BAC Information

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BAC

Clone NameB6Ng01-245C20
ChromosomeX (Build37)
Map Location 28,777,743 - 28,778,841
singlet/doubletsinglet
Overlap geneLOC664958
Upstream geneLOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386, LOC100039127, EG664944, LOC100039423, LOC100039145, LOC664951, LOC100042071
Downstream geneLOC664964, LOC100042087, LOC100039171, LOC100042103, LOC100042109, LOC100042115, LOC100042122, LOC100042135, LOC100042144, LOC664982, LOC100039212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245C20.bB6Ng01-245C20.g
ACCGA054128GA054129
length1,0851,099
definitionB6Ng01-245C20.b B6Ng01-245C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttttccattgtgtcatataaagaaaagcacagaggagtttta
gaaaagaaactgacttaatataaaattaatactgggtcaaagaaatactg
ttgcatgtacagaattttgtatacatatcacttagctttgaatacatgga
atgtagaaaagtttacatcatttttttcctctaaaaatcccttcaataca
gttatgtagatgcctcagtaataaatagggtttactgtgaaaggaggact
ttcgaaagtttgattctagtacccatttagaaaactaaccatggatgatt
gcttctacaatagcagcactgtggtaggcagagtgagaattgctcggact
tgctggctgcttatctagctacatgttcagtgaaagagcaggtcttacgg
gaataaggtggaaagaaatagagcaaaacccaacatcctcctctgccctc
cacatgtgtatatatgcaacacagacacaaatatacgaaaaaattaaaat
taagtttaattaatgtcacacctgttgaaaaagcaccattttcacttctg
taccacaggcaaaaataagtccatgatgctaaatcaaaaatatttgcaag
agtccgtgtcatgagtagatcttgggtgctgacctagtcccacaataccc
agagtaagctcaatcccaggtgctctaacactcccaggatcacaggaatg
gccccaacatcaggagtaactgagtccctaaggatccagggacacaggaa
ctcctgcctttccagtggcatggattccttctggtctgaaactgcacctg
gatcagacctggggtactggctctgcacccactcttaaaacacccagaag
gagcacgactcccaggtattctgaaatgctcaagatcacaggatcacaga
ggaagctcgactcccaggagatcagacacacccaggaacactggagttct
gacagagagcacagctgaggcacacatctttcccaacacctgtgtatctg
ggacccccacaggacaggaaacaaaatcatcctcccggcagagcacaggt
ctgcagtatgcactgtgtctaagagaaacctagaa
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagagaaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctaagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggactcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaagtagcccaagagctaaagggatctgccaatccc
tatagtgacacattatgagctaccagttacccctgagctcttggactcta
gcttgcattatatattcaaaaggatggccctaagtcggcccatcactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_28777743_28778841
seq2: B6Ng01-245C20.b_48_1132

seq1  GAATTCATTTTTCCATTGTGTCATATAAAGAAAAGCACAGAGGAGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCCATTGTGTCATATAAAGAAAAGCACAGAGGAGTTTTA  50

seq1  GAAAAGAAACTGACTTAATATAAAATTAATACTGGGTCAAAGAAATACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAACTGACTTAATATAAAATTAATACTGGGTCAAAGAAATACTG  100

seq1  TTGCATGTACAGAATTTTGTATACATATCACTTAGCTTTGAATACATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTACAGAATTTTGTATACATATCACTTAGCTTTGAATACATGGA  150

seq1  ATGTAGAAAAGTTTACATCATTTTTTTCCTCTAAAAATCCCTTCAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAAAGTTTACATCATTTTTTTCCTCTAAAAATCCCTTCAATACA  200

seq1  GTTATGTAGATGCCTCAGTAATAAATAGGGTTTACTGTGAAAGGAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTAGATGCCTCAGTAATAAATAGGGTTTACTGTGAAAGGAGGACT  250

