MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-253B04
Chromosome	X (Build37)
Map Location	140,912,178 - 140,912,523
singlet/doublet	singlet
Overlap gene	Trpc5
Upstream gene	Pak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407
Downstream gene	LOC100039436, Zcchc16, LOC666655, LOC623591, Lhfpl1, Amot
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pak3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18481 MGI:1339656
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Capn6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12338 MGI:1100850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dcx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13193 MGI:1277171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666628 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC666633 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666633
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100039378 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039378
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 49 ESTs

name	LOC100039243 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039243
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Alg13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67574 MGI:1914824
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039407 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Trpc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22067 MGI:109524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039436 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 38 Proteins

name	Zcchc16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619287 MGI:3588192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666655 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666655
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC623591 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 Proteins pseudo : _no_value

name	Lhfpl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237091 MGI:1891214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amot (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27494 MGI:108440
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pak3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606271 GeneID:18481 MGI:1339656
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : p21 (CDKN1A)-activated kinase 3 transcript_id : NM_008778.2

name	Capn6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328102 GeneID:12338 MGI:1100850
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calpain 6 transcript_id : NM_007603.2

name	Dcx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46575787 GeneID:13193 MGI:1277171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : doublecortin transcript_id : NM_010025.2

name	LOC100039378 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272419 GeneID:100039378
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 49 ESTs product : similar to gag protein transcript_id : XM_001472704.1

name	Alg13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385753 GeneID:67574 MGI:1914824
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 13 homolog (S. cerevisiae) transcript_id : NM_026247.1

name	Trpc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130397 GeneID:22067 MGI:109524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily C, member 5 transcript_id : NM_009428.2

name	LOC100039436 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272421 GeneID:100039436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 37 Proteins product : similar to RIKEN cDNA 2410003J06 gene, transcript variant 1 transcript_id : XM_001472784.1

name	LOC100039436 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272423 GeneID:100039436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : similar to RIKEN cDNA 2410003J06 gene, transcript variant 2 transcript_id : XM_001472802.1

name	Zcchc16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361727 GeneID:619287 MGI:3588192
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CCHC domain containing 16 transcript_id : NM_001033795.3

name	Lhfpl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328432 GeneID:237091 MGI:1891214
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipoma HMGIC fusion partner-like 1 transcript_id : NM_178358.3

name	Amot (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125346195 GeneID:27494 MGI:108440
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiomotin transcript_id : NM_153319.2

name	Pak3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606272 CCDS:CCDS30454.1 GeneID:18481 MGI:1339656
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : Cdc42/Rac effector kinase product : p21 (CDKN1A)-activated kinase 3 protein_id : NP_032804.2

name	Capn6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328103 CCDS:CCDS30455.1 GeneID:12338 MGI:1100850
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0004198 - calpain activity [Evidence IEA]; GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : calpain 6 protein_id : NP_031629.2

name	Dcx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575788 GeneID:13193 MGI:1277171
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001764 - neuron migration [Evidence IGI] codon_start : 1 note : doublecortex; lissencephaly, X-linked (doublecortin) product : doublecortin protein_id : NP_034155.2

name	LOC100039378 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272420 GeneID:100039378
definition	codon_start : 1 product : similar to gag protein protein_id : XP_001472754.1

name	Alg13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385754 CCDS:CCDS30456.1 GeneID:67574 MGI:1914824
definition	GO_function : GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glycosyltransferase 28 domain containing 1 protein_id : NP_080523.1

name	Trpc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678435 CCDS:CCDS30457.1 GeneID:22067 MGI:109524
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : transient receptor protein 5; vtransient receptor potential cation channel, subfamily C, member 5; transient receptor potential cation channel subfamily C member 5 product : transient receptor potential cation channel, subfamily C, member 5 protein_id : NP_033454.1

name	LOC100039436 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272422 GeneID:100039436
definition	codon_start : 1 product : similar to RIKEN cDNA 2410003J06 gene isoform 1 protein_id : XP_001472834.1

name	LOC100039436 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272424 GeneID:100039436
definition	codon_start : 1 product : similar to RIKEN cDNA 2410003J06 gene isoform 2 protein_id : XP_001472852.1

name	Zcchc16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486592 GeneID:619287 MGI:3588192
definition	GO_function : GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : gag-like protein; zinc finger CCHC domain containing 16 product : zinc finger, CCHC domain containing 16 protein_id : NP_001028967.2

name	Lhfpl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30387618 CCDS:CCDS30458.1 GeneID:237091 MGI:1891214
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : lipoma HMGIC fusion partner-like 1 protein_id : NP_848135.1

