactgcaa
atttatacatccatctacaaatatgaggaagaaagaaaagagacaatgcc
atggactgaccaaagtacccaataattatttataaatatatcccctcatg
gaatctcatgttgaagcaatactctgaatcaggtacaatgctctgtaagt
aaaaaaaaaaaaaaaaaaaaaagatcagtagccacacctctttcttgcag
caaagtggttttgctatcactcttctggattcaggaaatgtctttgcaat
atctgacactaccttagtttatcacaggtattagttagtgctattcctgc
atactctcagtcatttcctgagtgacatttcttaataaatttcctctctt
gttcctataatttgtagtgcttcagagaaaattcacacactcttttcgtg
tagaaccctcaggtaatcctgcaccatgtctgcctggataatgccaggct
tctacctttatcataatggactgaacctctgaacctgtaatccaacctca
attaaatattattaactaggggcctgtgcaattatgtccatccgctgtgg
ctcctgttttaggtcgttcctctaatgtcacagccttacctgtcataggg
taaccctatcgccaccgggccctgtgtcttaggttggtctgtgcatgagg
aaagttgcccgtctctggataccgcagtgctatctgacagtaactgctaa
atgacctagggcgaactctgcacaagaggccagccaaaaatgaattagtg
gggaaatcatgatcaccctatcgtgtgcaatgaggaaacctcagcgatgt
gcaagggctgatcaatgatcgttgagtctctctcatcccagtgcaatgga
tccataaatccgtggggtgcaagagcagagaacccagatgccgactaatt
cttgagcatagataaccaaacttcaggggaggcgccattttcatagctc
gaattctttaaaaatttcagatactaaccctctgtctgatgtaggtttta
accttattttgaaatttactttgatccataaagtgatttagccagtggag
tgctaatactcagtgttatacttagtaagatcataatagtagtggtgtgc
tagacaggataagctaagaataaagagtataggtatgtaatctggaaata
gttatgctctaaagaacacataacaaaataattaatatagaagttttgca
tcaatacatttaatggtgctcatctactaaatgtgcttttctttacagta
aataagtttattgcatcctgaaatgcagctttaggacaatttttgaaagt
tttgttttggtttgattcctttgttattttgttttgttttctgacttttt
tttcttttacattgtctttgtaattactgattatttctgacaggcagtaa
tcagtcccagcattactatatctcagaaataagtagctgccatatgtttt
aatttcttgttatctcaagcatttaatagacttgtgccttcttatcataa
tcatctttggggaggtgaattttctaattattcaaacgtctcctaaaagt
aaataccttatttccttaaaaatgtttcttaaaaatattatttatgtaat
cttgagttttcaatgttaagagtaattattctttactagatctgtcaatc
atgcaatgacttactttacatatttgtagtggctttaaataggaagttcc
aggaaagcttacatgtgagaagtaggaagagaaacaaaatggtggtaatt
tttggaaataaagatgatctttgaacaaagaatcaatgaaatagatcata
aaagaaatcaaacaaaatactaaaatgtgagattactagacctaagaaac
agaacagattcaatgccaaccctcagaacttagggatataacaatacttc
aggtcacatgctgaatttatctagtcgtgtgctatattaaagtactatgc
tactatgggtttgaatatgaaaggtctccatagcttaatatgtctgttca
ctggatccagtaagtgctgtttcaaaggctgttaaccttttagggaatga
acatgcagaaaaagtgctcactggtggcagatcttgggaggttttaatgc
caaccactcctctggttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_83774157_83775101
seq2: B6Ng01-243P02.b_45_989

seq1  GAATTCCTCTGGATTTTCAGATTGAATTTGAACAGAAAAGTTCACTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGATTTTCAGATTGAATTTGAACAGAAAAGTTCACTGCAA  50

seq1  ATTTATACATCCATCTACAAATATGAGGAAGAAAGAAAAGAGACAATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACATCCATCTACAAATATGAGGAAGAAAGAAAAGAGACAATGCC  100

seq1  ATGGACTGACCAAAGTACCCAATAATTATTTATAAATATATCCCCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGACCAAAGTACCCAATAATTATTTATAAATATATCCCCTCATG  150

seq1  GAATCTCATGTTGAAGCAATACTCTGAATCAGGTACAATGCTCTGTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCATGTTGAAGCAATACTCTGAATCAGGTACAATGCTCTGTAAGT  200