seq1  TTCGAAAGTTTGATTCTAGTACCCATTTAGAAAACTAACCATGGATGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAAGTTTGATTCTAGTACCCATTTAGAAAACTAACCATGGATGATT  300

seq1  GCTTCTACAATAGCAGCACTGTGGTAGGCAGAGTGAGAATTGCTCGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACAATAGCAGCACTGTGGTAGGCAGAGTGAGAATTGCTCGGACT  350

seq1  TGCTGGCTGCTTATCTAGCTACATGTTCAGTGAAAGAGCAGGTCTTACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGCTTATCTAGCTACATGTTCAGTGAAAGAGCAGGTCTTACGG  400

seq1  GAATAAGGTGGAAAGAAATAGAGCAAAACCCAACATCCTCCTCTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGTGGAAAGAAATAGAGCAAAACCCAACATCCTCCTCTGCCCTC  450

seq1  CACATGTGTATATATGCAACACAGACACAAATATACGAAAAAATTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTATATATGCAACACAGACACAAATATACGAAAAAATTAAAAT  500

seq1  TAAGTTTAATTAATGTCACACCTGTTGAAAAAGCACCATTTTCACTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATTAATGTCACACCTGTTGAAAAAGCACCATTTTCACTTCTG  550

seq1  TACCACAGGCAAAAATAAGTCCATGATGCTAAATCAAAAATATTTGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGGCAAAAATAAGTCCATGATGCTAAATCAAAAATATTTGCAAG  600

seq1  AGTCCGTGTCATGAGTAGATCTTGGGTGCTGACCTAGTCCCACAATACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTGTCATGAGTAGATCTTGGGTGCTGACCTAGTCCCACAATACCC  650

seq1  AGAGTAAGCTCAAATCCCAGGTGCTCTAACACTCCCAGGATCACAGGAAT  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGCTC-AATCCCAGGTGCTCTAACACTCCCAGGATCACAGGAAT  699

seq1  GGCCCCAACATCAGGAGTAACTGAGTCCCTAAGGATCCAGGGACACAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAACATCAGGAGTAACTGAGTCCCTAAGGATCCAGGGACACAGGA  749

seq1  ACTCCTGCCTTTCCAGTGGCATGGATTCCTTCTGGTCTGAAACTGCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCCTTTCCAGTGGCATGGATTCCTTCTGGTCTGAAACTGCACCT  799

seq1  GGATCAGACCTGGGGTACTGGCTCTGCACCCACTCTTAAAACACCCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGACCTGGGGTACTGGCTCTGCACCCACTCTTAAAACACCCAGAA  849

seq1  GGAGCACGACTCCCAGGTATTCTGAAATGCTCAAGATCACAGGATCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACGACTCCCAGGTATTCTGAAATGCTCAAGATCACAGGATCACAG  899

seq1  AGGAAGCTCGACTCCCAGGAGATCAGACACACCCAGGAACACTGGAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTCGACTCCCAGGAGATCAGACACACCCAGGAACACTGGAGTTC  949

seq1  TGACAGAAGAGCACAGCTGAGGGCACAACATCTTTCCCAACAACCTGTGT  1000
      |||||| ||||||||||||| ||||| |||||||||||||| ||||||||
seq2  TGACAG-AGAGCACAGCTGA-GGCAC-ACATCTTTCCCAAC-ACCTGTGT  995

seq1  ATCTGGGACCCCCACAAGAACCAGGGAAACAAAATCATCCTCCCGGCCAG  1050
      |||||||||||||||| ||  || |||||||||||||||||||||| |||
seq2  ATCTGGGACCCCCACAGGA--CA-GGAAACAAAATCATCCTCCCGG-CAG  1041

seq1  AGGCACAGGTTCCTTGCAGTATGCAACTGTGTCTAGAGA-AAACCTAGGA  1099
      | ||||||||    |||||||||| |||||||||| ||| |||||||| |
seq2  A-GCACAGGT---CTGCAGTATGC-ACTGTGTCTA-AGAGAAACCTAGAA  1085