BAC Information

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BAC

Clone NameB6Ng01-246H12
Chromosome18 (Build37)X (Build37)
Map Location 18,691,157 - 18,692,32117,760,480 - 17,760,529
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246H12.bB6Ng01-246H12.g
ACCGA055076GA055077
length1,175276
definitionB6Ng01-246H12.b B6Ng01-246H12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,691,157 - 18,692,321)(17,760,480 - 17,760,529)
sequence
gaattcaaaaggcataaattgtacagtataaactttgtctcttactcatg
tttaacactcattagtcctattttggtcacagattgcgctagtaatttat
attttcagactgatacatttttttcccaattgcctcattctattaccaat
ttatttaactcctcttcgctgtgatggtgaaactgattaacatcattgac
attattactatacagaagcatccctgatttggactgaaatcaagactgta
cataagagaaaccttgatcctaacccttcattaaccagctacctgctctt
atattataggcatgtatcactatgcttatcccagatattttgttaacatg
tgaagtaggagtaatggctcatgtttaaggtacagaatggttatccagca
ccagatctttacaagaataaagtaccttatctaagataagtaccttatct
tagagcttttattttttaatcacttaaatgtatagaagcattttcacagt
aaaccatattttaaaaatcacagtctaaaattagactgtgccaggaacat
aacagattttaaaaccaaatagccaaattgtgaaattccaacgttttgaa
aaattgttttagatattatagaagtttatttagttatttagttatttatt
atttagatattatagcacaaatgtataacagtgaaagaaaaaattggaat
acaggaataaaatggaagtactacataaatgcctgtttacatatagataa
aatatttagtattgtatgtggaaattgataagcttaatactcacttgatt
ttatacaattactcactgttttgactgtgacattcagtgaatatagagcc
acaggtaagaaattcaatacctacagtaatttcttaatttgggtataaga
atggtcttttgactttagggaaaaatgttagtcatgagttttaacagatg
ttttatccctagctaaatatttgttctttaattcttaggttttaagagca
tttattggttataattatgatgaaattggtgaagtcagaaacagttcaaa
acttaacagaaacttaagtttacacacatgtgcagcttgcattaacctcg
tcaaatagatttctatcatcaatgtcacattaagccttatggaatagatg
gcttaattgtgaagtcaggaaataa

attgagaataagggcacaatgtacccaaacttttgggataatatgaaagc
agtgctaacaggaaatttcatagcattaagtgctttctcgactccccagt
gtagggactgtgagggcagggaggcaggagtgggtgggtgggagaacact
ctcatagaagcaggggaatgggggaagatatagggggattctgggagtgg
ggaaccaggaaaggggataacacttgaaatgtaaataaaatatacaataa
aaataaaataataataaaaaagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18691157_18692321
seq2: B6Ng01-246H12.b_45_1219 (reverse)

seq1  TTATT--CTGACTTCACAATTTAGCAATCTATTCCCATAGCCTT-ATGTG  47
      |||||  |||||||||||||| ||| |||||||||   || ||| |||| 
seq2  TTATTTCCTGACTTCACAATTAAGCCATCTATTCCATAAGGCTTAATGT-  49

seq1  GACATTTGATGATAG-AATCTATTGGACGA-GTTATTGC-AGCTGCACAT  94
      |||| |||||||||| |||||||| ||||| |||| ||| ||||||||||
seq2  GACA-TTGATGATAGAAATCTATTTGACGAGGTTAATGCAAGCTGCACAT  98

seq1  GTGTGTAAACTTAAGTTTCTTGTTAGTTTTG-ACTG-TTCTGACTTCACC  142
      ||||||||||||||||||||  | ||||||| |||| |||||||||||||
seq2  GTGTGTAAACTTAAGTTTCTGTTAAGTTTTGAACTGTTTCTGACTTCACC  148

seq1  -ATTTCATCATAATTAT-ACCAAT-AATGCTCTTAAAACCTAAGAATTAA  189
       |||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  AATTTCATCATAATTATAACCAATAAATGCTCTTAAAACCTAAGAATTAA  198

seq1  AGAACAAATATTTAGCTAGGGATAAAACATCTGTTAAAACTCATGACTAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATATTTAGCTAGGGATAAAACATCTGTTAAAACTCATGACTAA  248

seq1  CATTTTT-CCTAAAGTCAAAAGACCATTCTTATACCCAAATTAAGAAATT  288
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCCCTAAAGTCAAAAGACCATTCTTATACCCAAATTAAGAAATT  298

