BAC Information

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BAC

Clone NameB6Ng01-253M02
ChromosomeX (Build37)
Map Location 81,098,026 - 81,099,146
singlet/doubletsinglet
Overlap geneDmd
Upstream geneTsga8
Downstream geneLOC100042306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253M02.bB6Ng01-253M02.g
ACCGA060400GA060401
length1,1781,127
definitionB6Ng01-253M02.b B6Ng01-253M02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtctggcagtttctcagaaaattggacatagtactacctgagg
acccagctataccactcctgggcatatacccaatagatgcttcaacatat
tacaagaaaacatgttccactatgtccatagcagctttatttatgaaagc
cagaagctggaaagaacccagatgtccctcaacagaggaaggggtacaga
aaacagggtacaattatacaatggagtactactcggctattaaaaacaat
gaattcatgaaattcttaggcaaatgggtaaaactagaaaatatcatcct
gagtgaggtaaccaaatcataacagaacacacatggtatgcactcactga
taactggataagaggatattagctcaaaagctcggaatacccaacatata
attgacagaccacctgaagctcaagaaggaagaccaaagcatggatgctt
cagtaccttttataagggggaacaaaatactcatgggatgaaatacagag
acaaagtgtggagcagagactgaaggaaaggccatccagaaactgcccca
cctggggatccatcccatatacagtcaccaaacccagaaactattgtgga
tgccaagaactgcttgctaacaggagcctgatatagctgtctcctgagaa
gctctgccagagcctaacaaatacagaggtagatgcttgcagccaaccat
tggactgagcacagggaccccaatggagtagttaaaggagtgaaggagtt
gaagtggatttgcaacccataggataaacaatagtatcaactagaacccc
agagttcccagggactaaacaacgaaccaaagagtacacatggagggact
catggctccagctcatatgcagcagaggatgaccttgttgggcatcagtg
ggaggagaggcccttggtcctgtgaagactcgattccttagtgtagggaa
tgccagggtgggggagcaatagtagtgtgtgggtaagagacaccctcatt
gagcaagggtagggtaacagggtagtattctttttgactggaaacagaaa
ggaagttacatttgagctataattaagaaattattcagagaaagtaatcc
ataaagcgaacctgactacgttcagtaactagcatgaatgcaagttctgg
aggattaaatgctaagctacacttctga

gaattcattcttcccaaggttcttattctttaagaaatgtatacaaaatt
attattaccatattcacatccctctcctctctctccttcttcctcctccc
ccaactttcttcccagtgatttttcttatctatttagtctaaaggtattt
tttatgtgtgtgttaaactgttacacaaaagagaactacatgagaatatg
agcaataatcagttatttttgtagcaaacacaaatcattaaaaatttatt
ttgaaagcatttatattttatatattttaggtcatactggagaacatatt
aaaataatagtagttttaaaagtattgtcttcttttctttcacacctttc
atttaaaaagaaaaatagagcaaaatgtcttcatttccagggagccattc
ctaagatttttttttaccctcacattgcttttataactaccctaatatat
gctatttctgttgatctctatgattcttattattgctgagtggattaact
aaatttaagaaataacatttgagaataacaggcattgctttgagatcgaa
agacatacctgattatggtttgggaatttctaaatccattcagcaggtca
agtgtggcaaagtgtccctgcaaagtcacaggctggcatcctattggggt
ctacctaagaagatgtttagaaatagaaaccagcttatgcaatgactagt
tcaaagcttggactgacatcaagtcttttactgcctgagataatcaagca
atccatgtaatcactctttgattggctgtctgtcaggttaggctaagaaa
caacccacctcagatcttttgccatcatcttctaggctattctatgtcat
gcagcccatttaatcttaagaatgaaatgcaaaattaggtataggagcat
aaatttgaggccagtggtatgattcacaattctactgcattacatccttt
ccaattacattacattctacaaatgtctactgattagtatgttgggtgtg
ccttcatcagaagaaaggaccacattcaacatgactgatcacacattacc
tccctactatggattgggaagggctctggtagcccacctgttcacaatgc
ctgacccctggtgtcattaggatagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_81098026_81099146
seq2: B6Ng01-253M02.g_67_1193

seq1  GAATTCATTCTTCCCAAGGTTCTTATTCTTTAAGAAATGTATACAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTCCCAAGGTTCTTATTCTTTAAGAAATGTATACAAAATT  50

seq1  ATTATTACCATATTCACATCCCTCTCCTCTCTCTCCTTCTTCCTCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACCATATTCACATCCCTCTCCTCTCTCTCCTTCTTCCTCCTCCC  100