seq1  AAAAAAAAAAAAAAAAAAAAAAGATCAGTAGCCACACCTCTTTCTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGATCAGTAGCCACACCTCTTTCTTGCAG  250

seq1  CAAAGTGGTTTTGCTATCACTCTTCTGGATTCAGGAAATGTCTTTGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGTTTTGCTATCACTCTTCTGGATTCAGGAAATGTCTTTGCAAT  300

seq1  ATCTGACACTACCTTAGTTTATCACAGGTATTAGTTAGTGCTATTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACACTACCTTAGTTTATCACAGGTATTAGTTAGTGCTATTCCTGC  350

seq1  ATACTCTCAGTCATTTCCTGAGTGACATTTCTTAATAAATTTCCTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAGTCATTTCCTGAGTGACATTTCTTAATAAATTTCCTCTCTT  400

seq1  GTTCCTATAATTTGTAGTGCTTCAGAGAAAATTCACACACTCTTTTCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATAATTTGTAGTGCTTCAGAGAAAATTCACACACTCTTTTCGTG  450

seq1  TAGAACCCTCAGGTAATCCTGCACCATGTCTGCCTGGATAATGCCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCTCAGGTAATCCTGCACCATGTCTGCCTGGATAATGCCAGGCT  500

seq1  TCTACCTTTATCATAATGGACTGAACCTCTGAACCTGTAATCCAACCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTTATCATAATGGACTGAACCTCTGAACCTGTAATCCAACCTCA  550

seq1  ATTAAATATTATTAACTAGGGGCCTGTGCAATTATGTCCATCCGCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTATTAACTAGGGGCCTGTGCAATTATGTCCATCCGCTGTGG  600

seq1  CTCCTGTTTTAGGTCGTTCCTCTAATGTCACAGCCTTACCTGTCATAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTTAGGTCGTTCCTCTAATGTCACAGCCTTACCTGTCATAGGG  650

seq1  TAACCCTATCGCCACCGGGCCCTGTGTCTTAGGTTGGTCTGTGCATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTATCGCCACCGGGCCCTGTGTCTTAGGTTGGTCTGTGCATGAGG  700

seq1  AAAGTTGCCCGTCTCTGGATACCGCAGTGCTATCTGACAGTAACTGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGCCCGTCTCTGGATACCGCAGTGCTATCTGACAGTAACTGCTAA  750

seq1  ATGACCTAGGGCGAACTCTGCAAAAGAGGCCAGCCAAAAATGAATTAGTG  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGACCTAGGGCGAACTCTGCACAAGAGGCCAGCCAAAAATGAATTAGTG  800

seq1  GGGAAATCATGATCACCCTATCGTGTGCAATGAGGAAACCTCAGCGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCATGATCACCCTATCGTGTGCAATGAGGAAACCTCAGCGATGT  850

seq1  GCAAGGGCTGATCAATGATCGTTGAGTCTCTCTCATCCCAGTGCAATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCTGATCAATGATCGTTGAGTCTCTCTCATCCCAGTGCAATGGA  900

seq1  TCCATAAATCCGTGGGGTGCAAGAGCAGAGAACCCAGATGCCGAC  945
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAATCCGTGGGGTGCAAGAGCAGAGAACCCAGATGCCGAC  945

seq1: chrX_83922293_83923468
seq2: B6Ng01-243P02.g_66_1234 (reverse)

seq1  GTAA-CAGA-GAGTGGTTTGGGCTATAAAACCT--CAAGATCTGCCACCA  46
      |||| |||| ||||||||  |||  ||||||||  |||||||||||||||
seq2  GTAACCAGAGGAGTGGTT--GGCATTAAAACCTCCCAAGATCTGCCACCA  48

seq1  GTGAGCCACTTTTTCTGGCAATGTTCTATCCCCTAAAGGTTTAACAGCCT  96
      ||||| |||||||||||   |||||| || ||||||| | ||||||||||
seq2  GTGAG-CACTTTTTCTG--CATGTTC-ATTCCCTAAAAGGTTAACAGCCT  94

seq1  TTGGAAACAGGCACTAACTGGAACCAAGTGAACAGACATATAAGCCTATG  146
      || |||||| ||||| |||||| || ||||||||||||||| |  |||||
seq2  TT-GAAACA-GCACTTACTGGATCC-AGTGAACAGACATATTAAGCTATG  141

seq1  GAAGACCTTTCATATTCAAA-CCATAGTAGCATAGTACTTTAATATAGCA  195
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  G-AGACCTTTCATATTCAAACCCATAGTAGCATAGTACTTTAATATAGCA  190