name	Amot (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125346196 GeneID:27494 MGI:108440
definition	GO_component : GO:0005884 - actin filament [Evidence ISS]; GO:0031410 - cytoplasmic vesicle [Evidence ISS]; GO:0030139 - endocytic vesicle [Evidence ISS]; GO:0009897 - external side of plasma membrane [Evidence ISS]; GO:0030027 - lamellipodium [Evidence ISS] [Evidence IDA]; GO:0001726 - ruffle [Evidence ISS] GO_function : GO:0043532 - angiostatin binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence ISS] GO_process : GO:0042074 - cell migration involved in gastrulation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0016525 - negative regulation of angiogenesis [Evidence ISS]; GO:0045766 - positive regulation of angiogenesis [Evidence ISS]; GO:0043536 - positive regulation of blood vessel endothelial cell migration [Evidence ISS]; GO:0040019 - positive regulation of embryonic development [Evidence IMP]; GO:0030334 - regulation of cell migration [Evidence ISS]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 product : angiomotin protein_id : NP_695231.2

name	LOC666628 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666628
definition	number : 1 pseudo : _no_value

name	LOC666633 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666633
definition	number : 1 pseudo : _no_value

name	LOC100039243 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039243
definition	number : 2 pseudo : _no_value

name	LOC100039243 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039243
definition	number : 1 pseudo : _no_value

name	LOC100039407 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039407
definition	number : 1 pseudo : _no_value

name	LOC666655 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666655
definition	number : 1 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 4 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 3 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 2 pseudo : _no_value

name	LOC623591 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623591
definition	number : 1 pseudo : _no_value