seq1  ACTGTAGGTATTGAATTTCTTACCTGTGGCTCTATATTCACTGAATGTCA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGTATTGAATTTCTTACCTGTGGCTCTATATTCACTGAATGTCA  348

seq1  CAGTCAAAACAGTGAGTAATTGTATAAAATCAAGTGAGTATTAAGCTTAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAACAGTGAGTAATTGTATAAAATCAAGTGAGTATTAAGCTTAT  398

seq1  CAATTTCCACATACAATACTAAATATTTTATCTATATGTAAACAGGCATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCACATACAATACTAAATATTTTATCTATATGTAAACAGGCATT  448

seq1  TATGTAGTACTTCCATTTTATTCCTGTATTCCAATTTTTTCTTTCACTGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTACTTCCATTTTATTCCTGTATTCCAATTTTTTCTTTCACTGT  498

seq1  TATACATTTGTGCTATAATATCTAAATAATAAATAACTAAATAACTAAAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTGTGCTATAATATCTAAATAATAAATAACTAAATAACTAAAT  548

seq1  AAACTTCTATAATATCTAAAACAATTTTTCAAAACGTTGGAATTTCACAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTATAATATCTAAAACAATTTTTCAAAACGTTGGAATTTCACAA  598

seq1  TTTGGCTATTTGGTTTTAAAATCTGTTATGTTCCTGGCACAGTCTAATTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTATTTGGTTTTAAAATCTGTTATGTTCCTGGCACAGTCTAATTT  648

seq1  TAGACTGTGATTTTTAAAATATGGTTTACTGTGAAAATGCTTCTATACAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGATTTTTAAAATATGGTTTACTGTGAAAATGCTTCTATACAT  698

seq1  TTAAGTGATTAAAAAATAAAAGCTCTAAGATAAGGTACTTATCTTAGATA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGATTAAAAAATAAAAGCTCTAAGATAAGGTACTTATCTTAGATA  748

seq1  AGGTACTTTATTCTTGTAAAGATCTGGTGCTGGATAACCATTCTGTACCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTTATTCTTGTAAAGATCTGGTGCTGGATAACCATTCTGTACCT  798

seq1  TAAACATGAGCCATTACTCCTACTTCACATGTTAACAAAATATCTGGGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGAGCCATTACTCCTACTTCACATGTTAACAAAATATCTGGGAT  848

seq1  AAGCATAGTGATACATGCCTATAATATAAGAGCAGGTAGCTGGTTAATGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAGTGATACATGCCTATAATATAAGAGCAGGTAGCTGGTTAATGA  898

seq1  AGGGTTAGGATCAAGGTTTCTCTTATGTACAGTCTTGATTTCAGTCCAAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGGATCAAGGTTTCTCTTATGTACAGTCTTGATTTCAGTCCAAA  948

seq1  TCAGGGATGCTTCTGTATAGTAATAATGTCAATGATGTTAATCAGTTTCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGCTTCTGTATAGTAATAATGTCAATGATGTTAATCAGTTTCA  998

seq1  CCATCACAGCGAAGAGGAGTTAAATAAATTGGTAATAGAATGAGGCAATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACAGCGAAGAGGAGTTAAATAAATTGGTAATAGAATGAGGCAATT  1048

seq1  GGGAAAAAAATGTATCAGTCTGAAAATATAAATTACTAGCGCAATCTGTG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAATGTATCAGTCTGAAAATATAAATTACTAGCGCAATCTGTG  1098

seq1  ACCAAAATAGGACTAATGAGTGTTAAACATGAGTAAGAGACAAAGTTTAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATAGGACTAATGAGTGTTAAACATGAGTAAGAGACAAAGTTTAT  1148

seq1  ACTGTACAATTTATGCCTTTTGAATTC  1165
      |||||||||||||||||||||||||||
seq2  ACTGTACAATTTATGCCTTTTGAATTC  1175


seq1: chrX_17760480_17760529
seq2: B6Ng01-246H12.g_288_347 (reverse)

seq1  TTTCTTT----------TTTTGACTTTATTGGATATTTTATTTACATTTC  40
      |||||||          ||||   ||||||| ||||||||||||||||||
seq2  TTTCTTTTTTATTATTATTTTATTTTTATTGTATATTTTATTTACATTTC  50

seq1  AAATGTTATC  50
      || |||||||
seq2  AAGTGTTATC  60


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