BAC Information

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BAC

Clone NameB6Ng01-249E17
ChromosomeX (Build37)
Map Location 45,664,643 - 45,781,544
singlet/doubletdoublet
Overlap geneLOC637576, Bcorl1, Elf4
Upstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1, LOC676253, Ocrl, LOC270596, LOC665672, Apln, Xpnpep2, 1200013B08Rik, Zdhhc9, Utp14a
Downstream geneAifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249E17.bB6Ng01-249E17.g
ACCGA057153GA057154
length1,102784
definitionB6Ng01-249E17.b B6Ng01-249E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,664,643 - 45,665,745)(45,780,765 - 45,781,544)
sequence
gaattcagaagcgagatctcaagaggaagctgagacaggcaaatagagag
ttccagaccaagctaagactctatgtagaataacaacaacaacaaaaaca
ataacgctgagataaaatgtcttgtcaaggcagagctgaacctacatatt
ggtgaactctggacagaaccatatattgtttctccgccattgtgcccagc
acgtaccgaactaaccgtcttccttctaccactagcaactatcatcactt
gaacccaccgccacagtttggaatcaaaagcgaattcccattatttacat
gggtaaaattttttaaaaggctggatagaacaagcgcatcaggcaaaaac
atttccacagtagcttctctgcaaatgtaagctcttagctagaggctgct
tccagggtgcttacctggcccacatgccaggagtaggcattttagatacg
atgttgggactatttatctgacacagacacacacacagctggccacttaa
tgctatcttagtcaataaagctaagtcccctcaggggatattgcctgtag
ccacagccacacttactctacagtggggcatagccctggccaatcccata
tcgaatgacccaaaggctgtgcggggaggggtgccagcaagaattccatc
tctccaggatcttgcagaatgacttgacttgtgaagtgctctgggcccca
taggtaacaagtagaatagtacttgtttgcgacaaagactaataaaaatg
gttaccatggccactatttcttgagctcttcccaagtggcaactgtatat
agcatatattatattgaatcaatatatatggtgggtactattattgtccc
tgtttagaagagaaagcaaatatggtgcagataataaaagtccagacctc
taaattaaaagaggtttcattattacctaatagcaaactgagtttgaaat
ccaggtctagtcattgtccagcttcagtgtttaaccattatactatccta
tctgtttcttacatggaatgattctaagactcctagaaagaacaccgtga
ggagttgggggttggggacatttcctgaaccaagtcatcaaaattgtgtg
gt
gaattccagaaaggtttcatgagagaacgaggtatttcaggagtgacagt
cgcctcttgagaggacagggaactagagaattgcaccgggtggcccagct
gactatctggcccccatgtttggcatgtgcaaagaatgccttgggtgtta
ccagcaattcggcgagccattgactgagctgatcaagcctagatttaaac
ccacttggtagagattgtggacgtggctctcccattaaagctgcctcctc
tggtaggggagggctgtatgggtgggtgctggatgctgcttggtgtgtcc
cagtaacagtcccaggaaggaagggtctgtacccctgagctggggagcct
agttgtggttatgcagaatcagtccaaactacctcgctgttgccttggct
tggaaagtgtactcagaacctcagaggcccagggtgtgtgttgacaggca
gcccggcctttttgctccgtctagtggtgcacactcctgcaatgtgtatc
tgcttttcggtgtatcaaccaggcatcacttccccatcccagagagactt
gggaatagactttgcctggaggcacgtgtgtcctctgacctcctctctct
agcaaggcagtgtgcagggggacaaaaggccactgaagctgtggcctagc
caaagggctttgagaggagcctggagacaagaaccttccatgtgtttctt
gcctgcctcctatagggtgtgcctttctgtggtggtggtgtctttggttt
tcaagtttcctgggagaggggggtttattttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_45664643_45665745
seq2: B6Ng01-249E17.b_42_1143

seq1  GAATTCAGAAGCGAGATCTCAAGAGGAAGCTGAGACAGGCAAATAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGCGAGATCTCAAGAGGAAGCTGAGACAGGCAAATAGAGAG  50

seq1  TTCCAGACCAAGCTAAGACTCTATGTAGAATAACAACAACAACAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACCAAGCTAAGACTCTATGTAGAATAACAACAACAACAAAAACA  100