clone name	MSMg01-470K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324J22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-507A24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-280O23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-525K21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-447A14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-428N06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-360E07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-430K07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-064F10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-452A03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-273I10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-146B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366N10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-087E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227B15
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-253B04.b	B6Ng01-253B04.g
ACC	GA059904	GA059905
length	346	1,150
definition	B6Ng01-253B04.b	B6Ng01-253B04.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	cttggagcatagtctttcaccaaatgacattcttttgaagagcccattag aatccgggtaggaatgattattaggggaaactacactgaaaaagtccttt agaaaggagcttgcaaccccataggaagaacaacaatatcaaccaaccag aactcccaggaactaaaccaccaactaaagagtatacatggagggaccca tggctccagctgcatatgtagcagaggatggccttgtcaggcatcagtgg gaggggaggcccttggtcctgtgaaggctccatgccccagtgtaggggaa tgccagggcagggaggtgggagtggttgggagaatgggggaacccc	gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt gagtttgtttatatagtggattacattgatggattttcgtatattaaacc atccctgcattcctggaataaaacctacttggtcaggatggatgattgct ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc atcgatattcataagagaaattggtctgaagttctctatctttgttggat ctttctgtgatttaggtatcagagtaatagtggcttcataaaatgagttg ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg gtcctgggctttttttggctgggagactatttataactgcttctatttct ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt tggtacctggtatctgtccagaaatttgtccatttagtccaggttttcca gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat taggattttgtctctgtgccctctagtgagtctagctaaagggtttatct atcttgttgattttctcaaagaaccaactcttcgtttggttaattctttg aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta ttcctgccgtctactcctcttgggtgaattgcttccttttttctagagct tttagatgtgttgtcaagctgctagtatgtgctctctcccgttctcatgg aggcactcagagctatgagttccctctagaatgctttcatgtgtcccaag ttgggtacgttgtgctcatttcattaacctctaaagtctttaatttctcc ttatctcttaaccagtatcatgagaagagtgttgtctcagtccacgtgag cgttgctgctgaatatatctatgctatgaagactcagccctatgtgcacg
quality values	Open. Hide. 62 62 62 62 62 47 34 54 51 56 62 62 62 62 62 62 62 44 41 59 44 43 62 62 62 62 43 43 30 36 36 34 43 43 54 54 62 59 59 59 62 62 62 62 62 59 62 59 62 62 59 62 62 62 62 62 62 62 59 62 59 62 59 62 59 62 59 59 59 62 62 54 54 48 54 62 62 59 62 62 59 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 49 47 47 62 62 62 62 62 49 62 62 62 62 62 62 58 58 47 58 45 58 58 45 58 58 58 58 54 52 20 7 7 12 5	Open. Hide. 62 47 42 47 62 62 62 62 62 47 54 51 51 34 34 34 20 12 28 59 62 62 62 62 62 59 62 62 59 59 62 62 59 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 59 59 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 49 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 41 54 40 58 58 58 58 44 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 52 58 58 54 54 58 58 58 54 38 52 58 58 58 58 58 54 58 58 54 58 54 58 53 58 58 46 46 30 53 53 58 58 58 58 58 53 54 58 58 58 58 46 41 51 53 40 53 54 58 58 49 51 51 51 51 51 58 58 58 58 50 41 54 58 58 58 53 53 51 40 53 58 58 40 49 58 58 58 51 53 47 32 54 58 54 54 51 52 51 50 52 51 50 54 58 58 52 58 49 32 53 51 58 58 54 58 52 58 49 54 50 50 41 41 53 42 49 58 53 58 58 58 54 53 53 43 58 42 19 58 36 33 52 51 51 47 32 58 58 50 58 39 54 54 54 54 44 20 13 54 33 53 45 49 38 24 37 54 35 32 53 39 46 27 52 32 13 50 37 37 53 49 52 49 54 54 38 46 54 54 52 53 34 40 34 35 53 42 37 39 22 54 54 46 35 16 47 52 49 46 52 53 33 45 37 17 54 54 51 51 26 52 53 53 42 47 53 34 30 54 53 37 37 34 35 40 31 41 33 29 45 45 40 45 31 42 14 6 46 15 27 47 14 32 52 40 45 32 53 32 32 45 52 36 40 53 32 31 28 33 19 51 52 31 37 30 30 21 51 37 27 32 45 35 33 33 21 30 31 45 30 25 41 32 31 51 32 45 45 31 31 31 31 21 51 42 35 51 30 32 31 31 31 31 31 26 26 42 34 23 42 16 33 33 13 46 29 33 37 26 30 13 37 33 46 13 33 29 32 31 42 31 31 27 42 48 48 46 27 31 37 24 43 48 31 31 31 21 20 16 46 18 21 35 32 42 31 37 13 11 31 25 31 30 32 32 32 30 30 32 25 35 41 31 21 34 21 25 29 22 26 34 25 18 30 28 27 47 43 41 43 44 34 17 34 22 30 14 29 31 44 41 24 31 19 37 28 29 16 30 20 22 31 24 37 25 25 31 32 34 33 32 18 19 30 19 23 24 32 27 31 32 33 34 23 24 30 30 39 18 24 34 16 8 13 4 13 24 23 18 12 16 19 11 13 30 25 23 17 13 21 9 29 23 19 15 12 33 7 28 16 18 32 15 25 13 20 14 15 28 31 21 28 20 11 31 17 10 7 27 7 5 9 9 19 34 11 17 15 5 4 5 11 16 21 5 9 23 13 21 7 22 15 25 12 24 8 6 38 40 27 15 13 13 21 15 13 5 6 6 9 4 12 25 22 14 14 22 9 29 14 13 11 21 28 7 3 3 1 7 22 13 12 20 4 3 5 2 9 4 7 23 6 20 5 1 2 6 7 6 21 9 5 8 5 17 4 7 4 4 8 6 5 6 5 5 15 9 5 3 3 2 5 4 2 3 6 4 5 2 1 2 9 5 22 7 3 1 4 5 3 1 1 3 1 2 3 3 3 4 1 7 3 1 2 3 3 3 4 5 4 7 7 6 19 12 5 20 30 11 1 2 9 11 7 7 11 4 3 4

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_140912178_140912523
seq2: B6Ng01-253B04.b_53_398

seq1  CTTGGAGCATAGTCTTTCACCAAATGACATTCTTTTGAAGAGCCCATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCATAGTCTTTCACCAAATGACATTCTTTTGAAGAGCCCATTAG  50

seq1  AATCCGGGTAGGAATGATTATTAGGGGAAACTACACTGAAAAAGTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGGGTAGGAATGATTATTAGGGGAAACTACACTGAAAAAGTCCTTT  100

seq1  AGAAAGGAGCTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCTTGCAACCCCATAGGAAGAACAACAATATCAACCAACCAG  150

seq1  AACTCCCAGGAACTAAACCACCAACTAAAGAGTATACATGGAGGGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCAGGAACTAAACCACCAACTAAAGAGTATACATGGAGGGACCCA  200

seq1  TGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTCAGGCATCAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTCAGGCATCAGTGG  250

seq1  GAGGGGAGGCCCTTGGTCCTGTGAAGGCTCCATGCCCCAGTGTAGGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGGCCCTTGGTCCTGTGAAGGCTCCATGCCCCAGTGTAGGGGAA  300

seq1  TGCCAGGGCAGGGAGGTGGGAGTGGTTGGGAGAATGGGGGAACACC  346
      ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCCAGGGCAGGGAGGTGGGAGTGGTTGGGAGAATGGGGGAACCCC  346

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information