BAC Information

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BAC

Clone NameB6Ng01-246A05
ChromosomeX (Build37)
Map Location 83,828,221 - 83,960,989
singlet/doubletdoublet
Overlap genenone
Upstream geneMap3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneIl1rapl1, LOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246A05.bB6Ng01-246A05.g
ACCGA054748GA054749
length1,0421,088
definitionB6Ng01-246A05.b B6Ng01-246A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,959,939 - 83,960,989)(83,828,221 - 83,829,279)
sequence
gaattctttcagttgactttgcccgttttattcacttatacattttttaa
tggaacatttctgtactgccaagtttatttaccaggatatgttctgctat
acatttaagcattacaaattttccacttctcaatttttaatgaaaatgga
ccgaatagaatattgtttccttgaacaaattgagacaccctgattttgag
tggttttatttttagttttattagttagttagttagttagttagttagtt
agttagttagttagttagttagttgaaaaacagcatactgtggtcacatc
ttcacagctcgccatttacctgctccacgcatggcaaggtctagtatccc
agggaatactcatttagagcaaagtggaaaaatgatttgtgatgtcagga
cctactttatatttgaaaatctaggctgcattttatttcagtcaaaggtg
atgacaaaaatggtgcatgtcaaaagataaacaacacgaatattggtcac
tacgaatgccatctctctgagtcttgtaagtttaagcactttcttaaaac
cataagatgattacaactgaactactggcacatacaatcttattttgttg
ttgccttataatttttggacctcagacagctctgaatttctgcttacaac
ataaaatccagaattgttggcattttctgcataatgaatgaaacatttta
agacaaaatttttaacagtacaagatgctatcattggtcagcatgcagct
ttccaatagatgtcttaaaattttcctgtaagtatcatttaacatgcaaa
aatttgtgaatttgctttacaaatgagaaacccaattaatgtcacattta
cttcctgccttggccatgactaaagtcagctgtaatgctaacttgtgtga
cccatataatttagggagatattgcttcacattttttttagaattatttt
ttataggtatttcctcatttacttccaagcttcccaaaagtcccacactt
ttaaagtcccagttagtcagcatatggaagtcatccctggta

gaattctgtgtgggcccttgcgggtgtcaggcgactcagctggcaaggta
gccggggctcgagtggagtggaaggggtttgtgccccagatcaagcccgg
gtagcctgcttccctatgtaccgcagtctcaagttccatgcgattggatt
ggggtaggcgctgtgttccactcaccagaggtcttagggtcccgtgggga
gtcccgtgtgggcccttgcgggtgttgggcaagactctgctggcaaggta
gcccggggctcgagtctcgagtcgagcggaagggacttgtgccccagatc
aggcccgggtagcctgcttccctatgtaccgcagtctcaagttccgcgcg
attggattggggcaggcactgtggtccactcaccagaggtcttagggtcc
cgtggggagtcccgtgtgggcccttgcgggtgttgggcaagactctgctg
gcaaggtagcccggggctcgtgtctcgagtcgagcggaagggcgtaaaag
attttaaaatatcgctttagcgatgttttaaatgaagcttgcttttcata
gcattttttatggttgtttcattaaagaaatatctattgacacatggtgt
gagtacatagaagtttcagactggtgaattttcatgcatagcataacttt
ggggacttaagaattatgattatgtatattagcaccttaatggatttcta
attagatttgttttcctaggctcatattgtccattaattgtcatattttc
tcttcctctctaatgtttttagtgctctttggattatactagttaggttt
tccaggacaatgttatagagataatgagcatttatgtcttgtgaatactt
atatttgagaaatgctaaatcaagattccatgtttaactatgatgtttat
aacttttatgattaggcatttcttttctcaaatcagggaaagtcatattt
attttacatttaattattttttaataaagaacaagctttttaaaggtata
gctaaaatttacttaagaattaaataatttctcccttcatttaagtggat
aaattataaacttatcaatttatagggaaaattataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_83959939_83960989
seq2: B6Ng01-246A05.b_29_1070 (reverse)

seq1  TACCAGGATTGATTTCCATATTGCTGACTAAACTGTGACTTTAAAAGTGT  50
      |||||||  ||| ||||||| |||||||| ||||| ||||||||||||||
seq2  TACCAGGGATGACTTCCATA-TGCTGACT-AACTGGGACTTTAAAAGTGT  48

seq1  TGGGGACTTTTTGGATAGCTTTGGAAATGTAAATGAGGAAAATACCTAAT  100
        ||||||||| ||| ||| ||||||  |||||||||| |||||||| ||
seq2  --GGGACTTTTGGGA-AGC-TTGGAA--GTAAATGAGG-AAATACCT-AT  90

