BAC Information

Click to search

BAC

Clone NameB6Ng01-250C09
ChromosomeX (Build37)
Map Location 80,378,854 - 80,380,054
singlet/doubletsinglet
Overlap geneDmd
Upstream geneEG629310
Downstream geneTsga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250C09.bB6Ng01-250C09.g
ACCGA057775GA057776
length1,1921,204
definitionB6Ng01-250C09.b B6Ng01-250C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgtagtgtggctacccataaatcgtgctagggattcttcag
tagcacagcttattacaatgcagttgggacttttagtgagaaagctgcca
taaattgtttagacaacttcctgctgggacagctgcctttaaatctccaa
tgttcatgtaattaaacccagaaaacttattgattacccaactctatagg
agaaaacctcttctttgatctatcaatactgtatctttctctagtgtgaa
taagagtttctttacatattcccaagaaaagttatactcataatttgttc
tttcttttcccattcatcaattcattcattcacttttattaaaatttctt
aataactatctttagttgttaccctagtcctgtgagagcaagaacatact
cctatcagatagcattaatgcatttgggtaatttctgcattctgcctcaa
gcacctcccattaaacaccagttcccaacataaccacataaatgtagcca
cacaaaacataatgagttctgttgtgagcagaatatatttaatgcataac
agacccatcttctctctagtgtttgacagaatattcatggatttgaatgt
aaaagggaattggaattgcaaataagttcatttacttttagggatatccc
tatatacccctgagaaatatttgtctcaacctttgtgccaagccagttta
aatgttccattgaaaatattctatttcttcttttattaagttgaaaataa
tgttatggaattgatagataggaactgttaggcttgaaaagtattagtct
acttttgtttattcaaatttgtcagcaaaggaaaggcttccccattatat
atttatgatttatgtgataccatatggataatgttgaaattgaacatatg
tatagtagcctgtgggaataacataatttaaaaaagggaagttattttat
gaaggagaataaatttctcataaaggatagcagtgatctgatcttttgac
attagtaaaaactcatctttgtagattctttttgatttaaaggtagacat
cttttagtgtatgtaatgtatttgtcatgaaaagcatcctgcattatttt
attgttattaagagaaagtatgaacattacactgaaattatttagaaatg
ttttttatttgaagccatttcataacagcttttgactaagta

gaattctcacctgaggaatactgaatggctgagaagcacctgtaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcaaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaaatggacatcgtgctactggaggatcccacaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggaatgacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatctaagatacaatttgcaaaacgcatgaaactcaa
gaagaaagaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatctagagactgccatacccggggatctgtctcataat
cagcttccaaacgctgacaccattgcaaacactagcaagattttgctgaa
aggacccagatatggctgtctcttgtgagactatgcccggggcctaacaa
acacagaattggatgctcacagtcagctattagatggatcacagggcccc
aatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccc
tataggtagacacaatatgactaaccagtacccccaggagtcgtgtctct
agctgcatatatattcagaagacggcctagtgcatcagatgaaagagggc
cattgctctgcaacctttaatggctcatacagggaatcgcagtcagatgg
agtggacagtgtcggtggcactgcagtgtcaatcttcactcctgatcata
ctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_80378854_80380054
seq2: B6Ng01-250C09.b_44_1235

seq1  GAATTCTTCTGTAGTGTGGCTACCCATAAATCGTGCTAGGGATTCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTAGTGTGGCTACCCATAAATCGTGCTAGGGATTCTTCAG  50

seq1  TAGCACAGCTTATTACAATGCAGTTGGGACTTTTAGTGAGAAAGCTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGCTTATTACAATGCAGTTGGGACTTTTAGTGAGAAAGCTGCCA  100

seq1  TAAATTGTTTAGACAACTTCCTGCTGGGACAGCTGCCTTTAAATCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTTTAGACAACTTCCTGCTGGGACAGCTGCCTTTAAATCTCCAA  150

seq1  TGTTCATGTAATTAAACCCAGAAAACTTATTGATTACCCAACTCTATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTAATTAAACCCAGAAAACTTATTGATTACCCAACTCTATAGG  200

seq1  AGAAAACCTCTTCTTTGATCTATCAATACTGTATCTTTCTCTAGTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTCTTCTTTGATCTATCAATACTGTATCTTTCTCTAGTGTGAA  250

seq1  TAAGAGTTTCTTTACATATTCCCAAGAAAAGTTATACTCATAATTTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTTCTTTACATATTCCCAAGAAAAGTTATACTCATAATTTGTTC  300