seq1  CAACGACTAGATAAATTCAGCATGTGACCTGAAGTATTTGTTATATCCCT  245
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  C-ACGACTAGATAAATTCAGCATGTGACCTGAAGTA-TTGTTATATCCCT  238

seq1  AAGTTCTGAGGGTTGGCATTGAATCTGTTCTGTTTCTTAGGTCTAGTAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGAGGGTTGGCATTGAATCTGTTCTGTTTCTTAGGTCTAGTAAT  288

seq1  CTCACATTTTAGTATTTTGTTTGATTTCTTTTATGATCTATTTCATTGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTTTAGTATTTTGTTTGATTTCTTTTATGATCTATTTCATTGAT  338

seq1  TCTTTGTTCAAAGATCATCTTTATTTCCAAAAATTACCACCATTTTGTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCAAAGATCATCTTTATTTCCAAAAATTACCACCATTTTGTTT  388

seq1  CTCTTCCTACTTCTCACATGTAAGCTTTCCTGGAACTTCCTATTTAAAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTACTTCTCACATGTAAGCTTTCCTGGAACTTCCTATTTAAAGC  438

seq1  CACTACAAATATGTAAAGTAAGTCATTGCATGATTGACAGATCTAGTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAATATGTAAAGTAAGTCATTGCATGATTGACAGATCTAGTAAA  488

seq1  GAATAATTACTCTTAACATTGAAAACTCAAGATTACATAAATAATATTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTACTCTTAACATTGAAAACTCAAGATTACATAAATAATATTTT  538

seq1  TAAGAAACATTTTTAAGGAAATAAGGTATTTACTTTTAGGAGACGTTTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACATTTTTAAGGAAATAAGGTATTTACTTTTAGGAGACGTTTGA  588

seq1  ATAATTAGAAAATTCACCTCCCCAAAGATGATTATGATAAGAAGGCACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGAAAATTCACCTCCCCAAAGATGATTATGATAAGAAGGCACAA  638

seq1  GTCTATTAAATGCTTGAGATAACAAGAAATTAAAACATATGGCAGCTACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTAAATGCTTGAGATAACAAGAAATTAAAACATATGGCAGCTACT  688

seq1  TATTTCTGAGATATAGTAATGCTGGGACTGATTACTGCCTGTCAGAAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGAGATATAGTAATGCTGGGACTGATTACTGCCTGTCAGAAATA  738

seq1  ATCAGTAATTACAAAGACAATGTAAAAGAAAAAAAAGTCAGAAAACAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAATTACAAAGACAATGTAAAAGAAAAAAAAGTCAGAAAACAAAA  788

seq1  CAAAATAACAAAGGAATCAAACCAAAACAAAACTTTCAAAAATTGTCCTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACAAAGGAATCAAACCAAAACAAAACTTTCAAAAATTGTCCTA  838

seq1  AAGCTGCATTTCAGGATGCAATAAACTTATTTACTGTAAAGAAAAGCACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCATTTCAGGATGCAATAAACTTATTTACTGTAAAGAAAAGCACA  888

seq1  TTTAGTAGATGAGCACCATTAAATGTATTGATGCAAAACTTCTATATTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGATGAGCACCATTAAATGTATTGATGCAAAACTTCTATATTAA  938

seq1  TTATTTTGTTATGTGTTCTTTAGAGCATAACTATTTCCAGATTACATACC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTATGTGTTCTTTAGAGCATAACTATTTCCAGATTACATACC  988

seq1  TATACTCTTTATTCTTAGCTTATCCTGTCTAGCACACCACTACTATTATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTTTATTCTTAGCTTATCCTGTCTAGCACACCACTACTATTATG  1038

seq1  ATCTTACTAAGTATAACACTGAGTATTAGCACTCCACTGGCTAAATCACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTAAGTATAACACTGAGTATTAGCACTCCACTGGCTAAATCACT  1088

seq1  TTATGGATCAAAGTAAATTTCAAAATAAGGTTAAAACCTACATCAGACAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATCAAAGTAAATTTCAAAATAAGGTTAAAACCTACATCAGACAG  1138

seq1  AGGGTTAGTATCTGAAATTTTTAAAGAATTC  1176
      |||||||||||||||||||||||||||||||
seq2  AGGGTTAGTATCTGAAATTTTTAAAGAATTC  1169