seq1  AAAAAAATTAATTCTAAAAAAAATGTGAAGCAATATTCTCCTAAATTATA  150
      ||||||  ||||||||||||||||||||||||||||   |||||||||||
seq2  AAAAAA--TAATTCTAAAAAAAATGTGAAGCAATATCTCCCTAAATTATA  138

seq1  TTGGTCACACAAGTTAGCATTACAGCTGACTTTAGTCAT-GCCAAGGCAG  199
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGGTCACACAAGTTAGCATTACAGCTGACTTTAGTCATGGCCAAGGCAG  188

seq1  GAAGTAAATGTGACATTAATTGGGTTTCTCATTTGTAAAGC-AATTCAC-  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GAAGTAAATGTGACATTAATTGGGTTTCTCATTTGTAAAGCAAATTCACA  238

seq1  AATTTTTGCATGTTAAATGATACTTACAGGAAAATTTTAAGACATCTATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGCATGTTAAATGATACTTACAGGAAAATTTTAAGACATCTATT  288

seq1  GGAAAGCTGCATGCTGACCAATGATAGCATCTTGTACTGTTAAAAATTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTGCATGCTGACCAATGATAGCATCTTGTACTGTTAAAAATTTT  338

seq1  GTCTTAAAATGTTTCATTCATTATGCAGAAAATGCCAACAATTCTGGATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAATGTTTCATTCATTATGCAGAAAATGCCAACAATTCTGGATT  388

seq1  TTATGTTGTAAGCAGAAATTCAGAGCTGTCTGAGGTCCAAAAATTATAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGTAAGCAGAAATTCAGAGCTGTCTGAGGTCCAAAAATTATAAG  438

seq1  GCAACAACAAAATAAGATTGTATGTGCCAGTAGTTCAGTTGTAATCATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACAAAATAAGATTGTATGTGCCAGTAGTTCAGTTGTAATCATCT  488

seq1  TATGGTTTTAAGAAAGTGCTTAAACTTACAAGACTCAGAGAGATGGCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTAAGAAAGTGCTTAAACTTACAAGACTCAGAGAGATGGCATT  538

seq1  CGTAGTGACCAATATTCGTGTTGTTTATCTTTTGACATGCACCATTTTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTGACCAATATTCGTGTTGTTTATCTTTTGACATGCACCATTTTTG  588

seq1  TCATCACCTTTGACTGAAATAAAATGCAGCCTAGATTTTCAAATATAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCTTTGACTGAAATAAAATGCAGCCTAGATTTTCAAATATAAAG  638

seq1  TAGGTCCTGACATCACAAATCATTTTTCCACTTTGCTCTAAATGAGTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTGACATCACAAATCATTTTTCCACTTTGCTCTAAATGAGTATT  688

seq1  CCCTGGGATACTAGACCTTGCCATGCGTGGAGCAGGTAAATGGCGAGCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGATACTAGACCTTGCCATGCGTGGAGCAGGTAAATGGCGAGCTG  738

seq1  TGAAGATGTGACCACAGTATGCTGTTTTTCAACTAACTAACTAACTAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTGACCACAGTATGCTGTTTTTCAACTAACTAACTAACTAACT  788

seq1  AACTAACTAACTAACTAACTAACTAACTAACTAATAAAACTAAAAATAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAACTAACTAACTAACTAACTAACTAATAAAACTAAAAATAAA  838

seq1  ACCACTCAAAATCAGGGTGTCTCAATTTGTTCAAGGAAACAATATTCTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCAAAATCAGGGTGTCTCAATTTGTTCAAGGAAACAATATTCTAT  888

seq1  TCGGTCCATTTTCATTAAAAATTGAGAAGTGGAAAATTTGTAATGCTTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCCATTTTCATTAAAAATTGAGAAGTGGAAAATTTGTAATGCTTAA  938

seq1  ATGTATAGCAGAACATATCCTGGTAAATAAACTTGGCAGTACAGAAATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGCAGAACATATCCTGGTAAATAAACTTGGCAGTACAGAAATGT  988

seq1  TCCATTAAAAAATGTATAAGTGAATAAAACGGGCAAAGTCAACTGAAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAAAAAATGTATAAGTGAATAAAACGGGCAAAGTCAACTGAAAGA  1038