seq1  TTTCTTTTCCCATTCATCAATTCATTCATTCACTTTTATTAAAATTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCCCATTCATCAATTCATTCATTCACTTTTATTAAAATTTCTT  350

seq1  AATAACTATCTTTAGTTGTTACCCTAGTCCTGTGAGAGCAAGAACATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTATCTTTAGTTGTTACCCTAGTCCTGTGAGAGCAAGAACATACT  400

seq1  CCTATCAGATAGCATTAATGCATTTGGGTAATTTCTGCATTCTGCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAGATAGCATTAATGCATTTGGGTAATTTCTGCATTCTGCCTCAA  450

seq1  GCACCTCCCATTAAACACCAGTTCCCAACATAACCACATAAATGTAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCCATTAAACACCAGTTCCCAACATAACCACATAAATGTAGCCA  500

seq1  CACAAAACATAATGAGTTCTGTTGTGAGCAGAATATATTTAATGCATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACATAATGAGTTCTGTTGTGAGCAGAATATATTTAATGCATAAC  550

seq1  AGACCCATCTTCTCTCTAGTGTTTGACAGAATATTCATGGATTTGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATCTTCTCTCTAGTGTTTGACAGAATATTCATGGATTTGAATGT  600

seq1  AAAAGGGAATTGGAATTGCAAATAAGTTCATTTACTTTTAGGGATATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAATTGGAATTGCAAATAAGTTCATTTACTTTTAGGGATATCCC  650

seq1  TATATACCCCTGAGAAATATTTGTCTCAACCTTTGTGCCAAGCCAGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCCCTGAGAAATATTTGTCTCAACCTTTGTGCCAAGCCAGTTTA  700

seq1  AATGTTCCATTGAAAATATTCTATTTCTTCTTTTATTAAGTTGAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCATTGAAAATATTCTATTTCTTCTTTTATTAAGTTGAAAATAA  750

seq1  TGTTATGGAATTGATAGATAGGAACTGTTAGGCTTGAAAAGTATTAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGAATTGATAGATAGGAACTGTTAGGCTTGAAAAGTATTAGTCT  800

seq1  ACTTTTGTTTATTCAAATTTGTCAGCAAAGGAAAGGCTTCCCCATTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTTATTCAAATTTGTCAGCAAAGGAAAGGCTTCCCCATTATAT  850

seq1  ATTTATGATTTATGTGATACCATATGGATAATGTTGAAATTGAACATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGATTTATGTGATACCATATGGATAATGTTGAAATTGAACATATG  900

seq1  TATAGTAGCCTGTGGGAATAACATAATTTAAAAAAGGGAAGTTATTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAGCCTGTGGGAATAACATAATTTAAAAAAGGGAAGTTATTTTAT  950

seq1  GAAGGAGAATAAAATTTCTCATAAAGGATAGCAGTGATCTGATCTTTTGA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  GAAGGAGAAT-AAATTTCTCATAAAGGATAGCAGTGATCTGATCTTTTG-  998

seq1  ACATTAGTAAAAAACTCATC-TTGTAGATTCTTTTTGATTTAAAGGTAGA  1049
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  ACATTAGT-AAAAACTCATCTTTGTAGATTCTTTTTGATTTAAAGGTAGA  1047

seq1  CATCTTTTAGTGTATGT-ATGTATTTGTCATGGAAAAGCAATTCTGCATT  1098
      ||||||||||||||||| ||||||||||||| ||||||| || |||||||
seq2  CATCTTTTAGTGTATGTAATGTATTTGTCAT-GAAAAGC-ATCCTGCATT  1095

seq1  ATTTTA-TGTTATTAAGAGAAAGTATGACCATTTACCACTGAAAATTATA  1147
      |||||| ||||||||||||||||||||| ||||   ||||| ||||||| 
seq2  ATTTTATTGTTATTAAGAGAAAGTATGAACATT--ACACTG-AAATTAT-  1141

seq1  TAAGAAATG-TTTTTATTTGGAGGCATTTTCATAACAGTCTTTTTGACCT  1196
      | ||||||| |||||||||| || || |||||||||||   |||||| ||
seq2  TTAGAAATGTTTTTTATTTGAAGCCA-TTTCATAACAG--CTTTTGA-CT  1187

seq1  AAGTA  1201
      |||||
seq2  AAGTA  1192


| Home | SequenceCutter | Blast | Download |