seq1  CCAACTTTCTTCCCAGTGATTTTTCTTATCTATTTAGTCTAAAGGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTCTTCCCAGTGATTTTTCTTATCTATTTAGTCTAAAGGTATTT  150

seq1  TTTATGTGTGTGTTAAACTGTTACACAAAAGAGAACTACATGAGAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTGTGTTAAACTGTTACACAAAAGAGAACTACATGAGAATATG  200

seq1  AGCAATAATCAGTTATTTTTGTAGCAAACACAAATCATTAAAAATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAATCAGTTATTTTTGTAGCAAACACAAATCATTAAAAATTTATT  250

seq1  TTGAAAGCATTTATATTTTATATATTTTAGGTCATACTGGAGAACATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCATTTATATTTTATATATTTTAGGTCATACTGGAGAACATATT  300

seq1  AAAATAATAGTAGTTTTAAAAGTATTGTCTTCTTTTCTTTCACACCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAGTAGTTTTAAAAGTATTGTCTTCTTTTCTTTCACACCTTTC  350

seq1  ATTTAAAAAGAAAAATAGAGCAAAATGTCTTCATTTCCAGGGAGCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGAAAAATAGAGCAAAATGTCTTCATTTCCAGGGAGCCATTC  400

seq1  CTAAGATTTTTTTTTACCCTCACATTGCTTTTATAACTACCCTAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTTTTTTTTACCCTCACATTGCTTTTATAACTACCCTAATATAT  450

seq1  GCTATTTCTGTTGATCTCTATGATTCTTATTATTGCTGAGTGGATTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTGTTGATCTCTATGATTCTTATTATTGCTGAGTGGATTAACT  500

seq1  AAATTTAAGAAATAACATTTGAGAATAACAGGCATTGCTTTGAGATCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGAAATAACATTTGAGAATAACAGGCATTGCTTTGAGATCGAA  550

seq1  AGACATACCTGATTATGGTTTGGGAATTTCTAAATCCATTCAGCAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACCTGATTATGGTTTGGGAATTTCTAAATCCATTCAGCAGGTCA  600

seq1  AGTGTGGCAAAGTGTCCCTGCAAAGTCACAGGCTGGCATCCTATTGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCAAAGTGTCCCTGCAAAGTCACAGGCTGGCATCCTATTGGGGT  650

seq1  CTACCTAAGAAGATGTTTAGAAATAGAAACCAGCTTATGCAATGACTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAGAAGATGTTTAGAAATAGAAACCAGCTTATGCAATGACTAGT  700

seq1  TCAAAGCTTGGACTGACATCAAGTCTTTTACTGCCTGAGATAATCAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTTGGACTGACATCAAGTCTTTTACTGCCTGAGATAATCAAGCA  750

seq1  ATCCATGTAATCACTCTTTGATTGGCTGTCTGTCAGGTTAGGCTAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTAATCACTCTTTGATTGGCTGTCTGTCAGGTTAGGCTAAGAAA  800

seq1  CAACCCACCTCAGATCTTTTGCCATCATCTTCTAGGCTATTCTATGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACCTCAGATCTTTTGCCATCATCTTCTAGGCTATTCTATGTCAT  850

seq1  GCAGCCCATTTAATCTTAAGAATGAAATGCAAAATTAGGTATAGGAGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATTTAATCTTAAGAATGAAATGCAAAATTAGGTATAGGAGCAT  900

seq1  AAATTTGAGGCCAGTGGTATGATTCACAATTCTACTGCATTACATCCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAGGCCAGTGGTATGATTCACAATTCTACTGCATTACATCCTTT  950

seq1  CCAATTACATTAACATTCTACAAATGTCTACTGATTAGTATGTTGGTGTT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||   |
seq2  CCAATTACATT-ACATTCTACAAATGTCTACTGATTAGTATGTTGGGTGT  999

seq1  GCCTTTCATCAG-AGAAAGGACCACATTTAAACAATGACTGATCACACAA  1049
      ||| |||||||| ||||||||||||||| ||   ||||||||||||||| 
seq2  GCC-TTCATCAGAAGAAAGGACCACATTCAA--CATGACTGATCACACAT  1046

seq1  TTACTCCCTACTAT-GATT-GGAAGGCTTCT-GTAG-CCACCTG-TCACA  1094
      |  ||||||||||| |||| ||||||  ||| |||| ||||||| |||||
seq2  TACCTCCCTACTATGGATTGGGAAGGGCTCTGGTAGCCCACCTGTTCACA  1096

seq1  ATG-CTGACAC--TGTGTCATTA-GTTAGAG  1121
      ||| ||||| |   ||||||||| | |||||
seq2  ATGCCTGACCCCTGGTGTCATTAGGATAGAG  1127


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