seq1  ATAACGCTGAGATAAAATGTCTTGTCAAGGCAGAGCTGAACCTACATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGCTGAGATAAAATGTCTTGTCAAGGCAGAGCTGAACCTACATATT  150

seq1  GGTGAACTCTGGACAGAACCATATATTGTTTCTCCGCCATTGTGCCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACTCTGGACAGAACCATATATTGTTTCTCCGCCATTGTGCCCAGC  200

seq1  ACGTACCGAACTAACCGTCTTCCTTCTACCACTAGCAACTATCATCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACCGAACTAACCGTCTTCCTTCTACCACTAGCAACTATCATCACTT  250

seq1  GAACCCACCGCCACAGTTTGGAATCAAAAGCGAATTCCCATTATTTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACCGCCACAGTTTGGAATCAAAAGCGAATTCCCATTATTTACAT  300

seq1  GGGTAAAATTTTTTAAAAGGCTGGATAGAACAAGCGCATCAGGCAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAATTTTTTAAAAGGCTGGATAGAACAAGCGCATCAGGCAAAAAC  350

seq1  ATTTCCACAGTAGCTTCTCTGCAAATGTAAGCTCTTAGCTAGAGGCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACAGTAGCTTCTCTGCAAATGTAAGCTCTTAGCTAGAGGCTGCT  400

seq1  TCCAGGGTGCTTACCTGGCCCACATGCCAGGAGTAGGCATTTTAGATACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTGCTTACCTGGCCCACATGCCAGGAGTAGGCATTTTAGATACG  450

seq1  ATGTTGGGACTATTTATCTGACACAGACACACACACAGCTGGCCACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGACTATTTATCTGACACAGACACACACACAGCTGGCCACTTAA  500

seq1  TGCTATCTTAGTCAATAAAGCTAAGTCCCCTCAGGGGATATTGCCTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCTTAGTCAATAAAGCTAAGTCCCCTCAGGGGATATTGCCTGTAG  550

seq1  CCACAGCCACACTTACTCTACAGTGGGGCATAGCCCTGGCCAATCCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCACACTTACTCTACAGTGGGGCATAGCCCTGGCCAATCCCATA  600

seq1  TCGAATGACCCAAAGGCTGTGCGGGGAGGGGTGCCAGCAAGAATTCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATGACCCAAAGGCTGTGCGGGGAGGGGTGCCAGCAAGAATTCCATC  650

seq1  TCTCCAGGATCTTGCAGAATGACTTGACTTGTGAAGTGCTCTGGGCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGATCTTGCAGAATGACTTGACTTGTGAAGTGCTCTGGGCCCCA  700

seq1  TAGGTAACAAGTAGAATAGTACTTGTTTGCGACAAAGACTAATAAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACAAGTAGAATAGTACTTGTTTGCGACAAAGACTAATAAAAATG  750

seq1  GTTACCATGGCCACTATTTCTTGAGCTCTTCCCAAGTGGCAACTGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATGGCCACTATTTCTTGAGCTCTTCCCAAGTGGCAACTGTATAT  800

seq1  AGCATATATTATATTGAATCAATATATATGGTGGGTACTATTATTGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATTATATTGAATCAATATATATGGTGGGTACTATTATTGTCCC  850

seq1  TGTTTAGAAGAGAAAGCAAATATGGTGCAGATAATAAAAGTCCAGACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAAGAGAAAGCAAATATGGTGCAGATAATAAAAGTCCAGACCTC  900

seq1  TAAATTAAAAGAGGTTTCATTATTACCTAATAGCAAAACTGAGTTTGAAA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAATTAAAAGAGGTTTCATTATTACCTAATAGC-AAACTGAGTTTGAAA  949

seq1  TCCAGGTCTAGTCATTGTCCAGCTTCAGGTGTTTAACCATTATACTATCC  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCAGGTCTAGTCATTGTCCAGCTTCA-GTGTTTAACCATTATACTATCC  998

seq1  TATCTGTTTCTTACATGGAATGATTCTAAGACTCCTAGAAAGAACACCGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTCTTACATGGAATGATTCTAAGACTCCTAGAAAGAACACCGT  1048