seq1  ATTC  1051
      ||||
seq2  ATTC  1042


seq1: chrX_83828221_83829279
seq2: B6Ng01-246A05.g_69_1156

seq1  GAATTCTGTGTGGGCCCTTGCGGGTGTCAGGCGACTCAGCTGGCAAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGGGCCCTTGCGGGTGTCAGGCGACTCAGCTGGCAAGGTA  50

seq1  GCCGGGGCTCGAGTGGAGTGGAAGGGGTTTGTGCCCCAGATCAAGCCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGCTCGAGTGGAGTGGAAGGGGTTTGTGCCCCAGATCAAGCCCGG  100

seq1  GTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCATGCGATTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCATGCGATTGGATT  150

seq1  GGGGTAGGCGCTGTGTTCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGGCGCTGTGTTCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGA  200

seq1  GTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTA  250

seq1  GCCCGGGGCTCGAGTCTCGAGTCGAGCGGAAGGGACTTGTGCCCCAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGGCTCGAGTCTCGAGTCGAGCGGAAGGGACTTGTGCCCCAGATC  300

seq1  AGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCGCGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCGCGCG  350

seq1  ATTGGATTGGGGCAGGCACTGTGGTCCACTCACCAGAGGTCTTAGGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTGGGGCAGGCACTGTGGTCCACTCACCAGAGGTCTTAGGGTCC  400

seq1  CGTGGGGAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTG  450

seq1  GCAAGGTAGCCCGGGGCTCGTGTCTCGAGTCGAGCGGAAGGGCGTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTAGCCCGGGGCTCGTGTCTCGAGTCGAGCGGAAGGGCGTAAAAG  500

seq1  ATTTTAAAATATCGCTTTAGCGATGTTTTAAATGAAGCTTGCTTTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATATCGCTTTAGCGATGTTTTAAATGAAGCTTGCTTTTCATA  550

seq1  GCATTTTTTATGGTTG-TTCATTAAAGAAATATCTATTGACACATGGTGT  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCATTTTTTATGGTTGTTTCATTAAAGAAATATCTATTGACACATGGTGT  600

seq1  GAGTACATAGAAGTTTCAGACTGGTGAATTTTCATGCATAGCATAACTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATAGAAGTTTCAGACTGGTGAATTTTCATGCATAGCATAACTTT  650

seq1  GGGGACTTAAGAATTATGATTATGTATATTAGCACCTTAATGGATTTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTAAGAATTATGATTATGTATATTAGCACCTTAATGGATTTCTA  700

seq1  ATTAGATTTGTTTTCCTAGGCTCATATTGTCCATTAATTGTCATATTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTGTTTTCCTAGGCTCATATTGTCCATTAATTGTCATATTTTC  750

seq1  TCTTCCTCTCTAATGTTTTTAGTGCTCTTTGGATTATACTAGTTAGGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTCTAATGTTTTTAGTGCTCTTTGGATTATACTAGTTAGGTTT  800

seq1  TCCAGGACAATGTTATAGAGATAATGAGCATTTATGTCTTGTGAATACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAATGTTATAGAGATAATGAGCATTTATGTCTTGTGAATACTT  850

seq1  ATA-TTGAG-AATGCT-AATCAAGATTCCATG-TTAACTATGATGTTTAT  895
      ||| ||||| |||||| ||||||||||||||| |||||||||||||||||
seq2  ATATTTGAGAAATGCTAAATCAAGATTCCATGTTTAACTATGATGTTTAT  900

seq1  AAC-TTTATGA-TAGGCATT--CTTTCTCAAATCAGGG-AAGTCATATT-  939
      ||| ||||||| ||||||||   ||||||||||||||| |||||||||| 
seq2  AACTTTTATGATTAGGCATTTCTTTTCTCAAATCAGGGAAAGTCATATTT  950

seq1  -ATTTACATT--AATATTTTT--ATAAAG-ACAAG-TTTTTAAA-GTATA  981
        ||||||||  | |||||||  |||||| ||||| |||||||| |||||
seq2  ATTTTACATTTAATTATTTTTTAATAAAGAACAAGCTTTTTAAAGGTATA  1000

seq1  GCTAAAA-TTACTT-AGAATTAAATA--TTCT-CCTTCA-TTAAGT-GAT  1024
      ||||||| |||||| |||||||||||  |||| |||||| |||||| |||
seq2  GCTAAAATTTACTTAAGAATTAAATAATTTCTCCCTTCATTTAAGTGGAT  1050

seq1  AAATTATAAATTTAT-AATTTATAGG--AAATTATAAA  1059
      |||||||||| |||| ||||||||||  ||||||||||
seq2  AAATTATAAACTTATCAATTTATAGGGAAAATTATAAA  1088


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