seq1  GAGGAGTTGGGGGTGGGGGACATTTCCTGAAAACGAGTCATTCAAAA---  1097
      |||||||||||||| |||||||||||||| || | ||||| ||||||   
seq2  GAGGAGTTGGGGGTTGGGGACATTTCCTG-AACCAAGTCA-TCAAAATTG  1096

seq1  TGTGGT  1103
      ||||||
seq2  TGTGGT  1102

seq1: chrX_45780765_45781544
seq2: B6Ng01-249E17.g_69_852 (reverse)

seq1  CTCAAAAT-AACCCCCCTCTCCCAGG-AACTTG-AAACCAAAGACACCAC  47
      |||||||| ||||||||||||||||| |||||| ||||||||||||||||
seq2  CTCAAAATAAACCCCCCTCTCCCAGGAAACTTGAAAACCAAAGACACCAC  50

seq1  CACCACAG-AAGGCACACCCTATAGGAGGCAGGCAAGAAACACATGGAAG  96
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGAAAGGCACACCCTATAGGAGGCAGGCAAGAAACACATGGAAG  100

seq1  GTTCTTGTCTCCAGGCTCCTCTCAAAGCCCTTTGGCTAGGCCACAGCTTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTCTCCAGGCTCCTCTCAAAGCCCTTTGGCTAGGCCACAGCTTC  150

seq1  AGTGGCCTTTTGTCCCCCTGCACACTGCCTTGCTAGAGAGAGGAGGTCAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTTTTGTCCCCCTGCACACTGCCTTGCTAGAGAGAGGAGGTCAG  200

seq1  AGGACACACGTGCCTCCAGGCAAAGTCTATTCCCAAGTCTCTCTGGGATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACACGTGCCTCCAGGCAAAGTCTATTCCCAAGTCTCTCTGGGATG  250

seq1  GGGAAGTGATGCCTGGTTGATACACCGAAAAGCAGATACACATTGCAGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGATGCCTGGTTGATACACCGAAAAGCAGATACACATTGCAGGA  300

seq1  GTGTGCACCACTAGACGGAGCAAAAAGGCCGGGCTGCCTGTCAACACACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACCACTAGACGGAGCAAAAAGGCCGGGCTGCCTGTCAACACACA  350

seq1  CCCTGGGCCTCTGAGGTTCTGAGTACACTTTCCAAGCCAAGGCAACAGCG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCCTCTGAGGTTCTGAGTACACTTTCCAAGCCAAGGCAACAGCG  400

seq1  AGGTAGTTTGGACTGATTCTGCATAACCACAACTAGGCTCCCCAGCTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTTGGACTGATTCTGCATAACCACAACTAGGCTCCCCAGCTCAG  450

seq1  GGGTACAGACCCTTCCTTCCTGGGACTGTTACTGGGACACACCAAGCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAGACCCTTCCTTCCTGGGACTGTTACTGGGACACACCAAGCAGC  500

seq1  ATCCAGCACCCACCCATACAGCCCTCCCCTACCAGAGGAGGCAGCTTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCACCCACCCATACAGCCCTCCCCTACCAGAGGAGGCAGCTTTAA  550

seq1  TGGGAGAGCCACGTCCACAATCTCTACCAAGTGGGTTTAAATCTAGGCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGCCACGTCCACAATCTCTACCAAGTGGGTTTAAATCTAGGCTT  600

seq1  GATCAGCTCAGTCAATGGCTCGCCGAATTGCTGGTAACACCCAAGGCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTCAGTCAATGGCTCGCCGAATTGCTGGTAACACCCAAGGCATT  650

seq1  CTTTGCACATGCCAAACATGGGGGCCAGATAGTCAGCTGGGCCACCCGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCACATGCCAAACATGGGGGCCAGATAGTCAGCTGGGCCACCCGGT  700

seq1  GCAATTCTCTAGTTCCCTGTCCTCTCAAGAGGCGACTGTCACTCCTGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTCTAGTTCCCTGTCCTCTCAAGAGGCGACTGTCACTCCTGAAA  750

seq1  TACCTCGTTCTCTCATGAAACCTTTCTGGAATTC  780
      ||||||||||||||||||||||||||||||||||
seq2  TACCTCGTTCTCTCATGAAACCTTTCTGGAATTC  784